Wall clock time and date at job start Tue Mar 31 2020 13:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35529 * 116.99784 * 2 1 4 4 C 1.38820 * 120.89513 * 0.02562 * 3 2 1 5 5 C 1.38713 * 119.19486 * 179.97438 * 4 3 2 6 6 O 1.35526 * 119.46801 * 180.02562 * 5 4 3 7 7 N 1.32593 * 121.05544 * 0.02562 * 5 4 3 8 8 C 1.31616 * 121.97504 * 359.69909 * 7 5 4 9 9 C 1.39535 * 120.67023 * 0.58743 * 8 7 5 10 10 C 1.47346 * 120.55819 * 179.69828 * 9 8 7 11 11 O 1.21608 * 120.00173 * 179.72568 * 10 9 8 12 12 N 1.34772 * 119.99346 * 359.73111 * 10 9 8 13 13 C 1.46507 * 119.99828 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.49540 * 325.06414 * 13 12 10 15 15 C 1.53036 * 109.49666 * 204.99967 * 13 12 10 16 16 C 1.53045 * 109.53497 * 178.68271 * 15 13 12 17 17 C 1.53198 * 109.31342 * 61.36427 * 16 15 13 18 18 N 1.46925 * 108.77376 * 305.36486 * 17 16 15 19 19 C 1.36931 * 120.62846 * 233.58067 * 18 17 16 20 20 H 1.08008 * 119.99843 * 152.40033 * 19 18 17 21 21 C 1.38812 * 120.00461 * 332.40196 * 19 18 17 22 22 N 1.31624 * 119.99771 * 334.91471 * 21 19 18 23 23 Si 1.86796 * 120.00026 * 154.90837 * 21 19 18 24 24 H 1.48503 * 109.47037 * 90.00433 * 23 21 19 25 25 H 1.48498 * 109.47658 * 330.00491 * 23 21 19 26 26 H 1.48500 * 109.47270 * 210.00244 * 23 21 19 27 27 C 1.46931 * 118.73724 * 53.86046 * 18 17 16 28 28 H 1.09001 * 109.47110 * 300.00548 * 1 2 3 29 29 H 1.08999 * 109.46874 * 60.00209 * 1 2 3 30 30 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.39930 * 359.95570 * 4 3 2 32 32 H 0.96693 * 113.99712 * 90.00002 * 6 5 4 33 33 H 1.08003 * 119.66091 * 180.29376 * 8 7 5 34 34 H 0.96999 * 120.00643 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46347 * 58.66436 * 15 13 12 36 36 H 1.09003 * 109.45326 * 298.69267 * 15 13 12 37 37 H 1.08998 * 109.50167 * 301.41524 * 16 15 13 38 38 H 1.09002 * 109.52418 * 181.32924 * 16 15 13 39 39 H 1.08999 * 109.58512 * 185.57589 * 17 16 15 40 40 H 1.09004 * 109.58311 * 65.14992 * 17 16 15 41 41 H 0.96996 * 120.00175 * 354.25433 * 22 21 19 42 42 H 1.09000 * 109.58814 * 65.92708 * 27 18 17 43 43 H 1.09000 * 109.58530 * 186.34896 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0021 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5679 0.0054 9 6 3.4500 1.3033 -0.0010 10 6 4.2835 0.0882 -0.0022 11 8 3.7589 -1.0090 -0.0028 12 7 5.6271 0.1928 -0.0026 13 6 6.4559 -1.0153 -0.0033 14 1 5.9673 -1.7919 0.5850 15 6 7.8232 -0.6971 0.6060 16 6 8.6781 -1.9661 0.6358 17 6 8.8916 -2.4670 -0.7961 18 7 7.5809 -2.6373 -1.4378 19 6 7.2391 -3.8282 -2.0210 20 1 6.2010 -4.1191 -2.0866 21 6 8.2268 -4.6616 -2.5279 22 7 9.3821 -4.1578 -2.9071 23 14 7.9161 -6.4979 -2.6716 24 1 7.3283 -6.7978 -4.0019 25 1 6.9740 -6.9256 -1.6064 26 1 9.1991 -7.2303 -2.5210 27 6 6.6464 -1.5036 -1.4473 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2270 2.3513 0.0002 32 1 1.0506 5.0851 0.8858 33 1 5.1161 2.6559 0.0096 34 1 6.0455 1.0679 -0.0025 35 1 7.6904 -0.3248 1.6218 36 1 8.3214 0.0622 0.0032 37 1 8.1689 -2.7343 1.2178 38 1 9.6433 -1.7446 1.0914 39 1 9.4149 -3.4229 -0.7746 40 1 9.4798 -1.7385 -1.3542 41 1 9.5144 -3.1970 -2.9111 42 1 7.0552 -0.6981 -2.0575 43 1 5.6878 -1.8236 -1.8558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008567968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:30 Heat of formation + Delta-G solvation = -80.787772 kcal Electronic energy + Delta-G solvation = -27237.059792 eV Core-core repulsion = 23282.640456 eV Total energy + Delta-G solvation = -3954.419336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19766 -40.69654 -39.82742 -39.05266 -37.84074 -36.14443 -34.29699 -32.80971 -32.30129 -32.01477 -30.03304 -28.48900 -27.09501 -25.62077 -24.24743 -24.00103 -23.45065 -21.75341 -21.12257 -20.36360 -19.42864 -18.97375 -18.60768 -17.93659 -17.11673 -16.91629 -16.38783 -16.28799 -16.11348 -15.94516 -15.79112 -15.50342 -15.46503 -15.05148 -14.93236 -14.31924 -14.14231 -14.06498 -13.71082 -13.59848 -13.01455 -12.98014 -12.62553 -12.59591 -12.52686 -12.42301 -11.93677 -11.87811 -11.83352 -11.70008 -11.25315 -11.23086 -10.65337 -10.56768 -10.31147 -10.22203 -9.97795 -8.94310 -8.28178 -5.43287 -0.59183 0.04934 1.55418 1.63366 1.70258 1.82504 1.98720 2.03229 2.42620 2.63535 2.64502 3.18116 3.37598 3.47167 3.60045 3.62745 3.81523 4.03742 4.04208 4.12332 4.15362 4.27461 4.30109 4.35498 4.37483 4.43396 4.61058 4.67235 4.71353 4.74990 4.92793 5.02988 5.06876 5.14537 5.17339 5.27127 5.37820 5.53732 5.80845 6.05182 6.37639 6.47852 6.54228 6.72386 7.03141 7.23264 7.75157 8.16082 8.96133 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.003041 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.979335 B = 9206.409911 C =10151.838583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.305 6.305 3 C 0.225 3.775 4 C -0.280 4.280 5 C 0.373 3.627 6 O -0.483 6.483 7 N -0.545 5.545 8 C 0.210 3.790 9 C -0.254 4.254 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.704 5.704 13 C 0.145 3.855 14 H 0.056 0.944 15 C -0.105 4.105 16 C -0.125 4.125 17 C 0.149 3.851 18 N -0.615 5.615 19 C -0.360 4.360 20 H 0.035 0.965 21 C -0.069 4.069 22 N -0.936 5.936 23 Si 1.114 2.886 24 H -0.283 1.283 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.146 3.854 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.430 0.570 33 H 0.199 0.801 34 H 0.414 0.586 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.015 0.985 41 H 0.256 0.744 42 H 0.024 0.976 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.395 18.980 11.748 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.213 6.213 3 C 0.169 3.831 4 C -0.302 4.302 5 C 0.196 3.804 6 O -0.295 6.295 7 N -0.268 5.268 8 C 0.051 3.949 9 C -0.260 4.260 10 C 0.349 3.651 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.039 3.961 14 H 0.075 0.925 15 C -0.143 4.143 16 C -0.164 4.164 17 C 0.024 3.976 18 N -0.340 5.340 19 C -0.490 4.490 20 H 0.053 0.947 21 C -0.266 4.266 22 N -0.578 5.578 23 Si 0.938 3.062 24 H -0.210 1.210 25 H -0.208 1.208 26 H -0.207 1.207 27 C 0.019 3.981 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.196 0.804 32 H 0.293 0.707 33 H 0.216 0.784 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.707 17.300 10.762 25.128 hybrid contribution -1.295 0.936 0.338 1.633 sum -16.002 18.237 11.100 26.680 Atomic orbital electron populations 1.23593 0.75546 1.06103 1.03384 1.86392 1.24151 1.25522 1.85265 1.19442 0.91069 0.85612 0.87027 1.22255 1.03453 0.90314 1.14197 1.19161 0.86487 0.85711 0.89021 1.84662 1.70730 1.37758 1.36337 1.67308 1.07206 1.33120 1.19173 1.22991 1.00971 0.83710 0.87192 1.20494 0.91788 0.95559 1.18203 1.18107 0.82556 0.88388 0.76072 1.90846 1.73537 1.29441 1.50696 1.45738 1.04974 1.10121 1.74867 1.21306 0.91669 0.86445 0.96693 0.92539 1.21635 0.92572 0.98093 1.01958 1.21929 1.00495 0.97185 0.96804 1.20973 0.86359 0.98429 0.91826 1.44291 1.15301 1.09891 1.64551 1.20146 0.94089 0.97832 1.36897 0.94678 1.27151 0.94536 1.09458 0.95443 1.70870 1.27431 1.14243 1.45228 0.82889 0.75606 0.71015 0.76675 1.20983 1.20754 1.20674 1.21303 0.92324 0.89488 0.94943 0.89819 0.90608 0.86890 0.80356 0.70669 0.78420 0.74776 0.88848 0.90016 0.93340 0.89070 0.93594 0.96733 0.93377 0.95825 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.30 -8.16 8.71 -67.96 -0.59 -8.75 16 3 C 0.22 5.40 6.74 23.06 0.16 5.55 16 4 C -0.28 -4.71 9.02 22.52 0.20 -4.51 16 5 C 0.37 6.46 7.73 84.69 0.65 7.11 16 6 O -0.48 -6.01 13.54 -88.29 -1.20 -7.20 16 7 N -0.55 -10.83 10.37 -307.94 -3.19 -14.02 16 8 C 0.21 4.00 10.71 85.04 0.91 4.91 16 9 C -0.25 -6.42 5.90 -19.92 -0.12 -6.53 16 10 C 0.56 18.29 7.73 86.64 0.67 18.96 16 11 O -0.57 -24.46 14.94 16.31 0.24 -24.21 16 12 N -0.70 -19.58 5.03 -444.83 -2.24 -21.82 16 13 C 0.15 5.18 2.62 45.21 0.12 5.30 16 14 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 15 C -0.10 -2.98 5.35 30.62 0.16 -2.82 16 16 C -0.12 -4.35 6.08 30.68 0.19 -4.17 16 17 C 0.15 7.01 4.69 86.36 0.41 7.42 16 18 N -0.62 -32.64 2.85 -698.23 -1.99 -34.62 16 19 C -0.36 -21.70 9.49 84.03 0.80 -20.90 16 20 H 0.04 2.22 7.95 -2.91 -0.02 2.20 16 21 C -0.07 -4.10 4.68 84.86 0.40 -3.70 16 22 N -0.94 -57.99 12.40 21.65 0.27 -57.72 16 23 Si 1.11 53.40 29.99 68.60 2.06 55.46 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 27 C 0.15 6.68 6.12 86.51 0.53 7.21 16 28 H 0.08 0.77 7.71 -2.39 -0.02 0.75 16 29 H 0.08 0.84 7.71 -2.39 -0.02 0.82 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.18 1.85 6.45 -2.91 -0.02 1.83 16 32 H 0.43 0.58 9.06 -74.06 -0.67 -0.09 16 33 H 0.20 2.37 6.41 -2.91 -0.02 2.35 16 34 H 0.41 7.70 6.65 -92.71 -0.62 7.08 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 2.46 6.29 -2.39 -0.02 2.45 16 40 H 0.01 0.69 7.87 -2.38 -0.02 0.67 16 41 H 0.26 16.05 6.72 -92.71 -0.62 15.43 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.02 1.22 7.93 -2.39 -0.02 1.20 16 Total: -1.00 -86.26 353.02 -0.52 -86.78 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -0.07 Total: 11.05 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.19 Total: 15.05 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -7.15 Total: -128.18 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.54 Total: -40.16 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.06 Total: 55.46 kcal Total: -86.26 -0.52 -86.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008567968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.993 kcal (2) G-P(sol) polarization free energy of solvation -86.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds