Wall clock time and date at job start Tue Mar 31 2020 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35522 * 117.00062 * 2 1 4 4 C 1.38812 * 120.89649 * 0.27545 * 3 2 1 5 5 C 1.38712 * 119.20159 * 180.27764 * 4 3 2 6 6 O 1.35526 * 119.47538 * 179.70857 * 5 4 3 7 7 N 1.32601 * 121.05115 * 359.43556 * 5 4 3 8 8 C 1.31601 * 121.97740 * 0.27357 * 7 5 4 9 9 C 1.39549 * 120.67150 * 0.02562 * 8 7 5 10 10 C 1.47342 * 120.55724 * 179.97438 * 9 8 7 11 11 O 1.21615 * 119.99912 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99858 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.53038 * 109.45806 * 275.06438 * 13 12 10 15 15 C 1.53200 * 109.31181 * 178.61705 * 14 13 12 16 16 N 1.46932 * 108.77343 * 54.63683 * 15 14 13 17 17 C 1.36924 * 120.62896 * 126.41564 * 16 15 14 18 18 H 1.08001 * 120.00534 * 331.81895 * 17 16 15 19 19 C 1.38818 * 119.99947 * 151.82118 * 17 16 15 20 20 N 1.31607 * 120.00059 * 343.08084 * 19 17 16 21 21 Si 1.86811 * 119.99898 * 163.07813 * 19 17 16 22 22 H 1.48503 * 109.46839 * 59.99921 * 21 19 17 23 23 H 1.48503 * 109.46653 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46881 * 300.00236 * 21 19 17 25 25 C 1.46925 * 118.73602 * 306.39212 * 16 15 14 26 26 C 1.53038 * 109.45629 * 154.99807 * 13 12 10 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47049 * 300.00535 * 1 2 3 29 29 H 1.08999 * 109.46695 * 59.99944 * 1 2 3 30 30 H 1.08000 * 120.40527 * 0.02562 * 4 3 2 31 31 H 0.96703 * 113.99753 * 269.72746 * 6 5 4 32 32 H 1.08002 * 119.66936 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99860 * 359.97438 * 12 10 9 34 34 H 1.08996 * 109.46176 * 35.03050 * 13 12 10 35 35 H 1.09000 * 109.49975 * 298.56583 * 14 13 12 36 36 H 1.09001 * 109.49521 * 58.66855 * 14 13 12 37 37 H 1.09003 * 109.58538 * 294.84924 * 15 14 13 38 38 H 1.08991 * 109.70151 * 174.49179 * 15 14 13 39 39 H 0.96998 * 120.00666 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.58553 * 293.81809 * 25 16 15 41 41 H 1.09000 * 109.70317 * 173.47064 * 25 16 15 42 42 H 1.09001 * 109.50536 * 301.33376 * 26 13 12 43 43 H 1.09006 * 109.49777 * 61.43523 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3066 2.3834 0.0057 5 6 1.9726 3.6001 -0.0003 6 8 1.2578 4.7516 -0.0008 7 7 3.2975 3.6547 -0.0003 8 6 4.0397 2.5680 0.0001 9 6 3.4501 1.3032 0.0000 10 6 4.2836 0.0881 -0.0001 11 8 3.7590 -1.0091 0.0003 12 7 5.6273 0.1927 0.0005 13 6 6.4559 -1.0154 0.0010 14 6 6.6386 -1.5077 1.4384 15 6 7.4766 -2.7902 1.4321 16 7 8.7345 -2.5297 0.7190 17 6 9.9399 -2.8043 1.3076 18 1 10.0356 -2.7722 2.3829 19 6 11.0391 -3.1240 0.5223 20 7 10.8688 -3.4891 -0.7306 21 14 12.7599 -3.0358 1.2439 22 1 12.8609 -3.9651 2.3978 23 1 13.7513 -3.4223 0.2080 24 1 13.0353 -1.6494 1.6992 25 6 8.6744 -1.9694 -0.6379 26 6 7.8230 -0.6961 -0.6084 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2271 2.3514 0.0107 31 1 1.0505 5.0854 -0.8844 32 1 5.1162 2.6558 0.0006 33 1 6.0456 1.0679 0.0006 34 1 5.9676 -1.7909 -0.5891 35 1 7.1493 -0.7425 2.0230 36 1 5.6632 -1.7127 1.8795 37 1 6.9268 -3.5834 0.9254 38 1 7.6932 -3.0927 2.4565 39 1 11.6367 -3.7128 -1.2793 40 1 8.2223 -2.6957 -1.3134 41 1 9.6805 -1.7283 -0.9809 42 1 7.6906 -0.3234 -1.6241 43 1 8.3225 0.0615 -0.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003643753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:28 Heat of formation + Delta-G solvation = -76.828634 kcal Electronic energy + Delta-G solvation = -26995.378897 eV Core-core repulsion = 23041.131242 eV Total energy + Delta-G solvation = -3954.247655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16376 -40.63800 -39.79140 -38.86462 -37.81076 -35.98662 -34.01776 -32.78467 -32.21006 -31.60191 -30.77856 -28.52538 -26.99875 -25.42211 -24.18893 -23.92138 -23.45820 -21.69073 -21.05440 -20.33896 -19.18761 -18.68175 -18.40299 -17.85788 -17.08771 -16.98501 -16.63855 -16.29445 -16.01528 -15.86636 -15.61325 -15.41833 -15.32490 -14.89974 -14.64046 -14.41652 -14.12777 -13.97561 -13.66490 -13.19490 -12.99324 -12.97724 -12.57384 -12.55903 -12.53188 -12.49026 -12.21933 -12.02307 -11.85669 -11.55295 -11.38476 -11.15169 -10.56125 -10.53456 -10.28054 -10.16239 -9.87517 -8.69293 -7.86348 -5.32048 -0.56241 0.07980 1.50155 1.51915 1.59105 1.74607 2.02540 2.09919 2.45669 2.53489 2.67761 3.29357 3.40539 3.55511 3.63951 3.69016 3.90929 4.04917 4.10993 4.17528 4.31177 4.32289 4.35514 4.40906 4.48167 4.63164 4.66725 4.70831 4.82740 4.88114 5.04795 5.07670 5.17217 5.17622 5.31534 5.49113 5.54359 5.66132 5.73446 6.07915 6.40346 6.50231 6.58883 6.74847 7.16081 7.25699 7.85550 8.38639 9.20655 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002611 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.017020 B =10721.581122 C =11366.529279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.301 6.301 3 C 0.227 3.773 4 C -0.280 4.280 5 C 0.371 3.629 6 O -0.484 6.484 7 N -0.548 5.548 8 C 0.208 3.792 9 C -0.253 4.253 10 C 0.564 3.436 11 O -0.564 6.564 12 N -0.707 5.707 13 C 0.165 3.835 14 C -0.124 4.124 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.179 3.821 26 C -0.129 4.129 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.179 0.821 31 H 0.429 0.571 32 H 0.196 0.804 33 H 0.411 0.589 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.006 0.994 38 H 0.057 0.943 39 H 0.251 0.749 40 H -0.006 1.006 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.830 16.828 -1.117 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.210 6.210 3 C 0.171 3.829 4 C -0.302 4.302 5 C 0.195 3.805 6 O -0.296 6.296 7 N -0.270 5.270 8 C 0.049 3.951 9 C -0.260 4.260 10 C 0.352 3.648 11 O -0.443 6.443 12 N -0.359 5.359 13 C 0.060 3.940 14 C -0.164 4.164 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.053 3.947 26 C -0.169 4.169 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.293 0.707 32 H 0.212 0.788 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.012 0.988 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.699 16.547 -0.644 27.296 hybrid contribution 0.497 -0.752 -0.328 0.959 sum -21.202 15.795 -0.972 26.456 Atomic orbital electron populations 1.23594 0.75579 1.06166 1.03302 1.86380 1.24065 1.25301 1.85267 1.19390 0.90967 0.85602 0.86989 1.22247 1.03447 0.90341 1.14191 1.19182 0.86455 0.85771 0.89143 1.84661 1.70740 1.37852 1.36313 1.67295 1.07289 1.33278 1.19185 1.22973 1.00886 0.83929 0.87308 1.20508 0.91845 0.95607 1.18033 1.18011 0.82375 0.88337 0.76106 1.90816 1.73478 1.29095 1.50933 1.45924 1.05030 1.10308 1.74658 1.20654 0.90432 0.86557 0.96333 1.22178 0.99026 0.98664 0.96575 1.20953 0.86797 0.94282 0.96060 1.44342 1.01173 1.72695 1.15029 1.19485 0.87488 1.40670 0.91869 0.91534 1.25813 1.02342 0.99240 0.97023 1.70169 1.30044 1.49077 1.08846 0.85324 0.79602 0.78235 0.77155 1.20381 1.22057 1.20086 1.20564 0.98292 0.90737 0.85153 1.22274 0.93943 0.99679 1.00971 0.86677 0.90552 0.90136 0.80358 0.70730 0.78771 0.75100 0.92320 0.91322 0.92383 0.97568 0.92462 0.93992 0.98815 0.91781 0.90246 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.20 16 2 O -0.30 -7.22 8.71 -67.89 -0.59 -7.81 16 3 C 0.23 5.00 6.74 23.06 0.16 5.15 16 4 C -0.28 -4.36 9.02 22.52 0.20 -4.16 16 5 C 0.37 6.20 7.73 84.69 0.65 6.85 16 6 O -0.48 -5.83 13.54 -88.29 -1.20 -7.03 16 7 N -0.55 -10.75 10.36 -307.94 -3.19 -13.94 16 8 C 0.21 3.88 10.71 85.04 0.91 4.79 16 9 C -0.25 -5.99 5.90 -19.91 -0.12 -6.11 16 10 C 0.56 16.89 7.73 86.64 0.67 17.56 16 11 O -0.56 -21.80 14.94 16.29 0.24 -21.55 16 12 N -0.71 -18.84 5.03 -445.76 -2.24 -21.08 16 13 C 0.16 5.62 2.41 45.02 0.11 5.73 16 14 C -0.12 -4.50 5.65 30.67 0.17 -4.33 16 15 C 0.15 6.37 6.52 86.36 0.56 6.93 16 16 N -0.61 -30.88 2.99 -699.07 -2.09 -32.97 16 17 C -0.27 -14.60 9.58 84.04 0.81 -13.79 16 18 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.71 4.92 84.87 0.42 -2.29 16 20 N -0.94 -55.21 11.19 21.65 0.24 -54.96 16 21 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.18 8.52 5.30 86.36 0.46 8.98 16 26 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 0.66 7.69 -2.39 -0.02 0.64 16 29 H 0.08 0.61 7.72 -2.39 -0.02 0.59 16 30 H 0.18 1.62 6.45 -2.91 -0.02 1.60 16 31 H 0.43 0.54 9.06 -74.06 -0.67 -0.13 16 32 H 0.20 2.43 6.41 -2.91 -0.02 2.41 16 33 H 0.41 7.91 6.65 -92.71 -0.62 7.29 16 34 H 0.06 2.33 7.58 -2.39 -0.02 2.32 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 41 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -77.99 354.03 -0.73 -78.73 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.22 Total: 11.91 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.29 Total: 22.15 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -7.28 Total: -122.96 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.54 Total: -36.39 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -77.99 -0.73 -78.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003643753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.899 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds