Wall clock time and date at job start Tue Mar 31 2020 13:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35521 * 116.99785 * 2 1 4 4 C 1.38826 * 120.89875 * 0.20100 * 3 2 1 5 5 C 1.38707 * 119.20010 * 180.23568 * 4 3 2 6 6 O 1.35522 * 119.47475 * 179.78943 * 5 4 3 7 7 N 1.32605 * 121.05390 * 359.80521 * 5 4 3 8 8 C 1.31602 * 121.97531 * 359.97438 * 7 5 4 9 9 C 1.39550 * 120.67201 * 359.97194 * 8 7 5 10 10 C 1.47345 * 120.55546 * 180.02562 * 9 8 7 11 11 O 1.21612 * 119.99778 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99934 * 359.97438 * 10 9 8 13 13 C 1.46505 * 120.00014 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.52035 * 34.91998 * 13 12 10 15 15 C 1.53037 * 109.49936 * 155.00172 * 13 12 10 16 16 C 1.53040 * 109.53016 * 181.32556 * 15 13 12 17 17 C 1.53195 * 109.31051 * 298.61616 * 16 15 13 18 18 N 1.46926 * 108.76708 * 54.65385 * 17 16 15 19 19 C 1.36931 * 120.63289 * 126.40565 * 18 17 16 20 20 H 1.08001 * 119.99988 * 207.66278 * 19 18 17 21 21 C 1.38809 * 119.99891 * 27.66355 * 19 18 17 22 22 N 1.31618 * 120.00290 * 17.36942 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 197.36428 * 21 19 18 24 24 H 1.48497 * 109.46839 * 60.00142 * 23 21 19 25 25 H 1.48500 * 109.47277 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47172 * 300.00420 * 23 21 19 27 27 C 1.46935 * 118.73705 * 306.38707 * 18 17 16 28 28 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47468 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.46966 * 59.99911 * 1 2 3 31 31 H 1.07999 * 120.39942 * 0.05115 * 4 3 2 32 32 H 0.96693 * 113.99423 * 270.01989 * 6 5 4 33 33 H 1.07996 * 119.66632 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00289 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.45832 * 301.33828 * 15 13 12 36 36 H 1.09001 * 109.45903 * 61.30503 * 15 13 12 37 37 H 1.08997 * 109.49738 * 58.57791 * 16 15 13 38 38 H 1.08997 * 109.50268 * 178.67820 * 16 15 13 39 39 H 1.09005 * 109.59622 * 294.87072 * 17 16 15 40 40 H 1.09001 * 109.58746 * 174.43441 * 17 16 15 41 41 H 0.96998 * 120.00359 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.58209 * 293.81576 * 27 18 17 43 43 H 1.08997 * 109.58595 * 173.40093 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3064 2.3835 0.0042 5 6 1.9724 3.6002 -0.0009 6 8 1.2577 4.7516 -0.0012 7 7 3.2973 3.6548 -0.0059 8 6 4.0396 2.5680 -0.0056 9 6 3.4499 1.3032 0.0004 10 6 4.2835 0.0882 0.0013 11 8 3.7589 -1.0090 0.0061 12 7 5.6271 0.1928 -0.0044 13 6 6.4559 -1.0153 -0.0042 14 1 5.9650 -1.7939 -0.5881 15 6 7.8206 -0.6987 -0.6203 16 6 8.6751 -1.9680 -0.6506 17 6 8.8950 -2.4650 0.7817 18 7 7.5872 -2.6336 1.4296 19 6 7.2479 -3.8230 2.0173 20 1 6.2102 -4.1141 2.0872 21 6 8.2376 -4.6544 2.5232 22 7 9.4426 -4.1781 2.7544 23 14 7.8594 -6.4494 2.8759 24 1 7.4329 -7.1210 1.6219 25 1 9.0757 -7.1169 3.4053 26 1 6.7689 -6.5375 3.8801 27 6 6.6504 -1.5016 1.4353 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2269 2.3514 0.0083 32 1 1.0471 5.0835 -0.8847 33 1 5.1160 2.6559 -0.0102 34 1 6.0455 1.0679 -0.0087 35 1 7.6833 -0.3291 -1.6364 36 1 8.3215 0.0621 -0.0217 37 1 8.1631 -2.7375 -1.2283 38 1 9.6382 -1.7474 -1.1108 39 1 9.4856 -1.7349 1.3354 40 1 9.4183 -3.4209 0.7605 41 1 10.1341 -4.7590 3.1082 42 1 7.0580 -0.6932 2.0423 43 1 5.6927 -1.8220 1.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008567967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:28 Heat of formation + Delta-G solvation = -47.383455 kcal Electronic energy + Delta-G solvation = -27192.581980 eV Core-core repulsion = 23239.611164 eV Total energy + Delta-G solvation = -3952.970816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29539 -39.37780 -38.99256 -37.38165 -36.94904 -34.28780 -32.50447 -31.90462 -31.02989 -30.41692 -28.60036 -27.70744 -25.24842 -24.59384 -23.35118 -22.18718 -21.95344 -20.41701 -19.66961 -19.40736 -17.91443 -17.69697 -17.05180 -16.69167 -16.27450 -15.63591 -15.33861 -15.17336 -14.77361 -14.70906 -14.60891 -14.04295 -13.67677 -13.52413 -13.24202 -13.02604 -12.93169 -12.38290 -12.31740 -12.31064 -11.91239 -11.84300 -11.76251 -11.05933 -10.85829 -10.75302 -10.25152 -10.23913 -10.21257 -9.87133 -9.80325 -9.60176 -9.52845 -9.40207 -9.16512 -8.76878 -8.35710 -6.63479 -5.74596 -3.16313 0.27529 0.88895 2.72174 2.77095 3.19744 3.28184 3.43985 3.48281 3.51642 3.62641 4.13726 4.36899 4.50102 4.56921 4.72901 4.80535 4.93818 5.02652 5.10828 5.24263 5.30352 5.39912 5.46870 5.58092 5.65868 5.75032 5.89205 6.11625 6.18889 6.27610 6.55766 6.64454 6.70132 6.72719 6.80739 6.88248 7.02514 7.04413 7.39454 7.48224 7.68087 7.74801 7.86879 8.44594 8.51518 9.26242 9.88652 10.44268 11.34177 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003036 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.338055 B = 9219.941819 C =10183.808335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.267 6.267 3 C 0.237 3.763 4 C -0.289 4.289 5 C 0.365 3.635 6 O -0.480 6.480 7 N -0.530 5.530 8 C 0.195 3.805 9 C -0.227 4.227 10 C 0.561 3.439 11 O -0.512 6.512 12 N -0.719 5.719 13 C 0.128 3.872 14 H 0.087 0.913 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.905 5.905 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.142 3.858 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.172 0.828 34 H 0.392 0.608 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 16.328 -9.910 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.175 6.175 3 C 0.180 3.820 4 C -0.312 4.312 5 C 0.188 3.812 6 O -0.288 6.288 7 N -0.252 5.252 8 C 0.037 3.963 9 C -0.233 4.233 10 C 0.346 3.654 11 O -0.388 6.388 12 N -0.371 5.371 13 C 0.023 3.977 14 H 0.106 0.894 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.014 3.986 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.189 0.811 34 H 0.226 0.774 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.353 15.939 -9.219 23.346 hybrid contribution -0.684 -0.870 -0.203 1.125 sum -15.036 15.069 -9.421 23.279 Atomic orbital electron populations 1.23290 0.77930 1.05053 1.01481 1.86434 1.21417 1.24413 1.85195 1.19171 0.90933 0.84927 0.86936 1.22091 1.02231 0.91635 1.15203 1.18973 0.86598 0.84941 0.90705 1.84710 1.71228 1.38736 1.34135 1.67196 1.06461 1.33244 1.18296 1.22666 0.99817 0.84897 0.88960 1.20659 0.91557 0.96273 1.14852 1.17592 0.82220 0.87965 0.77590 1.90872 1.72565 1.27098 1.48228 1.46042 1.05487 1.10241 1.75338 1.21760 0.89849 0.85646 1.00472 0.89443 1.21685 0.95119 0.99244 0.99279 1.22178 0.97954 0.96072 1.01714 1.20850 0.87245 1.00891 0.86894 1.43996 1.14025 1.09396 1.63618 1.19189 0.92898 0.94288 1.31587 0.91594 1.25009 0.96676 0.99232 0.98703 1.70028 1.03216 1.34320 1.47363 0.86353 0.77016 0.85181 0.78166 1.20988 1.21671 1.20871 1.21192 0.94711 0.90779 0.91896 0.87288 0.92127 0.92266 0.83146 0.73594 0.81098 0.77429 0.93028 0.92165 0.92418 0.92712 0.96291 0.89269 0.93634 0.96438 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.27 -3.52 8.71 -39.56 -0.34 -3.86 16 3 C 0.24 2.92 6.74 -38.36 -0.26 2.66 16 4 C -0.29 -2.77 9.02 -39.19 -0.35 -3.12 16 5 C 0.36 3.68 7.73 -17.04 -0.13 3.55 16 6 O -0.48 -3.81 13.54 -18.26 -0.25 -4.06 16 7 N -0.53 -5.98 10.36 -13.04 -0.14 -6.11 16 8 C 0.20 2.08 10.71 -17.16 -0.18 1.90 16 9 C -0.23 -2.95 5.90 -104.70 -0.62 -3.56 16 10 C 0.56 9.01 7.73 -12.56 -0.10 8.91 16 11 O -0.51 -10.44 14.94 -16.03 -0.24 -10.68 16 12 N -0.72 -10.37 5.03 -54.79 -0.28 -10.65 16 13 C 0.13 2.29 2.60 -67.81 -0.18 2.12 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 16 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 17 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 18 N -0.59 -15.07 2.99 -172.31 -0.52 -15.59 16 19 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 20 H 0.07 1.89 7.89 -52.49 -0.41 1.47 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 23 Si 0.90 22.25 29.59 -169.99 -5.03 17.23 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.14 3.13 6.09 -3.71 -0.02 3.10 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 30 H 0.06 0.33 7.72 -51.93 -0.40 -0.07 16 31 H 0.15 1.03 6.45 -52.49 -0.34 0.69 16 32 H 0.41 1.03 9.06 45.56 0.41 1.44 16 33 H 0.17 1.31 6.41 -52.49 -0.34 0.97 16 34 H 0.39 4.20 6.65 -40.82 -0.27 3.93 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -36.31 354.00 -7.20 -43.51 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.96 Total: 2.14 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.40 Total: 8.61 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.31 Total: -58.21 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.83 Total: -18.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.31 -7.20 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008567967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.877 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds