Wall clock time and date at job start Tue Mar 31 2020 13:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00347 * 2 1 4 4 O 1.21606 * 120.00500 * 183.22200 * 3 2 1 5 5 C 1.47294 * 119.99490 * 3.21759 * 3 2 1 6 6 C 1.36571 * 125.80167 * 173.38623 * 5 3 2 7 7 C 1.40057 * 106.92412 * 180.02562 * 6 5 3 8 8 C 1.36567 * 106.92792 * 0.02562 * 7 6 5 9 9 C 1.47294 * 125.80974 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00608 * 179.97438 * 9 8 7 11 11 O 1.21614 * 119.99841 * 0.02562 * 9 8 7 12 12 O 1.34550 * 108.39022 * 0.23820 * 8 7 6 13 13 C 1.46500 * 120.00041 * 179.97438 * 2 1 3 14 14 C 1.53047 * 109.46057 * 60.02881 * 13 2 1 15 15 C 1.53188 * 109.31328 * 178.60243 * 14 13 2 16 16 N 1.46925 * 108.76748 * 54.65341 * 15 14 13 17 17 C 1.36938 * 120.63106 * 126.40493 * 16 15 14 18 18 H 1.08003 * 119.99691 * 323.98198 * 17 16 15 19 19 C 1.38812 * 120.00302 * 143.98108 * 17 16 15 20 20 N 1.31617 * 119.99627 * 2.15314 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 182.14961 * 19 17 16 22 22 H 1.48499 * 109.46876 * 90.00416 * 21 19 17 23 23 H 1.48495 * 109.46972 * 209.99893 * 21 19 17 24 24 H 1.48492 * 109.47327 * 330.00297 * 21 19 17 25 25 C 1.46925 * 118.73827 * 306.38450 * 16 15 14 26 26 C 1.53041 * 109.46187 * 299.97375 * 13 2 1 27 27 H 1.09002 * 109.47132 * 83.92051 * 1 2 3 28 28 H 1.09003 * 109.46842 * 203.92255 * 1 2 3 29 29 H 1.08998 * 109.46763 * 323.92151 * 1 2 3 30 30 H 1.08002 * 126.53614 * 359.97438 * 6 5 3 31 31 H 1.08005 * 126.54107 * 180.02562 * 7 6 5 32 32 H 0.97009 * 119.99764 * 0.02562 * 10 9 8 33 33 H 0.96993 * 120.00306 * 179.72189 * 10 9 8 34 34 H 1.08999 * 109.46067 * 180.02562 * 13 2 1 35 35 H 1.08997 * 109.49375 * 298.56588 * 14 13 2 36 36 H 1.08995 * 109.49468 * 58.66061 * 14 13 2 37 37 H 1.09002 * 109.59899 * 294.86329 * 15 14 13 38 38 H 1.08999 * 109.70020 * 174.50616 * 15 14 13 39 39 H 0.96999 * 119.99834 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.58599 * 293.81921 * 25 16 15 41 41 H 1.08997 * 109.70071 * 173.46543 * 25 16 15 42 42 H 1.08994 * 109.50013 * 301.33653 * 26 13 2 43 43 H 1.09001 * 109.49691 * 61.43425 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3536 1.1680 -0.0592 5 6 1.4042 2.4417 0.0716 6 6 1.9640 3.6801 0.2069 7 6 0.9108 4.6030 0.2325 8 6 -0.2469 3.8887 0.1122 9 6 -1.6082 4.4508 0.0917 10 7 -2.6729 3.6339 -0.0332 11 8 -1.7715 5.6522 0.1864 12 8 0.0671 2.5835 0.0216 13 6 2.1975 -1.2687 0.0006 14 6 1.8282 -2.0713 -1.2491 15 6 2.6220 -3.3814 -1.2629 16 7 2.3849 -4.0910 0.0016 17 6 1.9519 -5.3901 0.0020 18 1 1.2596 -5.7288 -0.7545 19 6 2.4028 -6.2717 0.9748 20 7 3.2132 -5.8486 1.9216 21 14 1.8592 -8.0586 0.9402 22 1 2.8181 -8.8520 0.1300 23 1 1.8223 -8.5917 2.3257 24 1 0.5055 -8.1526 0.3373 25 6 2.6218 -3.3804 1.2656 26 6 1.8281 -2.0702 1.2509 27 1 -0.3633 0.1088 -1.0219 28 1 -0.3633 -0.9394 0.4167 29 1 -0.3633 0.8306 0.6052 30 1 3.0178 3.9047 0.2811 31 1 0.9976 5.6752 0.3289 32 1 -2.5427 2.6756 -0.1092 33 1 -3.5695 4.0038 -0.0427 34 1 3.2691 -1.0693 0.0009 35 1 0.7609 -2.2925 -1.2371 36 1 2.0698 -1.4903 -2.1391 37 1 3.6851 -3.1637 -1.3660 38 1 2.2935 -4.0013 -2.0970 39 1 3.5280 -6.4645 2.6016 40 1 3.6847 -3.1627 1.3687 41 1 2.2925 -3.9977 2.1014 42 1 2.0697 -1.4886 2.1404 43 1 0.7609 -2.2915 1.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005689726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:20 Heat of formation + Delta-G solvation = -26.555741 kcal Electronic energy + Delta-G solvation = -27273.860529 eV Core-core repulsion = 23321.792871 eV Total energy + Delta-G solvation = -3952.067658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.18146 -39.99941 -39.51720 -37.51657 -35.34861 -34.35470 -33.39648 -32.59570 -30.79326 -30.06951 -29.51002 -27.08170 -25.74831 -24.45327 -22.73538 -22.22009 -21.77655 -21.01554 -20.13215 -19.06745 -18.63677 -17.58502 -17.25554 -17.02438 -16.77015 -16.28550 -15.33283 -15.06671 -14.86366 -14.63804 -14.26616 -13.78612 -13.67324 -13.62408 -13.52601 -13.41405 -13.12314 -13.05189 -12.59440 -12.42796 -12.04415 -11.56818 -11.08369 -10.98198 -10.92891 -10.83030 -10.46515 -10.41583 -10.29589 -10.29406 -10.20171 -10.06801 -9.86637 -9.65209 -9.15324 -8.60193 -8.43360 -6.61266 -5.84636 -3.38291 0.32046 1.60768 2.01234 2.70518 2.82117 2.98503 3.10692 3.33551 3.40234 3.40871 4.14297 4.42994 4.47502 4.54883 5.01344 5.14817 5.20502 5.24012 5.33931 5.36408 5.43918 5.48902 5.56810 5.70488 5.80540 5.86142 6.01912 6.06377 6.13824 6.25407 6.30228 6.42576 6.47468 6.57787 6.72405 6.75289 6.81091 6.90696 7.27614 7.36093 7.60561 7.70979 7.73841 7.94123 8.46775 9.18673 9.76944 10.37373 11.22567 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002679 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.919656 B =10449.154941 C =10997.477439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.593 5.593 3 C 0.591 3.409 4 O -0.514 6.514 5 C -0.024 4.024 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.069 4.069 9 C 0.611 3.389 10 N -0.841 5.841 11 O -0.520 6.520 12 O -0.147 6.147 13 C 0.144 3.856 14 C -0.137 4.137 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.257 4.257 18 H 0.064 0.936 19 C 0.010 3.990 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.147 4.147 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.256 0.744 40 H 0.019 0.981 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 17.489 -3.401 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.323 5.323 3 C 0.377 3.623 4 O -0.392 6.392 5 C -0.078 4.078 6 C -0.162 4.162 7 C -0.144 4.144 8 C -0.122 4.122 9 C 0.396 3.604 10 N -0.405 5.405 11 O -0.397 6.397 12 O -0.043 6.043 13 C 0.043 3.957 14 C -0.178 4.178 15 C 0.020 3.980 16 N -0.316 5.316 17 C -0.386 4.386 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.046 3.954 26 C -0.188 4.188 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.187 0.813 31 H 0.185 0.815 32 H 0.238 0.762 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.196 17.872 -3.252 20.360 hybrid contribution -0.573 -1.087 0.009 1.229 sum -9.769 16.785 -3.243 19.689 Atomic orbital electron populations 1.22006 0.79477 1.03698 1.02078 1.48147 1.07485 1.06113 1.70575 1.16850 0.86261 0.81176 0.78022 1.90877 1.11851 1.85570 1.50872 1.22700 0.79960 0.96917 1.08191 1.21993 1.01581 0.90116 1.02490 1.21978 0.89958 1.01616 1.00829 1.22329 0.95831 0.81963 1.12102 1.16620 0.82006 0.85735 0.76082 1.43694 1.09074 1.11553 1.76134 1.90924 1.84708 1.13745 1.50299 1.84314 1.23968 1.25810 1.70208 1.21379 0.97228 0.80171 0.96954 1.22380 1.01500 0.98133 0.95751 1.20893 0.95795 0.90750 0.90514 1.44017 1.77831 1.10473 0.99316 1.19130 1.20632 0.85312 1.13572 0.91879 1.25348 0.96953 0.97972 0.98626 1.69891 1.35472 1.34064 1.15285 0.86275 0.78256 0.85163 0.76945 1.21229 1.21636 1.20434 1.20892 0.95146 0.88330 0.91048 1.22645 1.01798 0.99297 0.95014 0.92315 0.89591 0.90669 0.81297 0.81485 0.76201 0.75707 0.88357 0.92020 0.92864 0.96111 0.92344 0.93406 0.96250 0.88208 0.93008 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.68 59.85 0.52 1.26 16 2 N -0.59 -8.39 2.76 -175.20 -0.48 -8.87 16 3 C 0.59 8.79 7.66 -12.58 -0.10 8.69 16 4 O -0.51 -9.23 16.20 5.27 0.09 -9.15 16 5 C -0.02 -0.29 6.78 -36.50 -0.25 -0.53 16 6 C -0.14 -1.53 10.60 -39.50 -0.42 -1.94 16 7 C -0.12 -1.21 10.60 -39.50 -0.42 -1.63 16 8 C -0.07 -0.68 7.14 -36.50 -0.26 -0.94 16 9 C 0.61 5.71 8.08 -12.58 -0.10 5.60 16 10 N -0.84 -4.55 8.87 30.40 0.27 -4.28 16 11 O -0.52 -6.49 17.70 5.27 0.09 -6.39 16 12 O -0.15 -1.47 7.02 4.35 0.03 -1.44 16 13 C 0.14 2.42 2.47 -67.88 -0.17 2.26 16 14 C -0.14 -2.29 5.34 -26.61 -0.14 -2.43 16 15 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 16 N -0.59 -14.29 2.99 -172.33 -0.52 -14.81 16 17 C -0.26 -6.77 9.55 -15.06 -0.14 -6.92 16 18 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 19 C 0.01 0.27 5.28 -17.43 -0.09 0.18 16 20 N -0.90 -25.40 10.75 55.49 0.60 -24.80 16 21 Si 0.90 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.17 3.97 5.24 -3.71 -0.02 3.95 16 26 C -0.15 -2.69 5.32 -26.61 -0.14 -2.83 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.93 6.47 -51.93 -0.34 0.60 16 29 H 0.08 0.69 5.40 -51.93 -0.28 0.41 16 30 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.41 1.49 8.59 -40.82 -0.35 1.14 16 33 H 0.41 1.51 8.93 -40.82 -0.36 1.15 16 34 H 0.10 1.87 6.90 -51.93 -0.36 1.52 16 35 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 2.58 6.05 -51.93 -0.31 2.27 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.03 6.73 -51.93 -0.35 0.69 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -32.15 354.10 -7.04 -39.19 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.67 Total: 1.57 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.76 Total: 7.67 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.13 Total: -52.76 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.21 Total: -16.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.15 -7.04 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005689726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.630 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds