Wall clock time and date at job start Tue Mar 31 2020 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35522 * 117.00062 * 2 1 4 4 C 1.38812 * 120.89649 * 0.27545 * 3 2 1 5 5 C 1.38712 * 119.20159 * 180.27764 * 4 3 2 6 6 O 1.35526 * 119.47538 * 179.70857 * 5 4 3 7 7 N 1.32601 * 121.05115 * 359.43556 * 5 4 3 8 8 C 1.31601 * 121.97740 * 0.27357 * 7 5 4 9 9 C 1.39549 * 120.67150 * 0.02562 * 8 7 5 10 10 C 1.47342 * 120.55724 * 179.97438 * 9 8 7 11 11 O 1.21615 * 119.99912 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99858 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.53038 * 109.45806 * 275.06438 * 13 12 10 15 15 C 1.53200 * 109.31181 * 178.61705 * 14 13 12 16 16 N 1.46932 * 108.77343 * 54.63683 * 15 14 13 17 17 C 1.36924 * 120.62896 * 126.41564 * 16 15 14 18 18 H 1.08001 * 120.00534 * 331.81895 * 17 16 15 19 19 C 1.38818 * 119.99947 * 151.82118 * 17 16 15 20 20 N 1.31607 * 120.00059 * 343.08084 * 19 17 16 21 21 Si 1.86811 * 119.99898 * 163.07813 * 19 17 16 22 22 H 1.48503 * 109.46839 * 59.99921 * 21 19 17 23 23 H 1.48503 * 109.46653 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46881 * 300.00236 * 21 19 17 25 25 C 1.46925 * 118.73602 * 306.39212 * 16 15 14 26 26 C 1.53038 * 109.45629 * 154.99807 * 13 12 10 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47049 * 300.00535 * 1 2 3 29 29 H 1.08999 * 109.46695 * 59.99944 * 1 2 3 30 30 H 1.08000 * 120.40527 * 0.02562 * 4 3 2 31 31 H 0.96703 * 113.99753 * 269.72746 * 6 5 4 32 32 H 1.08002 * 119.66936 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99860 * 359.97438 * 12 10 9 34 34 H 1.08996 * 109.46176 * 35.03050 * 13 12 10 35 35 H 1.09000 * 109.49975 * 298.56583 * 14 13 12 36 36 H 1.09001 * 109.49521 * 58.66855 * 14 13 12 37 37 H 1.09003 * 109.58538 * 294.84924 * 15 14 13 38 38 H 1.08991 * 109.70151 * 174.49179 * 15 14 13 39 39 H 0.96998 * 120.00666 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.58553 * 293.81809 * 25 16 15 41 41 H 1.09000 * 109.70317 * 173.47064 * 25 16 15 42 42 H 1.09001 * 109.50536 * 301.33376 * 26 13 12 43 43 H 1.09006 * 109.49777 * 61.43523 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3066 2.3834 0.0057 5 6 1.9726 3.6001 -0.0003 6 8 1.2578 4.7516 -0.0008 7 7 3.2975 3.6547 -0.0003 8 6 4.0397 2.5680 0.0001 9 6 3.4501 1.3032 0.0000 10 6 4.2836 0.0881 -0.0001 11 8 3.7590 -1.0091 0.0003 12 7 5.6273 0.1927 0.0005 13 6 6.4559 -1.0154 0.0010 14 6 6.6386 -1.5077 1.4384 15 6 7.4766 -2.7902 1.4321 16 7 8.7345 -2.5297 0.7190 17 6 9.9399 -2.8043 1.3076 18 1 10.0356 -2.7722 2.3829 19 6 11.0391 -3.1240 0.5223 20 7 10.8688 -3.4891 -0.7306 21 14 12.7599 -3.0358 1.2439 22 1 12.8609 -3.9651 2.3978 23 1 13.7513 -3.4223 0.2080 24 1 13.0353 -1.6494 1.6992 25 6 8.6744 -1.9694 -0.6379 26 6 7.8230 -0.6961 -0.6084 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2271 2.3514 0.0107 31 1 1.0505 5.0854 -0.8844 32 1 5.1162 2.6558 0.0006 33 1 6.0456 1.0679 0.0006 34 1 5.9676 -1.7909 -0.5891 35 1 7.1493 -0.7425 2.0230 36 1 5.6632 -1.7127 1.8795 37 1 6.9268 -3.5834 0.9254 38 1 7.6932 -3.0927 2.4565 39 1 11.6367 -3.7128 -1.2793 40 1 8.2223 -2.6957 -1.3134 41 1 9.6805 -1.7283 -0.9809 42 1 7.6906 -0.3234 -1.6241 43 1 8.3225 0.0615 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003643753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:29 Heat of formation + Delta-G solvation = -48.678560 kcal Electronic energy + Delta-G solvation = -26994.158218 eV Core-core repulsion = 23041.131242 eV Total energy + Delta-G solvation = -3953.026976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34803 -39.44557 -39.04775 -37.39837 -36.98282 -34.41186 -32.36411 -31.91813 -31.04226 -30.02486 -29.24201 -27.89104 -25.31828 -24.31547 -23.35115 -22.28241 -21.93583 -20.48611 -19.70629 -19.39361 -17.99019 -17.78637 -17.18171 -16.58768 -16.33462 -15.71127 -15.46779 -15.21250 -14.83383 -14.77104 -14.60553 -13.99222 -13.59314 -13.53468 -13.39830 -13.09462 -12.89742 -12.54099 -12.36470 -12.33574 -11.96994 -11.87666 -11.44553 -11.10603 -10.84630 -10.70179 -10.49267 -10.30619 -10.21893 -10.02161 -9.80366 -9.63301 -9.57295 -9.42687 -9.22374 -8.67738 -8.43871 -6.66951 -5.78268 -3.20394 0.22593 0.84011 2.66119 2.71168 3.15043 3.25776 3.39809 3.45203 3.46481 3.56445 4.09359 4.32365 4.46448 4.50831 4.67300 4.74270 4.88829 4.98765 5.05442 5.18567 5.31015 5.36757 5.48047 5.54222 5.61487 5.83960 5.90399 6.09894 6.28470 6.34754 6.54652 6.58928 6.61026 6.74522 6.82169 6.92858 6.99119 7.01893 7.33103 7.44270 7.60259 7.71534 7.81009 8.38726 8.46089 9.22209 9.85400 10.42618 11.30704 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002611 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.017020 B =10721.581122 C =11366.529279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.268 6.268 3 C 0.237 3.763 4 C -0.290 4.290 5 C 0.366 3.634 6 O -0.480 6.480 7 N -0.529 5.529 8 C 0.196 3.804 9 C -0.229 4.229 10 C 0.562 3.438 11 O -0.519 6.519 12 N -0.721 5.721 13 C 0.153 3.847 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.147 4.147 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.151 0.849 31 H 0.406 0.594 32 H 0.173 0.827 33 H 0.393 0.607 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 14.200 -1.682 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.176 6.176 3 C 0.180 3.820 4 C -0.312 4.312 5 C 0.189 3.811 6 O -0.288 6.288 7 N -0.251 5.251 8 C 0.037 3.963 9 C -0.236 4.236 10 C 0.347 3.653 11 O -0.395 6.395 12 N -0.372 5.372 13 C 0.050 3.950 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.048 3.952 26 C -0.187 4.187 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.169 0.831 31 H 0.265 0.735 32 H 0.189 0.811 33 H 0.227 0.773 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.563 13.854 -1.205 24.824 hybrid contribution 0.310 0.051 -0.142 0.344 sum -20.253 13.904 -1.347 24.604 Atomic orbital electron populations 1.23289 0.77929 1.05018 1.01529 1.86421 1.21413 1.24453 1.85271 1.19160 0.90908 0.84907 0.87000 1.22088 1.02235 0.91636 1.15235 1.18987 0.86594 0.84974 0.90573 1.84708 1.71228 1.38690 1.34198 1.67204 1.06460 1.33251 1.18222 1.22690 0.99870 0.84896 0.88799 1.20667 0.91551 0.96308 1.15027 1.17623 0.82295 0.87938 0.77419 1.90840 1.72705 1.27162 1.48789 1.46257 1.05404 1.10564 1.74943 1.21063 0.90614 0.85761 0.97568 1.22383 0.99671 1.00262 0.95659 1.20873 0.87588 0.92830 0.96627 1.44082 1.00746 1.72192 1.14516 1.19150 0.86360 1.41180 0.91536 0.91697 1.25050 0.98809 0.99156 0.96609 1.70007 1.29403 1.47807 1.07593 0.86367 0.84305 0.78000 0.78080 1.20891 1.21654 1.21040 1.20735 0.99054 0.89096 0.86300 1.22550 0.94664 1.02407 0.99091 0.87305 0.92148 0.92222 0.83132 0.73508 0.81056 0.77289 0.89861 0.92273 0.92673 0.96179 0.92568 0.93548 0.96111 0.89029 0.92655 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 101.05 0.99 1.11 16 2 O -0.27 -3.29 8.71 -39.56 -0.34 -3.64 16 3 C 0.24 2.77 6.74 -38.36 -0.26 2.51 16 4 C -0.29 -2.63 9.02 -39.19 -0.35 -2.98 16 5 C 0.37 3.57 7.73 -17.04 -0.13 3.44 16 6 O -0.48 -3.68 13.54 -18.27 -0.25 -3.92 16 7 N -0.53 -5.87 10.36 -13.04 -0.14 -6.00 16 8 C 0.20 2.05 10.71 -17.16 -0.18 1.86 16 9 C -0.23 -2.86 5.90 -104.69 -0.62 -3.47 16 10 C 0.56 8.58 7.73 -12.56 -0.10 8.48 16 11 O -0.52 -9.88 14.94 -16.03 -0.24 -10.12 16 12 N -0.72 -10.11 5.03 -54.87 -0.28 -10.39 16 13 C 0.15 2.65 2.41 -67.89 -0.16 2.48 16 14 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 15 C 0.15 3.19 6.52 -3.70 -0.02 3.17 16 16 N -0.59 -14.78 2.99 -172.31 -0.52 -15.29 16 17 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -26.02 11.19 55.49 0.62 -25.40 16 21 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 26 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 27 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.33 7.69 -51.93 -0.40 -0.07 16 29 H 0.06 0.30 7.72 -51.93 -0.40 -0.10 16 30 H 0.15 0.95 6.45 -52.49 -0.34 0.61 16 31 H 0.41 0.95 9.06 45.56 0.41 1.36 16 32 H 0.17 1.32 6.41 -52.49 -0.34 0.99 16 33 H 0.39 4.28 6.65 -40.82 -0.27 4.01 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -35.22 354.03 -7.18 -42.39 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.96 Total: 2.46 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.38 Total: 8.08 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.31 Total: -57.08 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.83 Total: -17.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.22 -7.18 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003643753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.284 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds