Wall clock time and date at job start Tue Mar 31 2020 13:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99683 * 2 1 4 4 N 1.34769 * 120.00461 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00237 * 180.02562 * 4 2 1 6 6 C 1.50706 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.35129 * 125.61227 * 89.72328 * 6 5 4 8 8 C 1.40369 * 107.11326 * 179.84609 * 7 6 5 9 9 C 1.36548 * 106.70345 * 0.40521 * 8 7 6 10 10 C 1.46659 * 125.98536 * 179.78444 * 9 8 7 11 11 O 1.21692 * 119.99870 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00041 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00099 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88639 * 31.12124 * 13 12 10 15 15 C 1.55158 * 111.00409 * 154.99883 * 13 12 10 16 16 C 1.54328 * 102.94209 * 153.57482 * 15 13 12 17 17 N 1.47023 * 107.27271 * 337.81122 * 16 15 13 18 18 C 1.36927 * 125.64790 * 178.96006 * 17 16 15 19 19 H 1.07999 * 120.00056 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00591 * 359.97204 * 18 17 16 21 21 N 1.31621 * 119.99320 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00607 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46933 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47125 * 120.00091 * 22 20 18 25 25 H 1.48492 * 109.47205 * 240.00251 * 22 20 18 26 26 C 1.47427 * 108.69970 * 358.93606 * 17 16 15 27 27 O 1.33930 * 125.61615 * 270.02048 * 6 5 4 28 28 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47433 * 299.99963 * 1 2 3 30 30 H 1.08996 * 109.47578 * 60.00666 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.46609 * 60.00363 * 5 4 2 33 33 H 1.09000 * 109.47175 * 300.00158 * 5 4 2 34 34 H 1.08001 * 126.44628 * 359.97438 * 7 6 5 35 35 H 1.07996 * 126.65198 * 180.14943 * 8 7 6 36 36 H 0.97003 * 119.99512 * 0.02562 * 12 10 9 37 37 H 1.08994 * 110.72185 * 271.94018 * 15 13 12 38 38 H 1.08998 * 110.72108 * 35.03878 * 15 13 12 39 39 H 1.09003 * 109.87684 * 97.22358 * 16 15 13 40 40 H 1.08998 * 109.88721 * 218.38946 * 16 15 13 41 41 H 0.96999 * 119.99975 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.37091 * 265.28880 * 26 17 16 43 43 H 1.09003 * 110.36248 * 142.96737 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1483 -2.5879 0.0010 7 6 4.4060 -3.3313 -1.0977 8 6 4.8550 -4.5845 -0.6524 9 6 4.8397 -4.5447 0.7124 10 6 5.2261 -5.6376 1.6108 11 8 5.6022 -6.6994 1.1505 12 7 5.1646 -5.4659 2.9462 13 6 5.5500 -6.5578 3.8436 14 1 6.3269 -7.1754 3.3928 15 6 6.0049 -6.0103 5.2222 16 6 5.7044 -7.1851 6.1769 17 7 4.6835 -8.0226 5.5306 18 6 4.1572 -9.1779 6.0437 19 1 3.4079 -9.7230 5.4889 20 6 4.5867 -9.6486 7.2770 21 7 5.4996 -8.9840 7.9533 22 14 3.8683 -11.2242 7.9773 23 1 2.8662 -11.7752 7.0299 24 1 4.9548 -12.2157 8.1815 25 1 3.2122 -10.9340 9.2774 26 6 4.3198 -7.4122 4.2388 27 8 4.4075 -3.3236 1.0897 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 4.0088 -0.6530 0.8912 33 1 4.0096 -0.6533 -0.8889 34 1 4.2905 -3.0191 -2.1251 35 1 5.1509 -5.4198 -1.2696 36 1 4.8644 -4.6196 3.3130 37 1 7.0709 -5.7829 5.2142 38 1 5.4260 -5.1287 5.4972 39 1 6.6103 -7.7677 6.3442 40 1 5.3256 -6.8044 7.1254 41 1 5.7995 -9.3126 8.8153 42 1 3.4394 -6.7798 4.3525 43 1 4.1389 -8.1851 3.4917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015864090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:16 Heat of formation + Delta-G solvation = -28.702611 kcal Electronic energy + Delta-G solvation = -26035.252619 eV Core-core repulsion = 22083.091865 eV Total energy + Delta-G solvation = -3952.160754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.08717 -39.98935 -39.55429 -37.29952 -35.55078 -34.26037 -33.37353 -32.05716 -31.57897 -29.88642 -29.16772 -27.49882 -26.25907 -24.51392 -22.66828 -21.95642 -21.16738 -20.57892 -20.44403 -19.99413 -18.54003 -17.51765 -17.12405 -16.91348 -16.29204 -16.09694 -15.97391 -15.19106 -14.72605 -14.59189 -14.34274 -14.11993 -14.05707 -13.78555 -13.51570 -13.31327 -13.09384 -12.88592 -12.69959 -12.47573 -12.33626 -12.29089 -11.85964 -11.09705 -10.95666 -10.81006 -10.55838 -10.53106 -10.34388 -10.14743 -10.04403 -9.96420 -9.74341 -9.69003 -9.09347 -8.80345 -8.62831 -6.87629 -5.74158 -3.08000 0.68334 1.86307 2.15594 2.21065 2.89519 3.09381 3.15902 3.39467 3.45187 3.47608 4.02422 4.37054 4.47965 4.54353 4.59191 4.72143 4.84540 4.96809 5.01482 5.19663 5.29928 5.36775 5.39608 5.42270 5.51235 5.57963 5.67961 5.73244 5.76917 5.98597 6.08807 6.23777 6.37002 6.46137 6.49338 6.62580 6.87829 6.93803 7.47780 7.53837 7.54537 7.69256 7.78612 8.08720 8.22104 9.18828 9.78550 10.43029 11.37846 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.002288 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.655029 B =12232.551649 C =12937.034735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.546 6.546 4 N -0.730 5.730 5 C 0.200 3.800 6 C -0.017 4.017 7 C -0.189 4.189 8 C -0.129 4.129 9 C -0.052 4.052 10 C 0.597 3.403 11 O -0.515 6.515 12 N -0.702 5.702 13 C 0.124 3.876 14 H 0.101 0.899 15 C -0.149 4.149 16 C 0.179 3.821 17 N -0.603 5.603 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.129 3.871 27 O -0.155 6.155 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.407 0.593 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.020 0.980 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 17.268 -17.970 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.423 6.423 4 N -0.384 5.384 5 C 0.077 3.923 6 C -0.069 4.069 7 C -0.209 4.209 8 C -0.149 4.149 9 C -0.106 4.106 10 C 0.382 3.618 11 O -0.393 6.393 12 N -0.351 5.351 13 C 0.020 3.980 14 H 0.119 0.881 15 C -0.188 4.188 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.002 3.998 27 O -0.051 6.051 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.242 0.758 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.237 0.763 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.114 17.211 -17.751 25.248 hybrid contribution -0.662 -0.902 0.440 1.202 sum -5.776 16.308 -17.311 24.474 Atomic orbital electron populations 1.21856 0.91045 1.04548 1.05580 1.20880 0.90796 0.83028 0.75146 1.90753 1.70741 1.31307 1.49525 1.46241 1.06438 1.09541 1.76179 1.19639 0.80495 0.87304 1.04895 1.22497 1.05161 0.94701 0.84534 1.21677 1.05550 0.93907 0.99753 1.21995 1.01006 0.98939 0.92995 1.22407 1.08257 0.84959 0.94928 1.16574 0.78497 0.84899 0.81879 1.90914 1.47380 1.24976 1.75996 1.45967 1.66227 1.17761 1.05144 1.22454 0.98828 0.87683 0.89055 0.88095 1.23202 1.00560 1.00355 0.94717 1.21163 0.93129 0.87719 0.92600 1.44395 1.46175 1.25785 1.16683 1.19114 1.17594 0.97972 1.00825 0.90280 1.24817 0.99135 0.99248 0.97301 1.69954 1.32917 1.39536 1.14664 0.86009 0.78155 0.82655 0.78742 1.20470 1.21691 1.21749 1.21821 0.93748 0.94884 0.89371 1.84036 1.64345 1.22031 1.34678 0.90356 0.88419 0.88508 0.75835 0.89228 0.87878 0.82367 0.81849 0.76265 0.91425 0.91930 0.93093 0.93447 0.93736 0.96187 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.39 36.01 0.37 -0.30 16 2 C 0.51 3.88 7.94 -10.99 -0.09 3.79 16 3 O -0.55 -6.53 17.10 5.56 0.09 -6.43 16 4 N -0.73 -4.45 5.55 -61.47 -0.34 -4.79 16 5 C 0.20 1.36 6.20 -5.19 -0.03 1.33 16 6 C -0.02 -0.14 6.68 -35.41 -0.24 -0.37 16 7 C -0.19 -1.49 10.77 -39.89 -0.43 -1.92 16 8 C -0.13 -1.33 10.62 -39.39 -0.42 -1.75 16 9 C -0.05 -0.64 7.13 -36.79 -0.26 -0.90 16 10 C 0.60 8.97 7.79 -12.86 -0.10 8.87 16 11 O -0.52 -9.47 16.50 5.20 0.09 -9.39 16 12 N -0.70 -10.15 5.19 -53.04 -0.28 -10.43 16 13 C 0.12 2.22 3.42 -65.78 -0.23 1.99 16 14 H 0.10 1.96 7.54 -51.93 -0.39 1.57 16 15 C -0.15 -2.64 6.60 -24.89 -0.16 -2.81 16 16 C 0.18 4.24 5.37 -3.06 -0.02 4.23 16 17 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 18 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.94 10.31 55.49 0.57 -26.36 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.13 2.74 6.93 -2.53 -0.02 2.72 16 27 O -0.16 -1.63 10.40 5.01 0.05 -1.58 16 28 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 29 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.41 1.77 8.30 -40.82 -0.34 1.43 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.40 4.88 8.32 -40.82 -0.34 4.54 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 39 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 40 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -34.81 369.14 -7.74 -42.55 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.02 Total: 1.75 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.87 Total: 8.03 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.62 Total: -57.60 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.23 Total: -17.40 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.81 -7.74 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015864090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds