Wall clock time and date at job start Tue Mar 31 2020 13:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00347 * 2 1 4 4 O 1.21606 * 120.00500 * 183.22200 * 3 2 1 5 5 C 1.47294 * 119.99490 * 3.21759 * 3 2 1 6 6 C 1.36571 * 125.80167 * 173.38623 * 5 3 2 7 7 C 1.40057 * 106.92412 * 180.02562 * 6 5 3 8 8 C 1.36567 * 106.92792 * 0.02562 * 7 6 5 9 9 C 1.47294 * 125.80974 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00608 * 179.97438 * 9 8 7 11 11 O 1.21614 * 119.99841 * 0.02562 * 9 8 7 12 12 O 1.34550 * 108.39022 * 0.23820 * 8 7 6 13 13 C 1.46500 * 120.00041 * 179.97438 * 2 1 3 14 14 C 1.53047 * 109.46057 * 60.02881 * 13 2 1 15 15 C 1.53188 * 109.31328 * 178.60243 * 14 13 2 16 16 N 1.46925 * 108.76748 * 54.65341 * 15 14 13 17 17 C 1.36938 * 120.63106 * 126.40493 * 16 15 14 18 18 H 1.08003 * 119.99691 * 323.98198 * 17 16 15 19 19 C 1.38812 * 120.00302 * 143.98108 * 17 16 15 20 20 N 1.31617 * 119.99627 * 2.15314 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 182.14961 * 19 17 16 22 22 H 1.48499 * 109.46876 * 90.00416 * 21 19 17 23 23 H 1.48495 * 109.46972 * 209.99893 * 21 19 17 24 24 H 1.48492 * 109.47327 * 330.00297 * 21 19 17 25 25 C 1.46925 * 118.73827 * 306.38450 * 16 15 14 26 26 C 1.53041 * 109.46187 * 299.97375 * 13 2 1 27 27 H 1.09002 * 109.47132 * 83.92051 * 1 2 3 28 28 H 1.09003 * 109.46842 * 203.92255 * 1 2 3 29 29 H 1.08998 * 109.46763 * 323.92151 * 1 2 3 30 30 H 1.08002 * 126.53614 * 359.97438 * 6 5 3 31 31 H 1.08005 * 126.54107 * 180.02562 * 7 6 5 32 32 H 0.97009 * 119.99764 * 0.02562 * 10 9 8 33 33 H 0.96993 * 120.00306 * 179.72189 * 10 9 8 34 34 H 1.08999 * 109.46067 * 180.02562 * 13 2 1 35 35 H 1.08997 * 109.49375 * 298.56588 * 14 13 2 36 36 H 1.08995 * 109.49468 * 58.66061 * 14 13 2 37 37 H 1.09002 * 109.59899 * 294.86329 * 15 14 13 38 38 H 1.08999 * 109.70020 * 174.50616 * 15 14 13 39 39 H 0.96999 * 119.99834 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.58599 * 293.81921 * 25 16 15 41 41 H 1.08997 * 109.70071 * 173.46543 * 25 16 15 42 42 H 1.08994 * 109.50013 * 301.33653 * 26 13 2 43 43 H 1.09001 * 109.49691 * 61.43425 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3536 1.1680 -0.0592 5 6 1.4042 2.4417 0.0716 6 6 1.9640 3.6801 0.2069 7 6 0.9108 4.6030 0.2325 8 6 -0.2469 3.8887 0.1122 9 6 -1.6082 4.4508 0.0917 10 7 -2.6729 3.6339 -0.0332 11 8 -1.7715 5.6522 0.1864 12 8 0.0671 2.5835 0.0216 13 6 2.1975 -1.2687 0.0006 14 6 1.8282 -2.0713 -1.2491 15 6 2.6220 -3.3814 -1.2629 16 7 2.3849 -4.0910 0.0016 17 6 1.9519 -5.3901 0.0020 18 1 1.2596 -5.7288 -0.7545 19 6 2.4028 -6.2717 0.9748 20 7 3.2132 -5.8486 1.9216 21 14 1.8592 -8.0586 0.9402 22 1 2.8181 -8.8520 0.1300 23 1 1.8223 -8.5917 2.3257 24 1 0.5055 -8.1526 0.3373 25 6 2.6218 -3.3804 1.2656 26 6 1.8281 -2.0702 1.2509 27 1 -0.3633 0.1088 -1.0219 28 1 -0.3633 -0.9394 0.4167 29 1 -0.3633 0.8306 0.6052 30 1 3.0178 3.9047 0.2811 31 1 0.9976 5.6752 0.3289 32 1 -2.5427 2.6756 -0.1092 33 1 -3.5695 4.0038 -0.0427 34 1 3.2691 -1.0693 0.0009 35 1 0.7609 -2.2925 -1.2371 36 1 2.0698 -1.4903 -2.1391 37 1 3.6851 -3.1637 -1.3660 38 1 2.2935 -4.0013 -2.0970 39 1 3.5280 -6.4645 2.6016 40 1 3.6847 -3.1627 1.3687 41 1 2.2925 -3.9977 2.1014 42 1 2.0697 -1.4886 2.1404 43 1 0.7609 -2.2915 1.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005689726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:19 Heat of formation + Delta-G solvation = -49.513061 kcal Electronic energy + Delta-G solvation = -27274.856034 eV Core-core repulsion = 23321.792871 eV Total energy + Delta-G solvation = -3953.063163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.00714 -41.15785 -40.31987 -39.01812 -36.75146 -35.02283 -34.46047 -34.06285 -32.19837 -31.55236 -30.88288 -28.09229 -27.25958 -25.70747 -23.91921 -23.83267 -22.89981 -21.90628 -21.19984 -20.54988 -19.40316 -18.81064 -18.40754 -17.93516 -17.84321 -17.56045 -16.83165 -16.29867 -15.93247 -15.59718 -15.49726 -15.33312 -15.06163 -14.80934 -14.53524 -14.42327 -14.32801 -14.23660 -14.01445 -13.92838 -13.23639 -12.95380 -12.82266 -12.74458 -12.53671 -12.09243 -11.96851 -11.91000 -11.81285 -11.52841 -11.43891 -11.26958 -11.22838 -10.89624 -10.55137 -10.05563 -9.66804 -8.56944 -7.86559 -5.43447 -0.53890 0.75689 1.11172 1.48918 1.50524 1.58903 1.80153 1.93585 1.97626 2.39290 2.50931 3.27094 3.31141 3.68198 3.68782 3.80610 3.90373 4.03359 4.17485 4.28191 4.35416 4.36351 4.47607 4.63287 4.66046 4.70036 4.77487 4.85059 4.95085 5.01713 5.06046 5.08048 5.15276 5.31181 5.33698 5.50240 5.52538 5.66107 5.72103 5.77851 6.17768 6.22962 6.46151 6.81086 7.04236 7.18185 7.84027 8.39825 9.18729 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002679 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.919656 B =10449.154941 C =10997.477439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.591 5.591 3 C 0.591 3.409 4 O -0.555 6.555 5 C -0.043 4.043 6 C -0.132 4.132 7 C -0.128 4.128 8 C -0.061 4.061 9 C 0.612 3.388 10 N -0.817 5.817 11 O -0.554 6.554 12 O -0.136 6.136 13 C 0.154 3.846 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.610 5.610 17 C -0.264 4.264 18 H 0.070 0.930 19 C -0.045 4.045 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.180 3.820 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.420 0.580 33 H 0.422 0.578 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.009 0.991 38 H 0.064 0.936 39 H 0.250 0.750 40 H -0.011 1.011 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 18.482 -4.404 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.379 3.621 4 O -0.435 6.435 5 C -0.096 4.096 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.114 4.114 9 C 0.396 3.604 10 N -0.382 5.382 11 O -0.434 6.434 12 O -0.032 6.032 13 C 0.051 3.949 14 C -0.161 4.161 15 C 0.018 3.982 16 N -0.334 5.334 17 C -0.394 4.394 18 H 0.087 0.913 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.190 1.190 25 C 0.053 3.947 26 C -0.170 4.170 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.252 0.748 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.007 0.993 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.794 18.851 -4.285 22.646 hybrid contribution 0.175 -1.335 0.295 1.378 sum -11.619 17.516 -3.990 21.395 Atomic orbital electron populations 1.22260 0.76956 1.04504 1.03843 1.48046 1.08870 1.04858 1.70310 1.17084 0.85947 0.81966 0.77140 1.90854 1.13672 1.86308 1.52714 1.22137 0.80761 0.95879 1.10873 1.22186 1.02274 0.89892 1.00935 1.22193 0.89549 1.02354 1.00726 1.22561 0.96361 0.81760 1.10764 1.16569 0.82313 0.85452 0.76090 1.43560 1.08787 1.11910 1.73897 1.90920 1.85020 1.15188 1.52277 1.84271 1.22844 1.25898 1.70182 1.20971 0.96261 0.81394 0.96256 1.22171 1.01453 0.96124 0.96345 1.21016 0.95836 0.92336 0.89049 1.44251 1.78014 1.10451 1.00691 1.19480 1.20356 0.86359 1.13204 0.91289 1.26097 0.97553 1.01790 0.98614 1.70088 1.37080 1.34965 1.15979 0.85248 0.78284 0.80314 0.76449 1.21413 1.22133 1.18968 1.20605 0.93988 0.90051 0.90029 1.22354 1.01432 0.96931 0.96258 0.90219 0.89500 0.88972 0.80682 0.79975 0.74807 0.74374 0.90977 0.90671 0.90927 0.97313 0.91705 0.94017 0.99322 0.91346 0.92434 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 8.68 127.77 1.11 2.29 16 2 N -0.59 -15.70 2.76 -826.46 -2.28 -17.98 16 3 C 0.59 16.94 7.66 86.62 0.66 17.61 16 4 O -0.56 -20.05 16.20 -4.05 -0.07 -20.11 16 5 C -0.04 -0.95 6.78 24.26 0.16 -0.79 16 6 C -0.13 -2.64 10.60 22.32 0.24 -2.40 16 7 C -0.13 -2.22 10.60 22.32 0.24 -1.98 16 8 C -0.06 -1.03 7.14 24.26 0.17 -0.86 16 9 C 0.61 9.80 8.08 86.63 0.70 10.50 16 10 N -0.82 -6.16 8.87 -175.99 -1.56 -7.72 16 11 O -0.55 -12.74 17.70 -4.07 -0.07 -12.82 16 12 O -0.14 -2.33 7.02 -7.34 -0.05 -2.39 16 13 C 0.15 5.08 2.47 45.02 0.11 5.19 16 14 C -0.12 -3.83 5.34 30.67 0.16 -3.67 16 15 C 0.14 5.77 6.52 86.36 0.56 6.33 16 16 N -0.61 -29.72 2.99 -699.12 -2.09 -31.82 16 17 C -0.26 -13.95 9.55 84.03 0.80 -13.15 16 18 H 0.07 3.51 7.83 -2.91 -0.02 3.48 16 19 C -0.04 -2.44 5.28 84.86 0.45 -1.99 16 20 N -0.94 -54.28 10.75 21.65 0.23 -54.05 16 21 Si 0.97 43.47 29.55 68.60 2.03 45.50 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 C 0.18 8.56 5.24 86.36 0.45 9.01 16 26 C -0.13 -4.71 5.32 30.67 0.16 -4.54 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.59 6.47 -2.39 -0.02 1.57 16 29 H 0.09 1.36 5.40 -2.39 -0.01 1.34 16 30 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.42 1.44 8.59 -92.70 -0.80 0.65 16 33 H 0.42 1.76 8.93 -92.71 -0.83 0.93 16 34 H 0.07 2.80 6.90 -2.39 -0.02 2.79 16 35 H 0.07 2.21 7.72 -2.39 -0.02 2.19 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.06 2.48 7.93 -2.39 -0.02 2.47 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.07 3.69 6.05 -2.39 -0.01 3.68 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.40 6.73 -2.39 -0.02 2.38 16 Total: -1.00 -71.26 354.10 1.57 -69.69 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -0.55 Total: 10.16 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 5.99 Total: 21.53 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -5.70 Total: -111.57 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.19 Total: -35.31 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -71.26 1.57 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005689726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.179 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds