Wall clock time and date at job start Tue Mar 31 2020 13:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35521 * 116.99785 * 2 1 4 4 C 1.38826 * 120.89875 * 0.20100 * 3 2 1 5 5 C 1.38707 * 119.20010 * 180.23568 * 4 3 2 6 6 O 1.35522 * 119.47475 * 179.78943 * 5 4 3 7 7 N 1.32605 * 121.05390 * 359.80521 * 5 4 3 8 8 C 1.31602 * 121.97531 * 359.97438 * 7 5 4 9 9 C 1.39550 * 120.67201 * 359.97194 * 8 7 5 10 10 C 1.47345 * 120.55546 * 180.02562 * 9 8 7 11 11 O 1.21612 * 119.99778 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99934 * 359.97438 * 10 9 8 13 13 C 1.46505 * 120.00014 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.52035 * 34.91998 * 13 12 10 15 15 C 1.53037 * 109.49936 * 155.00172 * 13 12 10 16 16 C 1.53040 * 109.53016 * 181.32556 * 15 13 12 17 17 C 1.53195 * 109.31051 * 298.61616 * 16 15 13 18 18 N 1.46926 * 108.76708 * 54.65385 * 17 16 15 19 19 C 1.36931 * 120.63289 * 126.40565 * 18 17 16 20 20 H 1.08001 * 119.99988 * 207.66278 * 19 18 17 21 21 C 1.38809 * 119.99891 * 27.66355 * 19 18 17 22 22 N 1.31618 * 120.00290 * 17.36942 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 197.36428 * 21 19 18 24 24 H 1.48497 * 109.46839 * 60.00142 * 23 21 19 25 25 H 1.48500 * 109.47277 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47172 * 300.00420 * 23 21 19 27 27 C 1.46935 * 118.73705 * 306.38707 * 18 17 16 28 28 H 1.09000 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47468 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.46966 * 59.99911 * 1 2 3 31 31 H 1.07999 * 120.39942 * 0.05115 * 4 3 2 32 32 H 0.96693 * 113.99423 * 270.01989 * 6 5 4 33 33 H 1.07996 * 119.66632 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00289 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.45832 * 301.33828 * 15 13 12 36 36 H 1.09001 * 109.45903 * 61.30503 * 15 13 12 37 37 H 1.08997 * 109.49738 * 58.57791 * 16 15 13 38 38 H 1.08997 * 109.50268 * 178.67820 * 16 15 13 39 39 H 1.09005 * 109.59622 * 294.87072 * 17 16 15 40 40 H 1.09001 * 109.58746 * 174.43441 * 17 16 15 41 41 H 0.96998 * 120.00359 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.58209 * 293.81576 * 27 18 17 43 43 H 1.08997 * 109.58595 * 173.40093 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3064 2.3835 0.0042 5 6 1.9724 3.6002 -0.0009 6 8 1.2577 4.7516 -0.0012 7 7 3.2973 3.6548 -0.0059 8 6 4.0396 2.5680 -0.0056 9 6 3.4499 1.3032 0.0004 10 6 4.2835 0.0882 0.0013 11 8 3.7589 -1.0090 0.0061 12 7 5.6271 0.1928 -0.0044 13 6 6.4559 -1.0153 -0.0042 14 1 5.9650 -1.7939 -0.5881 15 6 7.8206 -0.6987 -0.6203 16 6 8.6751 -1.9680 -0.6506 17 6 8.8950 -2.4650 0.7817 18 7 7.5872 -2.6336 1.4296 19 6 7.2479 -3.8230 2.0173 20 1 6.2102 -4.1141 2.0872 21 6 8.2376 -4.6544 2.5232 22 7 9.4426 -4.1781 2.7544 23 14 7.8594 -6.4494 2.8759 24 1 7.4329 -7.1210 1.6219 25 1 9.0757 -7.1169 3.4053 26 1 6.7689 -6.5375 3.8801 27 6 6.6504 -1.5016 1.4353 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2269 2.3514 0.0083 32 1 1.0471 5.0835 -0.8847 33 1 5.1160 2.6559 -0.0102 34 1 6.0455 1.0679 -0.0087 35 1 7.6833 -0.3291 -1.6364 36 1 8.3215 0.0621 -0.0217 37 1 8.1631 -2.7375 -1.2283 38 1 9.6382 -1.7474 -1.1108 39 1 9.4856 -1.7349 1.3354 40 1 9.4183 -3.4209 0.7605 41 1 10.1341 -4.7590 3.1082 42 1 7.0580 -0.6932 2.0423 43 1 5.6927 -1.8220 1.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008567967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:27 Heat of formation + Delta-G solvation = -77.170913 kcal Electronic energy + Delta-G solvation = -27193.873661 eV Core-core repulsion = 23239.611164 eV Total energy + Delta-G solvation = -3954.262497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16032 -40.62408 -39.79578 -38.87101 -37.80755 -35.92108 -34.19348 -32.77423 -32.32448 -32.00529 -30.00133 -28.46051 -27.24723 -25.56941 -24.20394 -23.86985 -23.45310 -21.68596 -21.08077 -20.33526 -18.94647 -18.73834 -18.51708 -17.90257 -17.08165 -17.01677 -16.55426 -16.26292 -16.11127 -15.93816 -15.69566 -15.46101 -15.21242 -14.86799 -14.78242 -14.20112 -14.06890 -14.03380 -13.66582 -13.37667 -13.02064 -12.98502 -12.72834 -12.58388 -12.54755 -12.49363 -12.13448 -11.96204 -11.74437 -11.57144 -11.29465 -11.16857 -10.61031 -10.55570 -10.28041 -10.19365 -9.93616 -8.68530 -7.90171 -5.35278 -0.55685 0.08124 1.44155 1.46517 1.54005 1.75009 2.02493 2.08520 2.45625 2.51375 2.67939 3.23616 3.41050 3.53927 3.64248 3.76290 3.90787 4.09231 4.14788 4.16095 4.28070 4.29787 4.33513 4.40472 4.50633 4.57731 4.65556 4.70003 4.84283 4.94377 5.05020 5.15014 5.17639 5.19216 5.30488 5.48272 5.57612 5.64090 5.78521 6.08220 6.37198 6.50846 6.59931 6.75180 7.13326 7.28656 7.83446 8.32985 9.15295 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003036 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.338055 B = 9219.941819 C =10183.808335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.225 3.775 4 C -0.281 4.281 5 C 0.372 3.628 6 O -0.483 6.483 7 N -0.546 5.546 8 C 0.210 3.790 9 C -0.253 4.253 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.704 5.704 13 C 0.145 3.855 14 H 0.058 0.942 15 C -0.105 4.105 16 C -0.130 4.130 17 C 0.170 3.830 18 N -0.607 5.607 19 C -0.269 4.269 20 H 0.052 0.948 21 C -0.043 4.043 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.145 3.855 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.429 0.571 33 H 0.199 0.801 34 H 0.413 0.587 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.022 0.978 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 18.688 -11.180 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.213 6.213 3 C 0.169 3.831 4 C -0.303 4.303 5 C 0.195 3.805 6 O -0.295 6.295 7 N -0.268 5.268 8 C 0.051 3.949 9 C -0.260 4.260 10 C 0.349 3.651 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.038 3.962 14 H 0.076 0.924 15 C -0.143 4.143 16 C -0.169 4.169 17 C 0.045 3.955 18 N -0.331 5.331 19 C -0.400 4.400 20 H 0.069 0.931 21 C -0.239 4.239 22 N -0.574 5.574 23 Si 0.793 3.207 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.205 1.205 27 C 0.018 3.982 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.196 0.804 32 H 0.293 0.707 33 H 0.216 0.784 34 H 0.252 0.748 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.105 18.382 -10.525 26.016 hybrid contribution -0.580 -1.500 0.222 1.623 sum -15.685 16.883 -10.303 25.243 Atomic orbital electron populations 1.23587 0.75601 1.06081 1.03346 1.86390 1.24092 1.25496 1.85275 1.19435 0.91075 0.85587 0.87052 1.22248 1.03424 0.90341 1.14240 1.19163 0.86501 0.85693 0.89117 1.84663 1.70735 1.37805 1.36311 1.67306 1.07196 1.33160 1.19179 1.22997 1.00977 0.83734 0.87197 1.20510 0.91784 0.95611 1.18052 1.18082 0.82553 0.88351 0.76127 1.90842 1.73530 1.29371 1.50732 1.45755 1.04961 1.10184 1.74766 1.21252 0.91545 0.86407 0.96982 0.92391 1.21627 0.92771 0.98230 1.01622 1.22015 1.00106 0.97032 0.97751 1.20743 0.85923 0.98965 0.89831 1.44227 1.15192 1.09605 1.64101 1.19362 0.92527 0.96010 1.32063 0.93055 1.25706 0.96564 1.02844 0.98813 1.70157 1.03822 1.35403 1.48044 0.85386 0.76871 0.80459 0.78011 1.20532 1.21154 1.20521 1.21222 0.92420 0.89811 0.94793 0.86888 0.90638 0.89875 0.80408 0.70712 0.78422 0.74843 0.89190 0.90258 0.93496 0.89582 0.97577 0.92737 0.93826 0.95977 0.95486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.30 -8.07 8.71 -67.88 -0.59 -8.66 16 3 C 0.22 5.37 6.74 23.06 0.16 5.53 16 4 C -0.28 -4.73 9.02 22.52 0.20 -4.52 16 5 C 0.37 6.48 7.73 84.69 0.65 7.13 16 6 O -0.48 -6.07 13.54 -88.26 -1.20 -7.27 16 7 N -0.55 -10.89 10.36 -307.94 -3.19 -14.09 16 8 C 0.21 4.01 10.71 85.04 0.91 4.92 16 9 C -0.25 -6.38 5.90 -19.91 -0.12 -6.49 16 10 C 0.56 18.17 7.73 86.64 0.67 18.84 16 11 O -0.57 -24.14 14.94 16.30 0.24 -23.90 16 12 N -0.70 -19.58 5.03 -445.51 -2.24 -21.82 16 13 C 0.14 5.15 2.60 45.07 0.12 5.27 16 14 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 15 C -0.10 -3.05 5.35 30.62 0.16 -2.88 16 16 C -0.13 -4.63 6.08 30.67 0.19 -4.45 16 17 C 0.17 8.21 5.31 86.36 0.46 8.67 16 18 N -0.61 -32.22 2.99 -699.08 -2.09 -34.32 16 19 C -0.27 -15.95 9.59 84.03 0.81 -15.14 16 20 H 0.05 3.11 7.89 -2.91 -0.02 3.09 16 21 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 22 N -0.93 -55.79 11.19 21.65 0.24 -55.55 16 23 Si 0.97 46.85 29.59 68.60 2.03 48.88 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 27 C 0.14 6.56 6.09 86.36 0.53 7.09 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 0.83 7.70 -2.39 -0.02 0.81 16 30 H 0.08 0.76 7.72 -2.39 -0.02 0.74 16 31 H 0.18 1.86 6.45 -2.91 -0.02 1.84 16 32 H 0.43 0.64 9.06 -74.06 -0.67 -0.03 16 33 H 0.20 2.40 6.41 -2.91 -0.02 2.39 16 34 H 0.41 7.77 6.65 -92.71 -0.62 7.16 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.05 2.98 6.04 -2.39 -0.01 2.97 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.35 7.93 -2.39 -0.02 1.34 16 Total: -1.00 -83.27 354.00 -0.76 -84.03 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -0.22 Total: 9.62 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.27 Total: 23.07 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -7.29 Total: -125.77 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.54 Total: -39.83 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -83.27 -0.76 -84.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008567967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.854 kcal (2) G-P(sol) polarization free energy of solvation -83.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds