Wall clock time and date at job start Tue Mar 31 2020 13:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36008 * 117.00454 * 2 1 4 4 C 1.35851 * 120.31280 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77769 * 179.72428 * 4 3 2 6 6 H 0.96999 * 119.29705 * 180.25967 * 5 4 3 7 7 C 1.36424 * 121.40849 * 0.52442 * 5 4 3 8 8 C 1.48070 * 119.71666 * 179.75544 * 7 5 4 9 9 O 1.21518 * 120.00217 * 179.72282 * 8 7 5 10 10 N 1.34778 * 120.00432 * 359.72744 * 8 7 5 11 11 C 1.46496 * 120.00294 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.52239 * 325.07449 * 11 10 8 13 13 C 1.53045 * 109.49646 * 204.99917 * 11 10 8 14 14 C 1.53044 * 109.53662 * 178.68347 * 13 11 10 15 15 C 1.53184 * 109.31388 * 61.36520 * 14 13 11 16 16 N 1.46929 * 108.77303 * 305.36090 * 15 14 13 17 17 C 1.36940 * 120.63423 * 233.58564 * 16 15 14 18 18 H 1.07997 * 120.00187 * 152.18020 * 17 16 15 19 19 C 1.38818 * 119.99766 * 332.18217 * 17 16 15 20 20 N 1.31617 * 119.99874 * 143.80934 * 19 17 16 21 21 Si 1.86805 * 119.99874 * 323.81112 * 19 17 16 22 22 H 1.48498 * 109.47022 * 269.99832 * 21 19 17 23 23 H 1.48505 * 109.46947 * 150.00074 * 21 19 17 24 24 H 1.48496 * 109.47076 * 29.99912 * 21 19 17 25 25 C 1.46921 * 118.73900 * 53.86921 * 16 15 14 26 26 C 1.36173 * 120.56327 * 359.47709 * 7 5 4 27 27 C 1.41577 * 120.32024 * 180.02562 * 3 2 1 28 28 O 1.22273 * 120.65083 * 0.03527 * 27 3 2 29 29 H 1.09005 * 109.47055 * 59.99992 * 1 2 3 30 30 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00538 * 1 2 3 32 32 H 1.07998 * 119.60818 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99758 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.46326 * 58.66097 * 13 11 10 35 35 H 1.09003 * 109.44861 * 298.69151 * 13 11 10 36 36 H 1.09005 * 109.49404 * 301.40951 * 14 13 11 37 37 H 1.09008 * 109.49534 * 181.31664 * 14 13 11 38 38 H 1.09001 * 109.58584 * 185.57965 * 15 14 13 39 39 H 1.08992 * 109.59168 * 65.15011 * 15 14 13 40 40 H 0.96997 * 119.99974 * 354.93687 * 20 19 17 41 41 H 1.08998 * 109.58992 * 65.91794 * 25 16 15 42 42 H 1.08994 * 109.59080 * 186.35128 * 25 16 15 43 43 H 1.08003 * 120.40872 * 180.27764 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3552 0.0005 5 7 1.9181 3.5669 0.0061 6 1 1.3734 4.3695 0.0102 7 6 3.2774 3.6827 0.0008 8 6 3.8996 5.0264 0.0017 9 8 5.1098 5.1356 0.0020 10 7 3.1237 6.1284 0.0023 11 6 3.7392 7.4578 0.0027 12 1 4.6568 7.4341 0.5906 13 6 2.7675 8.4705 0.6130 14 6 3.4222 9.8534 0.6439 15 6 3.7437 10.2939 -0.7876 16 7 4.5593 9.2545 -1.4303 17 6 5.7578 9.5691 -2.0133 18 1 6.5392 8.8262 -2.0764 19 6 5.9684 10.8429 -2.5232 20 7 7.1554 11.4031 -2.4250 21 14 4.5671 11.7620 -3.3487 22 1 4.5592 11.4517 -4.8009 23 1 4.7517 13.2228 -3.1556 24 1 3.2767 11.3420 -2.7457 25 6 4.0617 7.8721 -1.4411 26 6 4.0669 2.5732 0.0002 27 6 3.4599 1.2937 -0.0005 28 8 4.1431 0.2796 -0.0017 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2345 2.2973 0.0005 33 1 2.1576 6.0413 0.0017 34 1 2.5153 8.1653 1.6285 35 1 1.8602 8.5116 0.0102 36 1 4.3428 9.8072 1.2258 37 1 2.7385 10.5695 1.1000 38 1 4.2984 11.2319 -0.7654 39 1 2.8170 10.4282 -1.3455 40 1 7.8626 10.9579 -1.9326 41 1 3.1604 7.8129 -2.0511 42 1 4.8263 7.2117 -1.8500 43 1 5.1428 2.6678 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007944317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:20 Heat of formation + Delta-G solvation = -36.795617 kcal Electronic energy + Delta-G solvation = -26958.581424 eV Core-core repulsion = 23006.069731 eV Total energy + Delta-G solvation = -3952.511693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71320 -40.03673 -38.50560 -37.89636 -37.63309 -34.81122 -32.78976 -31.87337 -31.15615 -30.88340 -29.28015 -27.97629 -25.14124 -24.94451 -23.51043 -22.60900 -21.89902 -20.85260 -20.29406 -19.60051 -18.34031 -17.89273 -17.35366 -16.54094 -16.44419 -16.04909 -15.66036 -15.49579 -14.98913 -14.79458 -14.58872 -14.42925 -14.16969 -13.87968 -13.71918 -13.55780 -13.29988 -13.07903 -12.94428 -12.51283 -12.17389 -11.95362 -11.81767 -11.71319 -11.22736 -10.79154 -10.75347 -10.48142 -10.23244 -10.06783 -9.75309 -9.74231 -9.67991 -9.36268 -9.23676 -8.31141 -7.99425 -7.08068 -6.41177 -3.30574 0.41089 0.85323 2.21040 2.60708 2.65359 2.88679 3.44740 3.45219 3.52790 3.65668 3.98819 4.20069 4.30930 4.57122 4.60654 4.69051 4.71911 4.89108 4.97930 5.04907 5.12953 5.18857 5.29757 5.39010 5.45104 5.66900 5.76320 5.84938 5.87907 6.05731 6.18911 6.22140 6.22924 6.30491 6.32910 6.47940 6.61497 6.70360 6.83262 6.86175 7.17626 7.75967 7.80987 8.04205 8.40806 8.99080 9.57931 10.16538 10.99581 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.002684 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.445148 B =10431.050507 C =10818.302047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.027 3.973 5 N -0.564 5.564 6 H 0.419 0.581 7 C 0.127 3.873 8 C 0.553 3.447 9 O -0.492 6.492 10 N -0.715 5.715 11 C 0.124 3.876 12 H 0.095 0.905 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.138 3.862 16 N -0.593 5.593 17 C -0.365 4.365 18 H 0.066 0.934 19 C 0.005 3.995 20 N -0.895 5.895 21 Si 1.016 2.984 22 H -0.298 1.298 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.140 3.860 26 C -0.211 4.211 27 C 0.400 3.600 28 O -0.495 6.495 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.170 0.830 33 H 0.389 0.611 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.269 0.731 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -14.107 7.851 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.100 4.100 5 N -0.178 5.178 6 H 0.256 0.744 7 C 0.015 3.985 8 C 0.335 3.665 9 O -0.364 6.364 10 N -0.367 5.367 11 C 0.019 3.981 12 H 0.113 0.887 13 C -0.154 4.154 14 C -0.175 4.175 15 C 0.013 3.987 16 N -0.317 5.317 17 C -0.493 4.493 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.532 5.532 21 Si 0.845 3.155 22 H -0.226 1.226 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.012 3.988 26 C -0.238 4.238 27 C 0.289 3.711 28 O -0.378 6.378 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.187 0.813 33 H 0.223 0.777 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.572 -13.397 7.029 24.737 hybrid contribution -0.904 -0.893 0.689 1.445 sum -20.476 -14.290 7.718 26.135 Atomic orbital electron populations 1.23138 0.79133 1.04568 1.00906 1.86287 1.20350 1.24300 1.89013 1.20435 0.94819 0.84685 1.08441 1.21616 0.98721 0.84140 1.05488 1.40672 1.05092 1.08398 1.63675 0.74440 1.20489 0.82718 0.95910 0.99422 1.17902 0.87321 0.82838 0.78396 1.90922 1.12769 1.85440 1.47299 1.46109 1.09193 1.06802 1.74614 1.22012 0.96894 0.78235 1.00947 0.88718 1.21688 0.98032 0.95936 0.99699 1.22083 1.00254 0.94668 1.00544 1.21452 0.94604 0.92854 0.89825 1.44286 1.22084 1.01657 1.63662 1.20065 0.89648 1.00075 1.39479 0.91629 1.26129 1.01147 0.94793 0.97851 1.70870 1.04903 1.36725 1.40652 0.84649 0.77258 0.75863 0.77704 1.22566 1.21992 1.19636 1.21328 0.97562 0.88342 0.91566 1.22520 1.02513 0.90345 1.08413 1.16818 0.86125 0.89831 0.78284 1.90868 1.65729 1.37525 1.43697 0.92700 0.87871 0.92759 0.81328 0.77727 0.92488 0.92020 0.91625 0.92123 0.91284 0.95096 0.92129 0.96210 0.91739 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.09 10.33 -35.59 -0.37 -3.46 16 3 C -0.03 -0.35 6.71 -39.16 -0.26 -0.61 16 4 C 0.03 0.17 10.22 -16.81 -0.17 0.00 16 5 N -0.56 -3.40 5.26 -9.58 -0.05 -3.45 16 6 H 0.42 1.03 7.00 -40.82 -0.29 0.75 16 7 C 0.13 1.30 6.77 -82.53 -0.56 0.74 16 8 C 0.55 7.02 7.77 -12.23 -0.10 6.93 16 9 O -0.49 -8.66 15.94 5.35 0.09 -8.57 16 10 N -0.72 -7.58 5.07 -54.34 -0.28 -7.85 16 11 C 0.12 1.83 2.62 -67.58 -0.18 1.65 16 12 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 13 C -0.12 -1.43 5.35 -26.69 -0.14 -1.58 16 14 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 16 15 C 0.14 2.75 4.36 -3.71 -0.02 2.73 16 16 N -0.59 -13.50 2.71 -172.06 -0.47 -13.96 16 17 C -0.37 -10.04 9.70 -15.06 -0.15 -10.19 16 18 H 0.07 1.99 8.06 -52.49 -0.42 1.56 16 19 C 0.01 0.15 4.82 -17.43 -0.08 0.07 16 20 N -0.90 -27.02 13.70 55.49 0.76 -26.26 16 21 Si 1.02 24.34 27.00 -169.99 -4.59 19.75 16 22 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.27 -5.79 4.73 56.52 0.27 -5.52 16 25 C 0.14 2.64 6.12 -3.49 -0.02 2.62 16 26 C -0.21 -2.70 9.53 -39.03 -0.37 -3.07 16 27 C 0.40 5.68 6.78 -37.02 -0.25 5.43 16 28 O -0.49 -9.05 17.71 -11.15 -0.20 -9.25 16 29 H 0.05 0.17 7.66 -51.93 -0.40 -0.22 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.16 7.66 -51.93 -0.40 -0.24 16 32 H 0.17 0.35 6.21 -52.49 -0.33 0.02 16 33 H 0.39 2.39 6.82 -40.82 -0.28 2.11 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.07 1.52 5.82 -51.93 -0.30 1.22 16 39 H 0.03 0.60 6.60 -51.93 -0.34 0.25 16 40 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 43 H 0.17 2.35 7.58 -52.48 -0.40 1.95 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -37.48 349.79 -7.08 -44.56 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.78 Total: -0.30 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.47 Total: 3.54 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.03 Total: -51.53 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.48 Total: -21.28 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.59 Total: 19.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.48 -7.08 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007944317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.760 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds