Wall clock time and date at job start Tue Mar 31 2020 13:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35684 * 116.99661 * 2 1 4 4 C 1.38738 * 119.57739 * 179.97438 * 3 2 1 5 5 C 1.39728 * 119.07530 * 179.97438 * 4 3 2 6 6 C 1.48172 * 120.86325 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99853 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00124 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00035 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.88881 * 328.88601 * 9 8 6 11 11 C 1.55152 * 111.00591 * 205.00330 * 9 8 6 12 12 C 1.54318 * 102.94511 * 206.38867 * 11 9 8 13 13 N 1.47022 * 107.27253 * 22.18990 * 12 11 9 14 14 C 1.36933 * 125.65341 * 181.02674 * 13 12 11 15 15 H 1.08006 * 120.00444 * 153.90406 * 14 13 12 16 16 C 1.38817 * 119.99751 * 333.90252 * 14 13 12 17 17 N 1.31616 * 120.00100 * 145.63931 * 16 14 13 18 18 Si 1.86797 * 119.99742 * 325.63468 * 16 14 13 19 19 H 1.48495 * 109.47312 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46991 * 120.00404 * 18 16 14 21 21 H 1.48502 * 109.47132 * 239.99993 * 18 16 14 22 22 C 1.47424 * 108.69946 * 1.29134 * 13 12 11 23 23 C 1.39724 * 118.27705 * 0.27075 * 5 4 3 24 24 C 1.38745 * 119.07380 * 359.46147 * 23 5 4 25 25 O 1.35685 * 119.58508 * 180.29175 * 24 23 5 26 26 C 1.42896 * 117.00325 * 180.25824 * 25 24 23 27 27 N 1.32253 * 119.58499 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47503 * 299.99359 * 1 2 3 29 29 H 1.09000 * 109.47586 * 59.99550 * 1 2 3 30 30 H 1.09003 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.46454 * 0.02562 * 4 3 2 32 32 H 0.96998 * 119.99690 * 0.02562 * 8 6 5 33 33 H 1.09001 * 110.72609 * 88.02153 * 11 9 8 34 34 H 1.09005 * 110.72274 * 324.75012 * 11 9 8 35 35 H 1.09006 * 109.88476 * 262.77823 * 12 11 9 36 36 H 1.08998 * 109.88900 * 141.61115 * 12 11 9 37 37 H 0.97006 * 120.00091 * 5.05677 * 17 16 14 38 38 H 1.09000 * 110.36988 * 94.48149 * 22 13 12 39 39 H 1.09005 * 110.36594 * 216.80532 * 22 13 12 40 40 H 1.07994 * 120.46715 * 179.72853 * 23 5 4 41 41 H 1.08998 * 109.46874 * 300.00299 * 26 25 24 42 42 H 1.08998 * 109.47521 * 60.00176 * 26 25 24 43 43 H 1.09002 * 109.47150 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2715 0.0005 5 6 4.0543 2.5220 0.0000 6 6 5.5317 2.6349 0.0000 7 8 6.2176 1.6318 0.0009 8 7 6.1147 3.8500 -0.0011 9 6 7.5754 3.9616 -0.0006 10 1 8.0291 3.1224 0.5268 11 6 8.0297 5.3134 0.6104 12 6 9.3972 5.5549 -0.0628 13 7 9.4180 4.7670 -1.3039 14 6 10.4643 4.6914 -2.1839 15 1 10.5820 3.8189 -2.8095 16 6 11.3740 5.7364 -2.2720 17 7 12.6414 5.4861 -2.5234 18 14 10.7990 7.4976 -2.0339 19 1 9.3387 7.5096 -1.7646 20 1 11.5189 8.1022 -0.8843 21 1 11.0826 8.2814 -3.2630 22 6 8.1232 4.0769 -1.4473 23 6 3.2483 3.6633 0.0047 24 6 1.8688 3.5146 -0.0016 25 8 1.0763 4.6160 -0.0031 26 6 -0.3361 4.3990 -0.0040 27 7 1.3166 2.3129 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0198 0.3662 0.0005 32 1 5.5671 4.6506 -0.0015 33 1 8.1414 5.2301 1.6914 34 1 7.3283 6.1076 0.3543 35 1 10.1991 5.2261 0.5983 36 1 9.5151 6.6136 -0.2937 37 1 12.9273 4.5802 -2.7196 38 1 7.4459 4.6656 -2.0661 39 1 8.2671 3.0859 -1.8781 40 1 3.6928 4.6476 0.0089 41 1 -0.6164 3.8352 -0.8937 42 1 -0.6179 3.8367 0.8862 43 1 -0.8512 5.3596 -0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015109932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:44 Heat of formation + Delta-G solvation = -61.547625 kcal Electronic energy + Delta-G solvation = -26609.094343 eV Core-core repulsion = 22655.509322 eV Total energy + Delta-G solvation = -3953.585020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25046 -40.97022 -39.98674 -39.16369 -37.97519 -35.83002 -34.38250 -33.55634 -31.68117 -31.10636 -29.48574 -28.80656 -27.53094 -26.24860 -24.99393 -24.43356 -22.39451 -22.18499 -21.68975 -20.21399 -19.52347 -19.05454 -17.95985 -17.78975 -17.50488 -16.98549 -16.94061 -16.59969 -16.55682 -16.11929 -16.05851 -15.80022 -15.41385 -15.03290 -14.75831 -14.33931 -14.33791 -14.09989 -13.87239 -13.48643 -13.22825 -12.98405 -12.73441 -12.59680 -12.58632 -12.47712 -12.35431 -12.00565 -11.76143 -11.64517 -11.53654 -11.15137 -11.07833 -11.03453 -10.50830 -10.21696 -9.37130 -9.19340 -8.57812 -5.51056 -0.53815 -0.00736 1.45884 1.55154 1.59990 1.65811 1.75579 1.97157 2.08370 2.54056 2.59039 2.95682 3.05012 3.43312 3.54517 3.69638 3.76001 3.89610 3.90441 4.10057 4.14145 4.35844 4.39859 4.40439 4.42261 4.44385 4.53479 4.60654 4.71278 4.76771 4.81980 4.88687 4.91332 4.94144 4.96759 5.02271 5.22852 5.40089 5.71468 5.72635 6.14169 6.20822 6.35754 6.47967 6.81968 7.00575 7.48093 8.18629 8.74490 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002637 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.071326 B =10615.325109 C =11405.057118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.356 3.644 4 C -0.184 4.184 5 C -0.019 4.019 6 C 0.562 3.438 7 O -0.563 6.563 8 N -0.688 5.688 9 C 0.144 3.856 10 H 0.085 0.915 11 C -0.116 4.116 12 C 0.112 3.888 13 N -0.621 5.621 14 C -0.343 4.343 15 H 0.022 0.978 16 C -0.060 4.060 17 N -0.934 5.934 18 Si 1.100 2.900 19 H -0.248 1.248 20 H -0.279 1.279 21 H -0.297 1.297 22 C 0.118 3.882 23 C -0.187 4.187 24 C 0.355 3.645 25 O -0.305 6.305 26 C 0.034 3.966 27 N -0.579 5.579 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.420 0.580 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.250 0.750 38 H 0.037 0.963 39 H 0.017 0.983 40 H 0.176 0.824 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.630 -1.558 9.881 34.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.178 3.822 4 C -0.206 4.206 5 C -0.029 4.029 6 C 0.349 3.651 7 O -0.442 6.442 8 N -0.340 5.340 9 C 0.038 3.962 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.013 4.013 13 N -0.349 5.349 14 C -0.471 4.471 15 H 0.040 0.960 16 C -0.257 4.257 17 N -0.574 5.574 18 Si 0.924 3.076 19 H -0.172 1.172 20 H -0.206 1.206 21 H -0.225 1.225 22 C -0.008 4.008 23 C -0.209 4.209 24 C 0.176 3.824 25 O -0.211 6.211 26 C -0.061 4.061 27 N -0.320 5.320 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.259 0.741 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.193 0.807 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -32.300 -0.792 9.920 33.798 hybrid contribution 0.399 -1.940 -0.774 2.126 sum -31.901 -2.732 9.146 33.298 Atomic orbital electron populations 1.23160 0.75106 1.05069 1.02661 1.86300 1.24977 1.23418 1.87215 1.19146 0.88452 0.84000 0.90619 1.20957 0.92086 0.99182 1.08396 1.19631 0.92253 0.93176 0.97861 1.18252 0.87142 0.83607 0.76115 1.90812 1.65233 1.37596 1.50563 1.45589 1.06932 1.08204 1.73249 1.21953 0.79107 0.99500 0.95682 0.89689 1.22837 0.95710 0.95572 1.01312 1.21838 0.97004 0.95404 0.87026 1.44638 1.11919 1.56715 1.21643 1.19601 1.05199 1.01119 1.21203 0.95996 1.27450 0.92688 1.07410 0.98121 1.71049 1.14620 1.23244 1.48505 0.83407 0.76794 0.70922 0.76489 1.17209 1.20565 1.22484 1.22087 0.87709 0.95170 0.95856 1.21198 0.90445 1.00420 1.08797 1.19314 0.88748 0.84071 0.90218 1.86295 1.20925 1.26745 1.87148 1.23150 0.75691 1.04729 1.02499 1.66677 1.41779 0.98571 1.24928 0.91830 0.92023 0.85874 0.83460 0.74057 0.87340 0.87650 0.95621 0.94587 0.94082 0.94549 0.96495 0.80676 0.92268 0.92042 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.38 113.37 1.18 1.56 16 2 O -0.31 -6.03 10.47 -90.02 -0.94 -6.97 16 3 C 0.36 7.61 7.48 84.75 0.63 8.24 16 4 C -0.18 -4.37 9.60 22.75 0.22 -4.15 16 5 C -0.02 -0.43 5.90 -19.92 -0.12 -0.55 16 6 C 0.56 15.68 7.80 86.88 0.68 16.35 16 7 O -0.56 -20.84 16.08 -3.76 -0.06 -20.90 16 8 N -0.69 -16.46 5.15 -438.16 -2.26 -18.72 16 9 C 0.14 4.53 3.44 46.46 0.16 4.69 16 10 H 0.08 3.06 7.54 -2.39 -0.02 3.04 16 11 C -0.12 -3.14 6.59 31.78 0.21 -2.93 16 12 C 0.11 4.50 6.04 86.73 0.52 5.02 16 13 N -0.62 -30.80 3.05 -691.54 -2.11 -32.91 16 14 C -0.34 -20.55 10.24 84.04 0.86 -19.69 16 15 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 16 C -0.06 -3.56 5.29 84.86 0.45 -3.11 16 17 N -0.93 -60.07 13.70 21.65 0.30 -59.77 16 18 Si 1.10 51.75 26.22 68.60 1.80 53.55 16 19 H -0.25 -10.25 6.18 99.48 0.61 -9.63 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 C 0.12 4.91 6.94 86.93 0.60 5.51 16 23 C -0.19 -3.29 9.54 22.75 0.22 -3.07 16 24 C 0.35 6.49 7.48 84.75 0.63 7.13 16 25 O -0.30 -4.69 10.47 -90.03 -0.94 -5.63 16 26 C 0.03 0.31 10.38 113.37 1.18 1.49 16 27 N -0.58 -11.15 8.02 -422.18 -3.39 -14.53 16 28 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.15 3.73 7.74 -2.91 -0.02 3.71 16 32 H 0.42 6.71 6.70 -92.71 -0.62 6.09 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 2.19 8.01 -2.38 -0.02 2.17 16 35 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.04 1.45 3.85 -2.39 -0.01 1.45 16 37 H 0.25 16.32 8.73 -92.70 -0.81 15.51 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.18 2.03 6.53 -2.91 -0.02 2.01 16 41 H 0.06 0.57 8.10 -2.39 -0.02 0.55 16 42 H 0.06 0.56 8.10 -2.39 -0.02 0.54 16 43 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -79.58 359.08 0.11 -79.47 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.29 Total: 9.93 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.42 Total: 16.50 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -7.46 Total: -125.94 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.95 Total: -33.51 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 1.80 Total: 53.55 kcal Total: -79.58 0.11 -79.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015109932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.922 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds