Wall clock time and date at job start Tue Mar 31 2020 13:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35529 * 116.99784 * 2 1 4 4 C 1.38820 * 120.89513 * 0.02562 * 3 2 1 5 5 C 1.38713 * 119.19486 * 179.97438 * 4 3 2 6 6 O 1.35526 * 119.46801 * 180.02562 * 5 4 3 7 7 N 1.32593 * 121.05544 * 0.02562 * 5 4 3 8 8 C 1.31616 * 121.97504 * 359.69909 * 7 5 4 9 9 C 1.39535 * 120.67023 * 0.58743 * 8 7 5 10 10 C 1.47346 * 120.55819 * 179.69828 * 9 8 7 11 11 O 1.21608 * 120.00173 * 179.72568 * 10 9 8 12 12 N 1.34772 * 119.99346 * 359.73111 * 10 9 8 13 13 C 1.46507 * 119.99828 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.49540 * 325.06414 * 13 12 10 15 15 C 1.53036 * 109.49666 * 204.99967 * 13 12 10 16 16 C 1.53045 * 109.53497 * 178.68271 * 15 13 12 17 17 C 1.53198 * 109.31342 * 61.36427 * 16 15 13 18 18 N 1.46925 * 108.77376 * 305.36486 * 17 16 15 19 19 C 1.36931 * 120.62846 * 233.58067 * 18 17 16 20 20 H 1.08008 * 119.99843 * 152.40033 * 19 18 17 21 21 C 1.38812 * 120.00461 * 332.40196 * 19 18 17 22 22 N 1.31624 * 119.99771 * 334.91471 * 21 19 18 23 23 Si 1.86796 * 120.00026 * 154.90837 * 21 19 18 24 24 H 1.48503 * 109.47037 * 90.00433 * 23 21 19 25 25 H 1.48498 * 109.47658 * 330.00491 * 23 21 19 26 26 H 1.48500 * 109.47270 * 210.00244 * 23 21 19 27 27 C 1.46931 * 118.73724 * 53.86046 * 18 17 16 28 28 H 1.09001 * 109.47110 * 300.00548 * 1 2 3 29 29 H 1.08999 * 109.46874 * 60.00209 * 1 2 3 30 30 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.39930 * 359.95570 * 4 3 2 32 32 H 0.96693 * 113.99712 * 90.00002 * 6 5 4 33 33 H 1.08003 * 119.66091 * 180.29376 * 8 7 5 34 34 H 0.96999 * 120.00643 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46347 * 58.66436 * 15 13 12 36 36 H 1.09003 * 109.45326 * 298.69267 * 15 13 12 37 37 H 1.08998 * 109.50167 * 301.41524 * 16 15 13 38 38 H 1.09002 * 109.52418 * 181.32924 * 16 15 13 39 39 H 1.08999 * 109.58512 * 185.57589 * 17 16 15 40 40 H 1.09004 * 109.58311 * 65.14992 * 17 16 15 41 41 H 0.96996 * 120.00175 * 354.25433 * 22 21 19 42 42 H 1.09000 * 109.58814 * 65.92708 * 27 18 17 43 43 H 1.09000 * 109.58530 * 186.34896 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0021 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5679 0.0054 9 6 3.4500 1.3033 -0.0010 10 6 4.2835 0.0882 -0.0022 11 8 3.7589 -1.0090 -0.0028 12 7 5.6271 0.1928 -0.0026 13 6 6.4559 -1.0153 -0.0033 14 1 5.9673 -1.7919 0.5850 15 6 7.8232 -0.6971 0.6060 16 6 8.6781 -1.9661 0.6358 17 6 8.8916 -2.4670 -0.7961 18 7 7.5809 -2.6373 -1.4378 19 6 7.2391 -3.8282 -2.0210 20 1 6.2010 -4.1191 -2.0866 21 6 8.2268 -4.6616 -2.5279 22 7 9.3821 -4.1578 -2.9071 23 14 7.9161 -6.4979 -2.6716 24 1 7.3283 -6.7978 -4.0019 25 1 6.9740 -6.9256 -1.6064 26 1 9.1991 -7.2303 -2.5210 27 6 6.6464 -1.5036 -1.4473 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2270 2.3513 0.0002 32 1 1.0506 5.0851 0.8858 33 1 5.1161 2.6559 0.0096 34 1 6.0455 1.0679 -0.0025 35 1 7.6904 -0.3248 1.6218 36 1 8.3214 0.0622 0.0032 37 1 8.1689 -2.7343 1.2178 38 1 9.6433 -1.7446 1.0914 39 1 9.4149 -3.4229 -0.7746 40 1 9.4798 -1.7385 -1.3542 41 1 9.5144 -3.1970 -2.9111 42 1 7.0552 -0.6981 -2.0575 43 1 5.6878 -1.8236 -1.8558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008567968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:31 Heat of formation + Delta-G solvation = -50.040818 kcal Electronic energy + Delta-G solvation = -27235.726504 eV Core-core repulsion = 23282.640456 eV Total energy + Delta-G solvation = -3953.086048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32893 -39.43625 -39.02339 -37.51334 -37.01960 -34.48290 -32.64048 -31.93908 -31.08113 -30.35381 -28.62507 -27.73742 -25.07370 -24.63414 -23.38330 -22.37555 -21.90258 -20.48097 -19.69407 -19.43899 -17.95810 -17.74462 -17.32323 -17.08918 -16.30359 -15.67996 -15.42423 -15.20734 -14.79087 -14.75970 -14.33175 -14.07592 -13.75878 -13.59372 -13.46478 -13.12758 -13.01801 -12.65023 -12.35172 -12.28766 -11.99606 -11.93164 -11.84093 -11.15823 -10.71384 -10.67793 -10.35385 -10.28575 -10.04906 -9.97354 -9.95612 -9.57120 -9.49426 -9.29957 -9.19560 -8.86456 -8.26061 -6.84487 -6.02645 -3.18232 0.24168 0.85740 2.68651 2.73942 3.16483 3.22687 3.54836 3.58595 3.58855 3.74774 4.10431 4.33723 4.47078 4.65271 4.70647 4.78513 4.89768 4.99287 5.07946 5.19771 5.23475 5.32197 5.38412 5.45513 5.59746 5.62691 5.85670 5.97028 6.06094 6.15092 6.39934 6.45929 6.58161 6.60543 6.73115 6.78809 6.91450 7.00463 7.09348 7.20615 7.45033 7.68477 8.08443 8.41318 8.62776 9.15608 9.89496 10.31740 11.26042 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003041 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.979335 B = 9206.409911 C =10151.838583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.267 6.267 3 C 0.237 3.763 4 C -0.289 4.289 5 C 0.365 3.635 6 O -0.480 6.480 7 N -0.530 5.530 8 C 0.195 3.805 9 C -0.227 4.227 10 C 0.561 3.439 11 O -0.511 6.511 12 N -0.720 5.720 13 C 0.128 3.872 14 H 0.089 0.911 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.595 5.595 19 C -0.346 4.346 20 H 0.057 0.943 21 C -0.025 4.025 22 N -0.918 5.918 23 Si 1.066 2.934 24 H -0.294 1.294 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.144 3.856 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.172 0.828 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.017 0.983 41 H 0.268 0.732 42 H 0.016 0.984 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 16.539 10.372 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.175 6.175 3 C 0.181 3.819 4 C -0.311 4.311 5 C 0.188 3.812 6 O -0.288 6.288 7 N -0.252 5.252 8 C 0.037 3.963 9 C -0.234 4.234 10 C 0.347 3.653 11 O -0.386 6.386 12 N -0.372 5.372 13 C 0.023 3.977 14 H 0.107 0.893 15 C -0.154 4.154 16 C -0.173 4.173 17 C 0.021 3.979 18 N -0.319 5.319 19 C -0.475 4.475 20 H 0.075 0.925 21 C -0.226 4.226 22 N -0.558 5.558 23 Si 0.895 3.105 24 H -0.222 1.222 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.016 3.984 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.189 0.811 34 H 0.226 0.774 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.107 14.763 9.349 22.458 hybrid contribution -1.341 1.573 0.790 2.213 sum -15.449 16.336 10.139 24.665 Atomic orbital electron populations 1.23295 0.77881 1.05084 1.01500 1.86436 1.21464 1.24404 1.85175 1.19172 0.90917 0.84950 0.86892 1.22097 1.02257 0.91618 1.15165 1.18973 0.86583 0.84960 0.90637 1.84709 1.71231 1.38701 1.34156 1.67196 1.06476 1.33222 1.18301 1.22657 0.99794 0.84902 0.88985 1.20641 0.91566 0.96225 1.14966 1.17599 0.82188 0.88003 0.77556 1.90876 1.72540 1.27108 1.48119 1.46026 1.05526 1.10165 1.75481 1.21816 0.89807 0.85730 1.00314 0.89334 1.21682 0.95107 0.99008 0.99565 1.22056 0.98246 0.96336 1.00709 1.21016 0.87976 1.00092 0.88849 1.44082 1.13951 1.09830 1.64012 1.20021 0.94838 0.96023 1.36624 0.92514 1.25838 0.95005 1.05843 0.95923 1.70760 1.26683 1.15005 1.43397 0.83539 0.75346 0.75614 0.75977 1.22195 1.21826 1.21203 1.21275 0.94804 0.90353 0.91923 0.92245 0.92103 0.87262 0.83105 0.73562 0.81143 0.77422 0.92718 0.92165 0.92037 0.92475 0.90009 0.96462 0.92088 0.96592 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.27 -3.53 8.71 -39.58 -0.34 -3.88 16 3 C 0.24 2.93 6.74 -38.36 -0.26 2.67 16 4 C -0.29 -2.76 9.02 -39.19 -0.35 -3.11 16 5 C 0.37 3.67 7.73 -17.05 -0.13 3.54 16 6 O -0.48 -3.78 13.54 -18.27 -0.25 -4.03 16 7 N -0.53 -5.96 10.37 -13.04 -0.14 -6.09 16 8 C 0.20 2.07 10.71 -17.16 -0.18 1.89 16 9 C -0.23 -2.95 5.90 -104.70 -0.62 -3.57 16 10 C 0.56 9.04 7.73 -12.56 -0.10 8.94 16 11 O -0.51 -10.49 14.94 -16.03 -0.24 -10.73 16 12 N -0.72 -10.37 5.03 -54.57 -0.27 -10.64 16 13 C 0.13 2.30 2.62 -67.59 -0.18 2.13 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 16 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 17 C 0.15 3.39 4.69 -3.71 -0.02 3.37 16 18 N -0.59 -15.23 2.85 -172.05 -0.49 -15.72 16 19 C -0.35 -9.99 9.49 -15.06 -0.14 -10.13 16 20 H 0.06 1.69 7.95 -52.48 -0.42 1.27 16 21 C -0.02 -0.71 4.68 -17.43 -0.08 -0.79 16 22 N -0.92 -27.72 12.40 55.49 0.69 -27.03 16 23 Si 1.07 25.90 29.99 -169.99 -5.10 20.80 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.14 3.18 6.12 -3.48 -0.02 3.16 16 28 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 29 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.15 1.02 6.45 -52.49 -0.34 0.68 16 32 H 0.41 1.01 9.06 45.56 0.41 1.42 16 33 H 0.17 1.30 6.41 -52.48 -0.34 0.96 16 34 H 0.39 4.17 6.65 -40.82 -0.27 3.90 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 2.13 6.29 -51.93 -0.33 1.80 16 40 H 0.02 0.40 7.87 -51.93 -0.41 0.00 16 41 H 0.27 8.13 6.72 -40.82 -0.27 7.85 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.46 7.93 -51.93 -0.41 1.05 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -37.25 353.02 -7.11 -44.36 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.90 Total: 2.96 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.39 Total: 4.68 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.21 Total: -59.48 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.83 Total: -18.64 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.10 Total: 20.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.25 -7.11 -44.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008567968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.676 kcal (2) G-P(sol) polarization free energy of solvation -37.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds