Wall clock time and date at job start Tue Mar 31 2020 13:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99683 * 2 1 4 4 N 1.34769 * 120.00461 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00237 * 180.02562 * 4 2 1 6 6 C 1.50706 * 109.46949 * 180.02562 * 5 4 2 7 7 C 1.35129 * 125.61227 * 89.72328 * 6 5 4 8 8 C 1.40369 * 107.11326 * 179.84609 * 7 6 5 9 9 C 1.36548 * 106.70345 * 0.40521 * 8 7 6 10 10 C 1.46659 * 125.98536 * 179.78444 * 9 8 7 11 11 O 1.21692 * 119.99870 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00041 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00099 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88639 * 31.12124 * 13 12 10 15 15 C 1.55158 * 111.00409 * 154.99883 * 13 12 10 16 16 C 1.54328 * 102.94209 * 153.57482 * 15 13 12 17 17 N 1.47023 * 107.27271 * 337.81122 * 16 15 13 18 18 C 1.36927 * 125.64790 * 178.96006 * 17 16 15 19 19 H 1.07999 * 120.00056 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00591 * 359.97204 * 18 17 16 21 21 N 1.31621 * 119.99320 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00607 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46933 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47125 * 120.00091 * 22 20 18 25 25 H 1.48492 * 109.47205 * 240.00251 * 22 20 18 26 26 C 1.47427 * 108.69970 * 358.93606 * 17 16 15 27 27 O 1.33930 * 125.61615 * 270.02048 * 6 5 4 28 28 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47433 * 299.99963 * 1 2 3 30 30 H 1.08996 * 109.47578 * 60.00666 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.46609 * 60.00363 * 5 4 2 33 33 H 1.09000 * 109.47175 * 300.00158 * 5 4 2 34 34 H 1.08001 * 126.44628 * 359.97438 * 7 6 5 35 35 H 1.07996 * 126.65198 * 180.14943 * 8 7 6 36 36 H 0.97003 * 119.99512 * 0.02562 * 12 10 9 37 37 H 1.08994 * 110.72185 * 271.94018 * 15 13 12 38 38 H 1.08998 * 110.72108 * 35.03878 * 15 13 12 39 39 H 1.09003 * 109.87684 * 97.22358 * 16 15 13 40 40 H 1.08998 * 109.88721 * 218.38946 * 16 15 13 41 41 H 0.96999 * 119.99975 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.37091 * 265.28880 * 26 17 16 43 43 H 1.09003 * 110.36248 * 142.96737 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1483 -2.5879 0.0010 7 6 4.4060 -3.3313 -1.0977 8 6 4.8550 -4.5845 -0.6524 9 6 4.8397 -4.5447 0.7124 10 6 5.2261 -5.6376 1.6108 11 8 5.6022 -6.6994 1.1505 12 7 5.1646 -5.4659 2.9462 13 6 5.5500 -6.5578 3.8436 14 1 6.3269 -7.1754 3.3928 15 6 6.0049 -6.0103 5.2222 16 6 5.7044 -7.1851 6.1769 17 7 4.6835 -8.0226 5.5306 18 6 4.1572 -9.1779 6.0437 19 1 3.4079 -9.7230 5.4889 20 6 4.5867 -9.6486 7.2770 21 7 5.4996 -8.9840 7.9533 22 14 3.8683 -11.2242 7.9773 23 1 2.8662 -11.7752 7.0299 24 1 4.9548 -12.2157 8.1815 25 1 3.2122 -10.9340 9.2774 26 6 4.3198 -7.4122 4.2388 27 8 4.4075 -3.3236 1.0897 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 4.0088 -0.6530 0.8912 33 1 4.0096 -0.6533 -0.8889 34 1 4.2905 -3.0191 -2.1251 35 1 5.1509 -5.4198 -1.2696 36 1 4.8644 -4.6196 3.3130 37 1 7.0709 -5.7829 5.2142 38 1 5.4260 -5.1287 5.4972 39 1 6.6103 -7.7677 6.3442 40 1 5.3256 -6.8044 7.1254 41 1 5.7995 -9.3126 8.8153 42 1 3.4394 -6.7798 4.3525 43 1 4.1389 -8.1851 3.4917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015864090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:16 Heat of formation + Delta-G solvation = -54.866646 kcal Electronic energy + Delta-G solvation = -26036.387176 eV Core-core repulsion = 22083.091865 eV Total energy + Delta-G solvation = -3953.295311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.86720 -40.89598 -40.55090 -38.93789 -36.19350 -35.77419 -34.22005 -33.80031 -32.30896 -31.12920 -30.36046 -28.97173 -27.27155 -26.29370 -23.70700 -22.74467 -22.13004 -21.86578 -21.72485 -21.29128 -19.61674 -18.86781 -18.11973 -17.83747 -17.48705 -17.05610 -16.71006 -16.56361 -16.11144 -15.99309 -15.62732 -15.47690 -14.81081 -14.63733 -14.35424 -14.23191 -14.16451 -14.03914 -13.95827 -13.74258 -13.39986 -13.19797 -12.97419 -12.87304 -12.81493 -12.49225 -12.20180 -12.00378 -11.84852 -11.63227 -11.46351 -11.21035 -11.06023 -10.74465 -10.32996 -10.26381 -9.71766 -8.94546 -7.88090 -5.24490 -0.17734 1.13065 1.37223 1.45727 1.46794 1.57259 1.60586 1.98220 2.03269 2.40092 2.49117 3.28239 3.31084 3.62349 3.66827 3.84072 3.89065 3.94239 3.99562 4.15243 4.24229 4.41481 4.50020 4.54990 4.56996 4.66253 4.69529 4.72662 4.82906 4.86375 4.92057 4.99189 5.09173 5.25992 5.30317 5.36217 5.42277 5.60901 5.70318 5.74680 6.16400 6.37767 6.46124 6.94151 7.07390 7.16855 7.72261 8.35514 9.22324 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.002288 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.655029 B =12232.551649 C =12937.034735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.596 6.596 4 N -0.720 5.720 5 C 0.200 3.800 6 C -0.001 4.001 7 C -0.181 4.181 8 C -0.120 4.120 9 C -0.081 4.081 10 C 0.599 3.401 11 O -0.556 6.556 12 N -0.691 5.691 13 C 0.144 3.856 14 H 0.084 0.916 15 C -0.129 4.129 16 C 0.184 3.816 17 N -0.625 5.625 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.128 3.872 27 O -0.162 6.162 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.417 0.583 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.249 0.751 42 H 0.032 0.968 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 18.593 -19.679 27.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.477 6.477 4 N -0.375 5.375 5 C 0.077 3.923 6 C -0.053 4.053 7 C -0.200 4.200 8 C -0.140 4.140 9 C -0.134 4.134 10 C 0.387 3.613 11 O -0.437 6.437 12 N -0.341 5.341 13 C 0.038 3.962 14 H 0.102 0.898 15 C -0.168 4.168 16 C 0.059 3.941 17 N -0.352 5.352 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.809 3.191 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.001 3.999 27 O -0.058 6.058 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.254 0.746 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.254 0.746 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.403 18.546 -19.485 27.652 hybrid contribution -0.313 -1.246 0.878 1.556 sum -6.716 17.300 -18.606 26.279 Atomic orbital electron populations 1.21890 0.88175 1.06321 1.06091 1.21514 0.92159 0.82387 0.73899 1.90733 1.71936 1.33019 1.51984 1.46187 1.06172 1.09838 1.75266 1.19696 0.81015 0.86249 1.05316 1.22831 1.03624 0.94771 0.84116 1.21967 1.04498 0.92457 1.01100 1.22256 0.99465 0.99960 0.92367 1.21797 1.11493 0.85303 0.94780 1.16849 0.77402 0.85161 0.81907 1.90890 1.49207 1.26901 1.76664 1.45704 1.66252 1.17352 1.04831 1.21942 0.96611 0.88035 0.89602 0.89760 1.23014 1.02538 0.98603 0.92615 1.20946 0.91058 0.88990 0.93115 1.44677 1.46484 1.25718 1.18363 1.19460 1.17707 0.99040 1.01177 0.90265 1.25665 0.99811 1.02490 0.97753 1.70163 1.34033 1.40913 1.14695 0.84980 0.77467 0.78752 0.77934 1.19185 1.21803 1.21571 1.21930 0.95613 0.95016 0.87303 1.84012 1.64614 1.21561 1.35576 0.87972 0.88168 0.87633 0.74581 0.89892 0.86523 0.79293 0.81490 0.74565 0.89113 0.89210 0.96580 0.96384 0.94196 0.95019 0.95068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.39 71.24 0.74 -0.14 16 2 C 0.51 6.74 7.94 87.66 0.70 7.44 16 3 O -0.60 -13.69 17.10 -3.04 -0.05 -13.74 16 4 N -0.72 -6.92 5.55 -466.78 -2.59 -9.51 16 5 C 0.20 2.22 6.20 85.63 0.53 2.75 16 6 C 0.00 -0.01 6.68 24.97 0.17 0.15 16 7 C -0.18 -2.23 10.77 22.07 0.24 -2.00 16 8 C -0.12 -2.22 10.62 22.39 0.24 -1.98 16 9 C -0.08 -1.84 7.13 24.08 0.17 -1.67 16 10 C 0.60 17.61 7.79 86.44 0.67 18.28 16 11 O -0.56 -20.56 16.50 -4.32 -0.07 -20.63 16 12 N -0.69 -19.16 5.19 -439.94 -2.28 -21.44 16 13 C 0.14 5.07 3.42 46.38 0.16 5.23 16 14 H 0.08 3.31 7.54 -2.39 -0.02 3.29 16 15 C -0.13 -4.43 6.60 31.78 0.21 -4.22 16 16 C 0.18 8.96 5.37 86.73 0.47 9.42 16 17 N -0.63 -32.72 3.39 -691.98 -2.35 -35.07 16 18 C -0.24 -14.02 10.28 84.04 0.86 -13.16 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 21 N -0.95 -57.02 10.31 21.65 0.22 -56.80 16 22 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.13 5.45 6.93 86.85 0.60 6.05 16 27 O -0.16 -3.04 10.40 -4.99 -0.05 -3.09 16 28 H 0.10 0.05 7.91 -2.39 -0.02 0.03 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.42 2.33 8.30 -92.70 -0.77 1.56 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.42 9.23 8.32 -92.71 -0.77 8.46 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.09 2.62 8.00 -2.39 -0.02 2.61 16 39 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 40 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.44 369.14 0.58 -77.86 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -0.49 Total: 11.31 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.22 Total: 22.94 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -7.00 Total: -122.82 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.18 Total: -37.46 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.44 0.58 -77.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015864090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.989 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds