Wall clock time and date at job start Tue Mar 31 2020 13:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36008 * 117.00454 * 2 1 4 4 C 1.35851 * 120.31280 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77769 * 179.72428 * 4 3 2 6 6 H 0.96999 * 119.29705 * 180.25967 * 5 4 3 7 7 C 1.36424 * 121.40849 * 0.52442 * 5 4 3 8 8 C 1.48070 * 119.71666 * 179.75544 * 7 5 4 9 9 O 1.21518 * 120.00217 * 179.72282 * 8 7 5 10 10 N 1.34778 * 120.00432 * 359.72744 * 8 7 5 11 11 C 1.46496 * 120.00294 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.52239 * 325.07449 * 11 10 8 13 13 C 1.53045 * 109.49646 * 204.99917 * 11 10 8 14 14 C 1.53044 * 109.53662 * 178.68347 * 13 11 10 15 15 C 1.53184 * 109.31388 * 61.36520 * 14 13 11 16 16 N 1.46929 * 108.77303 * 305.36090 * 15 14 13 17 17 C 1.36940 * 120.63423 * 233.58564 * 16 15 14 18 18 H 1.07997 * 120.00187 * 152.18020 * 17 16 15 19 19 C 1.38818 * 119.99766 * 332.18217 * 17 16 15 20 20 N 1.31617 * 119.99874 * 143.80934 * 19 17 16 21 21 Si 1.86805 * 119.99874 * 323.81112 * 19 17 16 22 22 H 1.48498 * 109.47022 * 269.99832 * 21 19 17 23 23 H 1.48505 * 109.46947 * 150.00074 * 21 19 17 24 24 H 1.48496 * 109.47076 * 29.99912 * 21 19 17 25 25 C 1.46921 * 118.73900 * 53.86921 * 16 15 14 26 26 C 1.36173 * 120.56327 * 359.47709 * 7 5 4 27 27 C 1.41577 * 120.32024 * 180.02562 * 3 2 1 28 28 O 1.22273 * 120.65083 * 0.03527 * 27 3 2 29 29 H 1.09005 * 109.47055 * 59.99992 * 1 2 3 30 30 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00538 * 1 2 3 32 32 H 1.07998 * 119.60818 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99758 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.46326 * 58.66097 * 13 11 10 35 35 H 1.09003 * 109.44861 * 298.69151 * 13 11 10 36 36 H 1.09005 * 109.49404 * 301.40951 * 14 13 11 37 37 H 1.09008 * 109.49534 * 181.31664 * 14 13 11 38 38 H 1.09001 * 109.58584 * 185.57965 * 15 14 13 39 39 H 1.08992 * 109.59168 * 65.15011 * 15 14 13 40 40 H 0.96997 * 119.99974 * 354.93687 * 20 19 17 41 41 H 1.08998 * 109.58992 * 65.91794 * 25 16 15 42 42 H 1.08994 * 109.59080 * 186.35128 * 25 16 15 43 43 H 1.08003 * 120.40872 * 180.27764 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3552 0.0005 5 7 1.9181 3.5669 0.0061 6 1 1.3734 4.3695 0.0102 7 6 3.2774 3.6827 0.0008 8 6 3.8996 5.0264 0.0017 9 8 5.1098 5.1356 0.0020 10 7 3.1237 6.1284 0.0023 11 6 3.7392 7.4578 0.0027 12 1 4.6568 7.4341 0.5906 13 6 2.7675 8.4705 0.6130 14 6 3.4222 9.8534 0.6439 15 6 3.7437 10.2939 -0.7876 16 7 4.5593 9.2545 -1.4303 17 6 5.7578 9.5691 -2.0133 18 1 6.5392 8.8262 -2.0764 19 6 5.9684 10.8429 -2.5232 20 7 7.1554 11.4031 -2.4250 21 14 4.5671 11.7620 -3.3487 22 1 4.5592 11.4517 -4.8009 23 1 4.7517 13.2228 -3.1556 24 1 3.2767 11.3420 -2.7457 25 6 4.0617 7.8721 -1.4411 26 6 4.0669 2.5732 0.0002 27 6 3.4599 1.2937 -0.0005 28 8 4.1431 0.2796 -0.0017 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2345 2.2973 0.0005 33 1 2.1576 6.0413 0.0017 34 1 2.5153 8.1653 1.6285 35 1 1.8602 8.5116 0.0102 36 1 4.3428 9.8072 1.2258 37 1 2.7385 10.5695 1.1000 38 1 4.2984 11.2319 -0.7654 39 1 2.8170 10.4282 -1.3455 40 1 7.8626 10.9579 -1.9326 41 1 3.1604 7.8129 -2.0511 42 1 4.8263 7.2117 -1.8500 43 1 5.1428 2.6678 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007944317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:19 Heat of formation + Delta-G solvation = -67.520720 kcal Electronic energy + Delta-G solvation = -26959.913764 eV Core-core repulsion = 23006.069731 eV Total energy + Delta-G solvation = -3953.844033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59832 -41.08297 -39.44128 -38.93025 -38.79478 -36.24243 -34.48093 -32.81652 -32.60833 -32.08393 -30.52055 -28.40873 -26.90680 -25.97490 -24.33790 -23.80561 -23.53557 -21.95771 -21.52078 -20.62797 -19.40230 -19.15112 -18.70535 -17.39861 -17.26807 -17.18045 -16.82203 -16.50276 -16.19047 -15.95765 -15.64471 -15.53876 -15.39766 -15.31733 -14.94101 -14.79176 -14.45663 -14.24271 -14.03539 -13.84827 -13.61100 -13.40176 -12.70482 -12.53719 -12.39081 -12.26425 -12.06277 -11.81627 -11.76139 -11.47253 -11.38867 -11.15769 -10.77357 -10.66502 -10.51590 -10.28500 -9.02303 -8.81356 -8.60768 -5.46220 -0.57768 0.10751 1.38778 1.51727 1.57068 1.60060 1.66605 1.78145 2.29507 2.51750 2.60736 2.95216 3.24234 3.50633 3.55115 3.63216 3.76314 3.83729 4.02455 4.12918 4.33290 4.36171 4.40318 4.43254 4.49033 4.57761 4.73480 4.75875 4.83387 4.92107 4.97728 5.00361 5.06955 5.13280 5.21953 5.27155 5.34570 5.54468 5.78313 5.82867 6.21098 6.24262 6.28330 6.85005 6.87863 6.91688 7.61430 8.10315 8.75032 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.002684 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.445148 B =10431.050507 C =10818.302047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.061 4.061 4 C 0.079 3.921 5 N -0.527 5.527 6 H 0.445 0.555 7 C 0.152 3.848 8 C 0.556 3.444 9 O -0.549 6.549 10 N -0.688 5.688 11 C 0.137 3.863 12 H 0.054 0.946 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.129 3.871 16 N -0.611 5.611 17 C -0.357 4.357 18 H 0.011 0.989 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 1.071 2.929 22 H -0.300 1.300 23 H -0.298 1.298 24 H -0.221 1.221 25 C 0.138 3.862 26 C -0.237 4.237 27 C 0.377 3.623 28 O -0.571 6.571 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.419 0.581 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.249 0.751 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.099 -12.979 8.693 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.111 4.111 4 C -0.050 4.050 5 N -0.141 5.141 6 H 0.288 0.712 7 C 0.037 3.963 8 C 0.340 3.660 9 O -0.425 6.425 10 N -0.341 5.341 11 C 0.031 3.969 12 H 0.073 0.927 13 C -0.142 4.142 14 C -0.171 4.171 15 C 0.004 3.996 16 N -0.337 5.337 17 C -0.486 4.486 18 H 0.029 0.971 19 C -0.248 4.248 20 N -0.574 5.574 21 Si 0.895 3.105 22 H -0.228 1.228 23 H -0.225 1.225 24 H -0.145 1.145 25 C 0.011 3.989 26 C -0.264 4.264 27 C 0.273 3.727 28 O -0.461 6.461 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.249 0.751 33 H 0.258 0.742 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.196 -12.243 7.905 30.854 hybrid contribution 1.371 -1.240 0.457 1.904 sum -25.826 -13.482 8.362 30.309 Atomic orbital electron populations 1.23532 0.76084 1.06083 1.03217 1.86243 1.23543 1.24577 1.89481 1.20099 0.93343 0.86581 1.11085 1.22332 1.00708 0.82011 0.99949 1.40790 1.03459 1.10046 1.59844 0.71245 1.19855 0.84338 0.93447 0.98637 1.18157 0.86690 0.83897 0.77282 1.90926 1.15655 1.86239 1.49647 1.45676 1.10509 1.04658 1.73280 1.21545 0.97123 0.80745 0.97531 0.92743 1.21672 0.97678 0.92530 1.02321 1.21993 1.00467 0.97684 0.96930 1.21632 0.94215 0.90928 0.92796 1.44321 1.21187 1.03975 1.64174 1.19805 0.90629 0.98923 1.39214 0.97072 1.27452 1.02756 0.96346 0.98282 1.71010 1.05809 1.37566 1.43026 0.83972 0.76136 0.74151 0.76231 1.22832 1.22489 1.14466 1.21418 0.97179 0.85570 0.94699 1.22269 1.01909 0.91353 1.10910 1.17300 0.88296 0.89170 0.77953 1.90816 1.67403 1.39184 1.48724 0.90271 0.87258 0.90107 0.75093 0.74159 0.88766 0.88274 0.94296 0.88194 0.94136 0.92553 0.94175 0.93016 0.95976 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.33 -6.53 10.33 -78.51 -0.81 -7.34 16 3 C -0.06 -1.19 6.71 22.54 0.15 -1.04 16 4 C 0.08 0.52 10.22 83.58 0.85 1.38 16 5 N -0.53 -3.38 5.26 -184.22 -0.97 -4.35 16 6 H 0.45 -1.45 7.00 -92.71 -0.65 -2.09 16 7 C 0.15 2.83 6.77 40.56 0.27 3.10 16 8 C 0.56 13.43 7.77 86.85 0.68 14.11 16 9 O -0.55 -20.41 15.94 -3.77 -0.06 -20.47 16 10 N -0.69 -11.77 5.07 -444.13 -2.25 -14.03 16 11 C 0.14 3.66 2.62 45.22 0.12 3.78 16 12 H 0.05 1.95 7.58 -2.39 -0.02 1.94 16 13 C -0.10 -1.94 5.35 30.62 0.16 -1.78 16 14 C -0.13 -3.49 6.08 30.67 0.19 -3.30 16 15 C 0.13 4.71 4.36 86.36 0.38 5.09 16 16 N -0.61 -27.55 2.71 -698.28 -1.89 -29.44 16 17 C -0.36 -20.56 9.70 84.03 0.82 -19.75 16 18 H 0.01 0.75 8.06 -2.91 -0.02 0.73 16 19 C -0.05 -2.96 4.82 84.86 0.41 -2.55 16 20 N -0.93 -59.50 13.70 21.65 0.30 -59.21 16 21 Si 1.07 49.01 27.00 68.60 1.85 50.86 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.22 -8.26 4.73 99.48 0.47 -7.79 16 25 C 0.14 5.04 6.12 86.51 0.53 5.57 16 26 C -0.24 -6.46 9.53 22.62 0.22 -6.25 16 27 C 0.38 11.39 6.78 23.93 0.16 11.55 16 28 O -0.57 -23.33 17.71 8.92 0.16 -23.17 16 29 H 0.08 0.05 7.66 -2.38 -0.02 0.03 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.01 7.66 -2.39 -0.02 0.00 16 32 H 0.23 -1.17 6.21 -2.91 -0.02 -1.18 16 33 H 0.42 2.12 6.82 -92.71 -0.63 1.49 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.04 1.71 5.82 -2.39 -0.01 1.70 16 39 H 0.06 1.81 6.60 -2.39 -0.02 1.79 16 40 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.02 0.97 7.93 -2.39 -0.02 0.95 16 43 H 0.14 4.56 7.58 -2.91 -0.02 4.54 16 Total: -1.00 -99.05 349.79 1.88 -97.17 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -0.49 Total: -1.06 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 6.04 Total: 11.05 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.82 Total: -107.03 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.71 Total: -50.98 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.85 Total: 50.86 kcal Total: -99.05 1.88 -97.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007944317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.646 kcal (2) G-P(sol) polarization free energy of solvation -99.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds