Wall clock time and date at job start Tue Mar 31 2020 13:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35732 * 117.00099 * 2 1 4 4 C 1.41855 * 126.78345 * 179.97438 * 3 2 1 5 5 C 1.36664 * 103.80860 * 179.97438 * 4 3 2 6 6 C 1.47548 * 126.88159 * 179.97438 * 5 4 3 7 7 O 1.21581 * 119.99561 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99701 * 179.73103 * 8 6 5 10 10 H 1.09004 * 115.55084 * 350.94917 * 9 8 6 11 11 C 1.53025 * 117.50562 * 136.68769 * 9 8 6 12 12 C 1.52820 * 117.49943 * 205.27485 * 9 8 6 13 13 C 1.53185 * 117.71296 * 144.89604 * 12 9 8 14 14 C 1.53350 * 108.76893 * 158.88414 * 13 12 9 15 15 N 1.46844 * 108.81715 * 51.30944 * 14 13 12 16 16 C 1.36932 * 120.38631 * 123.11707 * 15 14 13 17 17 H 1.08000 * 120.00276 * 208.88231 * 16 15 14 18 18 C 1.38813 * 119.99878 * 28.88941 * 16 15 14 19 19 N 1.31616 * 120.00121 * 17.85242 * 18 16 15 20 20 Si 1.86803 * 120.00150 * 197.85121 * 18 16 15 21 21 H 1.48491 * 109.47014 * 89.99646 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00265 * 20 18 16 23 23 H 1.48500 * 109.46720 * 330.00138 * 20 18 16 24 24 C 1.46847 * 119.22874 * 303.10134 * 15 14 13 25 25 C 1.53181 * 117.71656 * 0.13472 * 12 9 8 26 26 O 1.34660 * 106.24305 * 0.24621 * 5 4 3 27 27 N 1.20878 * 111.62966 * 359.55403 * 26 5 4 28 28 H 1.09005 * 109.47022 * 60.00440 * 1 2 3 29 29 H 1.09000 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47310 * 300.00385 * 1 2 3 31 31 H 1.07994 * 128.10045 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00238 * 359.97438 * 8 6 5 33 33 H 1.08999 * 117.50580 * 214.94800 * 11 9 8 34 34 H 1.09006 * 117.50493 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.58826 * 278.67375 * 13 12 9 36 36 H 1.08998 * 109.58870 * 39.09950 * 13 12 9 37 37 H 1.08994 * 109.58151 * 291.50573 * 14 13 12 38 38 H 1.09002 * 109.57840 * 171.10462 * 14 13 12 39 39 H 0.96999 * 120.00296 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.58110 * 297.09865 * 24 15 14 41 41 H 1.09003 * 109.57976 * 176.70144 * 24 15 14 42 42 H 1.09003 * 109.58488 * 320.90177 * 25 12 9 43 43 H 1.09001 * 109.58584 * 81.33310 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 0.0005 5 6 3.5391 2.8137 -0.0003 6 6 4.7785 3.6141 0.0003 7 8 5.8604 3.0594 0.0012 8 7 4.7114 4.9602 -0.0002 9 6 5.9420 5.7549 0.0064 10 1 6.8630 5.1941 0.1661 11 6 6.0050 6.9679 -0.9244 12 6 5.8667 7.1675 0.5847 13 6 7.0877 7.6910 1.3475 14 6 7.0340 9.2234 1.3726 15 7 5.7119 9.6432 1.8545 16 6 5.6003 10.4562 2.9506 17 1 4.7229 10.3997 3.5778 18 6 6.6149 11.3531 3.2556 19 7 7.4997 11.6826 2.3386 20 14 6.7244 12.0927 4.9675 21 1 7.5700 11.2266 5.8277 22 1 7.3273 13.4472 4.8839 23 1 5.3628 12.1921 5.5517 24 6 4.5109 9.1812 1.1470 25 6 4.5133 7.6480 1.1174 26 8 2.2759 3.2802 0.0043 27 7 1.4686 2.3805 -0.0010 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.2442 0.7261 0.0014 32 1 3.8483 5.4027 -0.0013 33 1 6.9675 7.2054 -1.3775 34 1 5.1305 7.1749 -1.5414 35 1 7.0729 7.3080 2.3678 36 1 7.9990 7.3655 0.8460 37 1 7.1963 9.6111 0.3669 38 1 7.8049 9.6049 2.0421 39 1 8.2089 12.3091 2.5519 40 1 4.5168 9.5663 0.1272 41 1 3.6213 9.5351 1.6679 42 1 3.7166 7.2939 0.4633 43 1 4.3598 7.2628 2.1255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016583071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:37 Heat of formation + Delta-G solvation = 26.483530 kcal Electronic energy + Delta-G solvation = -26667.243895 eV Core-core repulsion = 22717.476192 eV Total energy + Delta-G solvation = -3949.767703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.15659 -41.22205 -39.96887 -39.76901 -37.16985 -34.76533 -34.36154 -33.53846 -32.70216 -31.60094 -29.93774 -28.63049 -26.25162 -25.70593 -24.51258 -24.02919 -23.09311 -22.40462 -21.74039 -20.29243 -19.74984 -19.13147 -18.33107 -17.98904 -17.48600 -17.24698 -16.75105 -16.62691 -16.10079 -15.94558 -15.69615 -15.45630 -15.22422 -14.95451 -14.82490 -14.61154 -14.14091 -13.79482 -13.29556 -13.18914 -13.08120 -12.92730 -12.86587 -12.61028 -12.57688 -12.57016 -12.23392 -12.00893 -11.75269 -11.63914 -11.39531 -11.21444 -11.06727 -10.71150 -10.49518 -10.45188 -9.77940 -8.59733 -7.83942 -5.29742 -0.44303 0.91390 1.33513 1.47592 1.49640 1.53552 1.57576 1.73685 2.16553 2.53297 2.92586 2.94833 3.30580 3.58937 3.64626 3.70053 3.81871 3.88543 3.96507 3.99593 4.16246 4.24068 4.27153 4.55503 4.56721 4.61253 4.63420 4.77037 4.86650 4.89502 4.98923 5.07069 5.11762 5.19664 5.33900 5.37545 5.42719 5.58527 5.68878 5.80376 5.82337 6.17732 6.43947 6.78377 6.89421 7.19365 7.92241 8.42290 9.20833 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002431 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.881127 B =11515.819140 C =12088.306992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.289 6.289 3 C 0.200 3.800 4 C -0.149 4.149 5 C -0.058 4.058 6 C 0.614 3.386 7 O -0.538 6.538 8 N -0.668 5.668 9 C 0.084 3.916 10 H 0.133 0.867 11 C -0.164 4.164 12 C -0.114 4.114 13 C -0.094 4.094 14 C 0.179 3.821 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.269 1.269 24 C 0.144 3.856 25 C -0.086 4.086 26 O 0.120 5.880 27 N -0.398 5.398 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.419 0.581 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.001 0.999 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.019 0.981 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 -21.713 -7.614 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.196 6.196 3 C 0.003 3.997 4 C -0.171 4.171 5 C -0.124 4.124 6 C 0.398 3.602 7 O -0.415 6.415 8 N -0.317 5.317 9 C -0.022 4.022 10 H 0.151 0.849 11 C -0.202 4.202 12 C -0.115 4.115 13 C -0.133 4.133 14 C 0.053 3.947 15 N -0.332 5.332 16 C -0.390 4.390 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.791 3.209 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.194 1.194 24 C 0.019 3.981 25 C -0.125 4.125 26 O 0.053 5.947 27 N -0.122 5.122 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.796 -21.894 -7.605 26.006 hybrid contribution 0.371 0.692 0.892 1.188 sum -11.425 -21.202 -6.714 25.002 Atomic orbital electron populations 1.23397 0.74777 1.06373 1.02545 1.86232 1.24541 1.19685 1.89095 1.22053 0.90901 0.86123 1.00573 1.22434 0.94807 0.94981 1.04917 1.23797 0.86690 0.93904 1.08010 1.16415 0.85018 0.81939 0.76830 1.90877 1.27582 1.71698 1.51391 1.45189 1.10343 1.04573 1.71638 1.21819 0.88580 0.86382 1.05386 0.84900 1.23659 1.04730 0.99365 0.92471 1.21821 0.97337 0.96362 0.96005 1.21641 0.95612 0.97184 0.98912 1.20549 0.87791 0.90368 0.95950 1.44253 1.01561 1.55477 1.31922 1.19495 1.05240 1.12597 1.01717 0.91847 1.25754 0.99959 0.97895 1.00985 1.70172 1.18542 1.36145 1.32993 0.85342 0.77978 0.76941 0.80662 1.21389 1.22263 1.19403 1.21004 0.89343 0.93043 0.94712 1.21482 0.94040 0.96477 1.00537 1.84954 1.11606 1.29586 1.68552 1.73988 1.15999 0.97085 1.25124 0.91955 0.84492 0.92118 0.77729 0.74308 0.87509 0.86996 0.93250 0.91062 0.98078 0.92897 0.94167 0.96290 0.92892 0.89637 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.73 113.37 1.22 1.46 16 2 O -0.29 -4.94 10.57 -90.56 -0.96 -5.90 16 3 C 0.20 3.92 8.00 85.78 0.69 4.60 16 4 C -0.15 -2.76 10.97 22.80 0.25 -2.51 16 5 C -0.06 -1.15 7.29 24.36 0.18 -0.97 16 6 C 0.61 13.88 7.82 86.70 0.68 14.55 16 7 O -0.54 -15.31 16.48 -3.97 -0.07 -15.38 16 8 N -0.67 -13.73 5.34 -445.94 -2.38 -16.12 16 9 C 0.08 2.00 6.14 44.94 0.28 2.28 16 10 H 0.13 3.42 7.40 -2.39 -0.02 3.40 16 11 C -0.16 -3.87 9.86 30.55 0.30 -3.57 16 12 C -0.11 -3.29 1.94 -52.17 -0.10 -3.39 16 13 C -0.09 -3.37 5.83 30.77 0.18 -3.20 16 14 C 0.18 8.38 5.40 86.43 0.47 8.85 16 15 N -0.61 -29.71 2.94 -698.90 -2.05 -31.76 16 16 C -0.26 -14.13 9.54 84.03 0.80 -13.33 16 17 H 0.06 3.38 7.89 -2.91 -0.02 3.35 16 18 C -0.05 -2.80 4.88 84.86 0.41 -2.39 16 19 N -0.93 -54.78 11.23 21.65 0.24 -54.54 16 20 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.14 5.60 6.51 86.43 0.56 6.16 16 25 C -0.09 -2.54 5.37 30.77 0.17 -2.37 16 26 O 0.12 2.36 11.03 65.66 0.72 3.08 16 27 N -0.40 -8.27 11.50 -172.02 -1.98 -10.25 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.21 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.42 7.00 6.94 -92.71 -0.64 6.35 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.05 2.86 5.93 -2.39 -0.01 2.84 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 42 H 0.09 1.86 6.75 -2.39 -0.02 1.85 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -67.37 360.86 2.04 -65.33 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.40 Total: 12.54 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.07 Total: 6.19 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -6.17 Total: -112.67 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.30 Total: -18.19 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.37 2.04 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016583071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.818 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds