Wall clock time and date at job start Tue Mar 31 2020 13:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35684 * 116.99661 * 2 1 4 4 C 1.38738 * 119.57739 * 179.97438 * 3 2 1 5 5 C 1.39728 * 119.07530 * 179.97438 * 4 3 2 6 6 C 1.48172 * 120.86325 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99853 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00124 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00035 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.88881 * 328.88601 * 9 8 6 11 11 C 1.55152 * 111.00591 * 205.00330 * 9 8 6 12 12 C 1.54318 * 102.94511 * 206.38867 * 11 9 8 13 13 N 1.47022 * 107.27253 * 22.18990 * 12 11 9 14 14 C 1.36933 * 125.65341 * 181.02674 * 13 12 11 15 15 H 1.08006 * 120.00444 * 153.90406 * 14 13 12 16 16 C 1.38817 * 119.99751 * 333.90252 * 14 13 12 17 17 N 1.31616 * 120.00100 * 145.63931 * 16 14 13 18 18 Si 1.86797 * 119.99742 * 325.63468 * 16 14 13 19 19 H 1.48495 * 109.47312 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46991 * 120.00404 * 18 16 14 21 21 H 1.48502 * 109.47132 * 239.99993 * 18 16 14 22 22 C 1.47424 * 108.69946 * 1.29134 * 13 12 11 23 23 C 1.39724 * 118.27705 * 0.27075 * 5 4 3 24 24 C 1.38745 * 119.07380 * 359.46147 * 23 5 4 25 25 O 1.35685 * 119.58508 * 180.29175 * 24 23 5 26 26 C 1.42896 * 117.00325 * 180.25824 * 25 24 23 27 27 N 1.32253 * 119.58499 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47503 * 299.99359 * 1 2 3 29 29 H 1.09000 * 109.47586 * 59.99550 * 1 2 3 30 30 H 1.09003 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.46454 * 0.02562 * 4 3 2 32 32 H 0.96998 * 119.99690 * 0.02562 * 8 6 5 33 33 H 1.09001 * 110.72609 * 88.02153 * 11 9 8 34 34 H 1.09005 * 110.72274 * 324.75012 * 11 9 8 35 35 H 1.09006 * 109.88476 * 262.77823 * 12 11 9 36 36 H 1.08998 * 109.88900 * 141.61115 * 12 11 9 37 37 H 0.97006 * 120.00091 * 5.05677 * 17 16 14 38 38 H 1.09000 * 110.36988 * 94.48149 * 22 13 12 39 39 H 1.09005 * 110.36594 * 216.80532 * 22 13 12 40 40 H 1.07994 * 120.46715 * 179.72853 * 23 5 4 41 41 H 1.08998 * 109.46874 * 300.00299 * 26 25 24 42 42 H 1.08998 * 109.47521 * 60.00176 * 26 25 24 43 43 H 1.09002 * 109.47150 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2715 0.0005 5 6 4.0543 2.5220 0.0000 6 6 5.5317 2.6349 0.0000 7 8 6.2176 1.6318 0.0009 8 7 6.1147 3.8500 -0.0011 9 6 7.5754 3.9616 -0.0006 10 1 8.0291 3.1224 0.5268 11 6 8.0297 5.3134 0.6104 12 6 9.3972 5.5549 -0.0628 13 7 9.4180 4.7670 -1.3039 14 6 10.4643 4.6914 -2.1839 15 1 10.5820 3.8189 -2.8095 16 6 11.3740 5.7364 -2.2720 17 7 12.6414 5.4861 -2.5234 18 14 10.7990 7.4976 -2.0339 19 1 9.3387 7.5096 -1.7646 20 1 11.5189 8.1022 -0.8843 21 1 11.0826 8.2814 -3.2630 22 6 8.1232 4.0769 -1.4473 23 6 3.2483 3.6633 0.0047 24 6 1.8688 3.5146 -0.0016 25 8 1.0763 4.6160 -0.0031 26 6 -0.3361 4.3990 -0.0040 27 7 1.3166 2.3129 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0198 0.3662 0.0005 32 1 5.5671 4.6506 -0.0015 33 1 8.1414 5.2301 1.6914 34 1 7.3283 6.1076 0.3543 35 1 10.1991 5.2261 0.5983 36 1 9.5151 6.6136 -0.2937 37 1 12.9273 4.5802 -2.7196 38 1 7.4459 4.6656 -2.0661 39 1 8.2671 3.0859 -1.8781 40 1 3.6928 4.6476 0.0089 41 1 -0.6164 3.8352 -0.8937 42 1 -0.6179 3.8367 0.8862 43 1 -0.8512 5.3596 -0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015109932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:45 Heat of formation + Delta-G solvation = -32.828522 kcal Electronic energy + Delta-G solvation = -26607.848989 eV Core-core repulsion = 22655.509322 eV Total energy + Delta-G solvation = -3952.339667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41569 -39.80048 -39.29170 -37.71652 -37.07559 -34.32324 -32.95116 -32.07519 -30.86967 -29.44862 -28.40527 -27.72264 -26.93923 -24.79540 -23.75016 -23.42727 -21.07787 -20.78460 -20.13176 -19.22172 -18.31056 -17.51217 -16.94652 -16.79233 -16.70458 -15.99498 -15.92826 -15.86110 -15.26342 -15.08274 -14.69329 -14.51087 -14.06465 -13.74339 -13.51310 -13.28251 -12.81038 -12.69204 -12.53260 -12.49142 -12.16041 -12.01814 -12.01063 -11.41370 -11.09154 -10.99850 -10.90916 -10.69379 -10.53340 -10.40228 -10.18832 -10.02829 -9.59291 -9.28217 -8.99175 -8.58951 -8.24212 -7.07117 -6.30612 -3.24937 0.37124 0.80783 2.43663 2.66884 2.70258 3.07172 3.45186 3.49109 3.52962 3.66735 3.81128 4.42914 4.57489 4.59962 4.70002 4.82462 4.84655 4.86870 4.89892 4.90289 4.97528 5.14644 5.17790 5.20289 5.27602 5.41904 5.43850 5.57673 5.67699 5.82136 5.89827 5.96886 6.12957 6.34467 6.40851 6.54984 6.65691 6.79143 6.81804 6.92939 7.27030 7.44722 7.91006 8.10105 8.38969 9.02952 9.61297 10.34190 11.06796 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002637 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.071326 B =10615.325109 C =11405.057118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.300 6.300 3 C 0.359 3.641 4 C -0.170 4.170 5 C -0.014 4.014 6 C 0.559 3.441 7 O -0.519 6.519 8 N -0.705 5.705 9 C 0.127 3.873 10 H 0.103 0.897 11 C -0.136 4.136 12 C 0.125 3.875 13 N -0.600 5.600 14 C -0.342 4.342 15 H 0.067 0.933 16 C -0.006 4.006 17 N -0.902 5.902 18 Si 1.050 2.950 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.298 1.298 22 C 0.121 3.879 23 C -0.198 4.198 24 C 0.359 3.641 25 O -0.301 6.301 26 C 0.040 3.960 27 N -0.584 5.584 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.400 0.600 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.023 0.977 39 H 0.048 0.952 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.985 -4.058 8.269 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.181 3.819 4 C -0.191 4.191 5 C -0.024 4.024 6 C 0.344 3.656 7 O -0.395 6.395 8 N -0.356 5.356 9 C 0.022 3.978 10 H 0.121 0.879 11 C -0.175 4.175 12 C -0.001 4.001 13 N -0.328 5.328 14 C -0.469 4.469 15 H 0.085 0.915 16 C -0.210 4.210 17 N -0.540 5.540 18 Si 0.881 3.119 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.226 1.226 22 C -0.006 4.006 23 C -0.219 4.219 24 C 0.181 3.819 25 O -0.208 6.208 26 C -0.055 4.055 27 N -0.324 5.324 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.176 0.824 32 H 0.236 0.764 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.167 0.833 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -28.580 -3.297 8.287 29.939 hybrid contribution -0.627 -1.016 -0.228 1.215 sum -29.207 -4.313 8.059 30.604 Atomic orbital electron populations 1.22896 0.76987 1.03273 1.02382 1.86306 1.23062 1.23821 1.87436 1.19162 0.88664 0.83433 0.90681 1.20967 0.91457 0.99328 1.07370 1.19943 0.93855 0.92370 0.96216 1.17918 0.86219 0.84094 0.77378 1.90824 1.64002 1.36044 1.48587 1.45875 1.08319 1.07540 1.73861 1.22407 0.77387 0.98966 0.98992 0.87854 1.22868 0.98679 0.95924 1.00007 1.21605 0.93802 0.96109 0.88541 1.44599 1.11431 1.55854 1.20938 1.19790 1.03526 1.02604 1.21021 0.91495 1.26077 0.93394 1.03178 0.98323 1.70911 1.13148 1.24309 1.45607 0.84017 0.75333 0.76403 0.76111 1.20631 1.21902 1.22552 1.22010 0.88805 0.97122 0.92677 1.21025 0.90536 1.00107 1.10254 1.19130 0.88318 0.83802 0.90681 1.86291 1.19554 1.27404 1.87523 1.22889 0.77214 1.03015 1.02396 1.66628 1.41941 0.98586 1.25204 0.92268 0.92240 0.88311 0.82352 0.76443 0.90717 0.91175 0.94208 0.94901 0.92301 0.95925 0.93379 0.83260 0.92250 0.92276 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.30 -3.03 10.47 -18.75 -0.20 -3.22 16 3 C 0.36 4.01 7.48 -17.19 -0.13 3.88 16 4 C -0.17 -2.03 9.60 -38.84 -0.37 -2.40 16 5 C -0.01 -0.16 5.90 -104.71 -0.62 -0.78 16 6 C 0.56 8.09 7.80 -12.18 -0.09 8.00 16 7 O -0.52 -9.44 16.08 5.35 0.09 -9.35 16 8 N -0.70 -9.42 5.15 -52.45 -0.27 -9.69 16 9 C 0.13 2.13 3.44 -65.66 -0.23 1.90 16 10 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 11 C -0.14 -2.14 6.59 -24.90 -0.16 -2.30 16 12 C 0.12 2.65 6.04 -3.07 -0.02 2.63 16 13 N -0.60 -14.89 3.05 -169.93 -0.52 -15.41 16 14 C -0.34 -9.90 10.24 -15.06 -0.15 -10.06 16 15 H 0.07 2.08 8.06 -52.48 -0.42 1.65 16 16 C -0.01 -0.17 5.29 -17.43 -0.09 -0.27 16 17 N -0.90 -28.01 13.70 55.49 0.76 -27.25 16 18 Si 1.05 26.04 26.22 -169.99 -4.46 21.58 16 19 H -0.28 -6.46 6.18 56.52 0.35 -6.12 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 C 0.12 2.53 6.94 -2.41 -0.02 2.51 16 23 C -0.20 -2.03 9.54 -38.84 -0.37 -2.40 16 24 C 0.36 3.76 7.48 -17.18 -0.13 3.63 16 25 O -0.30 -2.81 10.47 -18.76 -0.20 -3.01 16 26 C 0.04 0.25 10.38 101.05 1.05 1.30 16 27 N -0.58 -6.18 8.02 -13.45 -0.11 -6.29 16 28 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.16 1.91 7.74 -52.49 -0.41 1.51 16 32 H 0.40 4.12 6.70 -40.82 -0.27 3.84 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.73 3.85 -51.93 -0.20 0.53 16 37 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.15 1.21 6.53 -52.49 -0.34 0.86 16 41 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -34.61 359.08 -5.65 -40.26 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.88 Total: 0.00 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.29 Total: 6.95 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.14 Total: -58.63 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.31 Total: -15.58 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -4.46 Total: 21.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.61 -5.65 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015109932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.434 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds