Wall clock time and date at job start Tue Mar 31 2020 13:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35732 * 117.00099 * 2 1 4 4 C 1.41855 * 126.78345 * 179.97438 * 3 2 1 5 5 C 1.36664 * 103.80860 * 179.97438 * 4 3 2 6 6 C 1.47548 * 126.88159 * 179.97438 * 5 4 3 7 7 O 1.21581 * 119.99561 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99701 * 179.73103 * 8 6 5 10 10 H 1.09004 * 115.55084 * 350.94917 * 9 8 6 11 11 C 1.53025 * 117.50562 * 136.68769 * 9 8 6 12 12 C 1.52820 * 117.49943 * 205.27485 * 9 8 6 13 13 C 1.53185 * 117.71296 * 144.89604 * 12 9 8 14 14 C 1.53350 * 108.76893 * 158.88414 * 13 12 9 15 15 N 1.46844 * 108.81715 * 51.30944 * 14 13 12 16 16 C 1.36932 * 120.38631 * 123.11707 * 15 14 13 17 17 H 1.08000 * 120.00276 * 208.88231 * 16 15 14 18 18 C 1.38813 * 119.99878 * 28.88941 * 16 15 14 19 19 N 1.31616 * 120.00121 * 17.85242 * 18 16 15 20 20 Si 1.86803 * 120.00150 * 197.85121 * 18 16 15 21 21 H 1.48491 * 109.47014 * 89.99646 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00265 * 20 18 16 23 23 H 1.48500 * 109.46720 * 330.00138 * 20 18 16 24 24 C 1.46847 * 119.22874 * 303.10134 * 15 14 13 25 25 C 1.53181 * 117.71656 * 0.13472 * 12 9 8 26 26 O 1.34660 * 106.24305 * 0.24621 * 5 4 3 27 27 N 1.20878 * 111.62966 * 359.55403 * 26 5 4 28 28 H 1.09005 * 109.47022 * 60.00440 * 1 2 3 29 29 H 1.09000 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47310 * 300.00385 * 1 2 3 31 31 H 1.07994 * 128.10045 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00238 * 359.97438 * 8 6 5 33 33 H 1.08999 * 117.50580 * 214.94800 * 11 9 8 34 34 H 1.09006 * 117.50493 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.58826 * 278.67375 * 13 12 9 36 36 H 1.08998 * 109.58870 * 39.09950 * 13 12 9 37 37 H 1.08994 * 109.58151 * 291.50573 * 14 13 12 38 38 H 1.09002 * 109.57840 * 171.10462 * 14 13 12 39 39 H 0.96999 * 120.00296 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.58110 * 297.09865 * 24 15 14 41 41 H 1.09003 * 109.57976 * 176.70144 * 24 15 14 42 42 H 1.09003 * 109.58488 * 320.90177 * 25 12 9 43 43 H 1.09001 * 109.58584 * 81.33310 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 0.0005 5 6 3.5391 2.8137 -0.0003 6 6 4.7785 3.6141 0.0003 7 8 5.8604 3.0594 0.0012 8 7 4.7114 4.9602 -0.0002 9 6 5.9420 5.7549 0.0064 10 1 6.8630 5.1941 0.1661 11 6 6.0050 6.9679 -0.9244 12 6 5.8667 7.1675 0.5847 13 6 7.0877 7.6910 1.3475 14 6 7.0340 9.2234 1.3726 15 7 5.7119 9.6432 1.8545 16 6 5.6003 10.4562 2.9506 17 1 4.7229 10.3997 3.5778 18 6 6.6149 11.3531 3.2556 19 7 7.4997 11.6826 2.3386 20 14 6.7244 12.0927 4.9675 21 1 7.5700 11.2266 5.8277 22 1 7.3273 13.4472 4.8839 23 1 5.3628 12.1921 5.5517 24 6 4.5109 9.1812 1.1470 25 6 4.5133 7.6480 1.1174 26 8 2.2759 3.2802 0.0043 27 7 1.4686 2.3805 -0.0010 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.2442 0.7261 0.0014 32 1 3.8483 5.4027 -0.0013 33 1 6.9675 7.2054 -1.3775 34 1 5.1305 7.1749 -1.5414 35 1 7.0729 7.3080 2.3678 36 1 7.9990 7.3655 0.8460 37 1 7.1963 9.6111 0.3669 38 1 7.8049 9.6049 2.0421 39 1 8.2089 12.3091 2.5519 40 1 4.5168 9.5663 0.1272 41 1 3.6213 9.5351 1.6679 42 1 3.7166 7.2939 0.4633 43 1 4.3598 7.2628 2.1255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016583071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:37 Heat of formation + Delta-G solvation = 47.798382 kcal Electronic energy + Delta-G solvation = -26666.319614 eV Core-core repulsion = 22717.476192 eV Total energy + Delta-G solvation = -3948.843422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.33990 -40.14062 -39.28361 -38.52235 -35.60196 -33.67218 -33.43219 -32.09801 -31.47616 -30.02978 -28.34122 -28.07438 -24.84406 -24.35779 -23.69820 -22.51696 -21.95187 -21.11872 -20.61216 -19.36097 -18.31801 -18.22579 -17.24694 -16.74139 -16.39239 -16.20209 -15.97077 -15.32608 -14.96956 -14.83272 -14.44965 -14.19324 -13.93764 -13.55665 -13.40076 -13.15827 -12.76480 -12.66757 -12.33295 -12.30732 -11.84337 -11.72425 -11.65681 -11.38862 -11.03043 -10.75738 -10.62058 -10.44306 -10.36100 -10.23267 -9.97123 -9.75285 -9.73301 -9.67587 -9.42423 -8.63221 -8.46048 -6.65925 -5.79878 -3.23201 0.41134 1.71678 2.22902 2.24399 2.67941 3.04463 3.37639 3.45005 3.45702 3.69841 4.08768 4.36511 4.48992 4.54274 4.63070 4.70294 4.81231 4.87632 5.03258 5.05270 5.06469 5.29636 5.37973 5.45201 5.60571 5.71094 5.96942 6.02544 6.04620 6.26264 6.35319 6.40433 6.48083 6.59214 6.60933 6.66574 6.79734 6.94648 7.12202 7.34887 7.64777 7.65714 7.78320 7.79251 8.45568 9.20892 9.84297 10.40598 11.27848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002431 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.881127 B =11515.819140 C =12088.306992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.204 3.796 4 C -0.154 4.154 5 C -0.054 4.054 6 C 0.607 3.393 7 O -0.510 6.510 8 N -0.676 5.676 9 C 0.063 3.937 10 H 0.137 0.863 11 C -0.178 4.178 12 C -0.092 4.092 13 C -0.106 4.106 14 C 0.173 3.827 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.150 3.850 25 C -0.100 4.100 26 O 0.118 5.882 27 N -0.388 5.388 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.191 0.809 32 H 0.409 0.591 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.091 0.909 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 -19.775 -7.090 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.120 4.120 6 C 0.389 3.611 7 O -0.385 6.385 8 N -0.325 5.325 9 C -0.042 4.042 10 H 0.155 0.845 11 C -0.216 4.216 12 C -0.094 4.094 13 C -0.146 4.146 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.023 3.977 25 C -0.140 4.140 26 O 0.052 5.948 27 N -0.112 5.112 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.208 0.792 32 H 0.245 0.755 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.267 -19.934 -7.074 23.512 hybrid contribution 0.000 0.142 0.767 0.780 sum -10.266 -19.793 -6.308 23.172 Atomic orbital electron populations 1.23123 0.76438 1.04371 1.02564 1.86224 1.22867 1.20294 1.89320 1.21896 0.90633 0.85865 1.00915 1.22180 0.94459 0.94922 1.06093 1.24092 0.87021 0.93888 1.07029 1.16393 0.85036 0.81963 0.77668 1.90884 1.26399 1.71169 1.50071 1.45292 1.10377 1.04764 1.72019 1.22060 0.88099 0.87247 1.06808 0.84494 1.23564 1.03624 1.00486 0.93941 1.22004 0.98923 0.94019 0.94415 1.21904 0.93054 1.00937 0.98688 1.20773 0.89063 0.87275 0.98235 1.43982 0.99929 1.55423 1.31835 1.19193 1.05460 1.12825 1.00839 0.91758 1.25049 0.99814 0.96886 0.97853 1.70029 1.17894 1.35210 1.31384 0.86308 0.77837 0.78173 0.84566 1.21422 1.21798 1.20447 1.20839 0.91177 0.90215 0.95472 1.21668 0.92477 0.99901 0.99906 1.84966 1.11779 1.29673 1.68424 1.74008 1.15783 0.96699 1.24671 0.92059 0.87402 0.92019 0.79166 0.75478 0.87964 0.88748 0.91983 0.92871 0.96284 0.89116 0.93612 0.96227 0.92650 0.93442 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.73 101.05 1.08 1.27 16 2 O -0.28 -2.67 10.57 -18.90 -0.20 -2.87 16 3 C 0.20 2.18 8.00 -16.72 -0.13 2.05 16 4 C -0.15 -1.58 10.97 -38.77 -0.43 -2.00 16 5 C -0.05 -0.59 7.29 -36.36 -0.26 -0.86 16 6 C 0.61 7.53 7.82 -12.47 -0.10 7.43 16 7 O -0.51 -7.72 16.48 5.29 0.09 -7.63 16 8 N -0.68 -7.90 5.34 -54.92 -0.29 -8.19 16 9 C 0.06 0.83 6.14 -68.01 -0.42 0.41 16 10 H 0.14 1.92 7.40 -51.93 -0.38 1.54 16 11 C -0.18 -2.35 9.86 -26.80 -0.26 -2.62 16 12 C -0.09 -1.42 1.94 -154.49 -0.30 -1.72 16 13 C -0.11 -1.92 5.83 -26.45 -0.15 -2.08 16 14 C 0.17 3.93 5.40 -3.67 -0.02 3.91 16 15 N -0.59 -14.19 2.94 -172.26 -0.51 -14.70 16 16 C -0.25 -6.78 9.54 -15.06 -0.14 -6.92 16 17 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 19 N -0.90 -25.64 11.23 55.49 0.62 -25.02 16 20 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 2.96 6.51 -3.67 -0.02 2.93 16 25 C -0.10 -1.58 5.37 -26.46 -0.14 -1.72 16 26 O 0.12 1.29 11.03 15.50 0.17 1.46 16 27 N -0.39 -4.39 11.50 30.47 0.35 -4.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.41 4.11 6.94 -40.82 -0.28 3.83 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 42 H 0.05 0.60 6.75 -51.93 -0.35 0.25 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -30.72 360.86 -6.68 -37.40 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.93 Total: 1.71 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.39 Total: 0.09 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.17 Total: -51.95 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.72 -6.68 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016583071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.201 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds