Wall clock time and date at job start Tue Mar 31 2020 13:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20920 * 124.56446 * 2 1 4 4 C 1.34170 * 112.19343 * 180.23060 * 3 2 1 5 5 C 1.48206 * 126.38626 * 179.78558 * 4 3 2 6 6 O 1.21494 * 119.99513 * 179.68505 * 5 4 3 7 7 N 1.34776 * 120.00062 * 359.68071 * 5 4 3 8 8 C 1.46499 * 119.99706 * 180.27612 * 7 5 4 9 9 H 1.09001 * 115.55186 * 350.41243 * 8 7 5 10 10 C 1.53028 * 117.50079 * 136.14325 * 8 7 5 11 11 C 1.52811 * 117.50097 * 204.72738 * 8 7 5 12 12 C 1.53182 * 117.71723 * 144.90355 * 11 8 7 13 13 C 1.53345 * 108.77370 * 158.88857 * 12 11 8 14 14 N 1.46835 * 108.81909 * 51.30663 * 13 12 11 15 15 C 1.36936 * 120.38770 * 123.11998 * 14 13 12 16 16 H 1.07996 * 120.00623 * 208.89108 * 15 14 13 17 17 C 1.38810 * 119.99754 * 28.88822 * 15 14 13 18 18 N 1.31623 * 119.99941 * 17.85299 * 17 15 14 19 19 Si 1.86799 * 120.00371 * 197.85080 * 17 15 14 20 20 H 1.48508 * 109.46868 * 60.00040 * 19 17 15 21 21 H 1.48495 * 109.47782 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47206 * 300.00739 * 19 17 15 23 23 C 1.46849 * 119.23525 * 303.10465 * 14 13 12 24 24 C 1.53183 * 117.71440 * 0.14094 * 11 8 7 25 25 C 1.36317 * 107.22659 * 359.51627 * 4 3 2 26 26 C 1.34821 * 124.57060 * 179.70535 * 2 1 3 27 27 O 1.21979 * 127.14927 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47278 * 270.29259 * 1 2 3 29 29 H 1.08996 * 109.47522 * 30.29742 * 1 2 3 30 30 H 1.09008 * 109.47394 * 150.29799 * 1 2 3 31 31 H 0.97002 * 120.00096 * 0.02562 * 7 5 4 32 32 H 1.08995 * 117.50777 * 214.95942 * 10 8 7 33 33 H 1.09004 * 117.50265 * 0.02562 * 10 8 7 34 34 H 1.09008 * 109.58717 * 278.67329 * 12 11 8 35 35 H 1.08996 * 109.58983 * 39.09910 * 12 11 8 36 36 H 1.08999 * 109.58109 * 291.50351 * 13 12 11 37 37 H 1.09002 * 109.58164 * 171.10837 * 13 12 11 38 38 H 0.97002 * 120.00052 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.57825 * 297.10640 * 23 14 13 40 40 H 1.08994 * 109.58559 * 176.70237 * 23 14 13 41 41 H 1.08997 * 109.59369 * 320.90498 * 24 11 8 42 42 H 1.09001 * 109.59076 * 81.33419 * 24 11 8 43 43 H 1.08001 * 127.99739 * 180.28642 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7083 -0.0050 5 6 4.5759 1.6854 -0.0109 6 8 5.7263 1.2946 -0.0093 7 7 4.3131 3.0073 -0.0182 8 6 5.4147 3.9729 -0.0301 9 1 6.4083 3.5548 0.1312 10 6 5.2960 5.1686 -0.9778 11 6 5.1366 5.3675 0.5292 12 6 6.2713 6.0745 1.2770 13 6 5.9947 7.5828 1.2817 14 7 4.6277 7.8122 1.7661 15 6 4.4033 8.6160 2.8518 16 1 3.5463 8.4412 3.4854 17 6 5.2774 9.6556 3.1381 18 7 6.1008 10.0973 2.2111 19 14 5.2852 10.4279 4.8390 20 1 5.6153 9.3925 5.8512 21 1 6.3015 11.5095 4.8870 22 1 3.9445 10.9957 5.1310 23 6 3.5038 7.1699 1.0727 24 6 3.7298 5.6532 1.0640 25 6 3.5769 -0.6499 0.0025 26 6 2.2299 -1.1101 0.0057 27 8 1.8473 -2.2684 0.0121 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8872 -0.5184 30 1 -0.3634 -0.8927 -0.5092 31 1 3.3946 3.3192 -0.0191 32 1 6.2115 5.5373 -1.4403 33 1 4.3980 5.2369 -1.5920 34 1 6.3169 5.7082 2.3027 35 1 7.2183 5.8782 0.7743 36 1 6.0944 7.9756 0.2698 37 1 6.7045 8.0824 1.9410 38 1 6.7114 10.8240 2.4111 39 1 3.4491 7.5370 0.0478 40 1 2.5743 7.3978 1.5944 41 1 2.9904 5.1773 0.4199 42 1 3.6384 5.2643 2.0781 43 1 4.4813 -1.2404 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016598018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:14 Heat of formation + Delta-G solvation = 63.542314 kcal Electronic energy + Delta-G solvation = -26940.636935 eV Core-core repulsion = 22992.476222 eV Total energy + Delta-G solvation = -3948.160714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.45636 -40.29348 -38.64755 -38.47670 -35.67652 -34.71348 -33.40019 -32.58017 -31.68702 -30.12571 -28.69554 -28.13879 -24.67948 -24.40771 -23.77614 -22.58786 -21.91650 -20.93927 -20.54872 -19.10385 -18.75757 -18.31062 -17.60923 -16.71120 -16.39326 -15.70539 -15.32698 -15.28004 -14.88912 -14.58839 -14.22056 -14.13590 -13.98401 -13.76926 -13.62089 -13.48052 -13.30053 -13.22075 -12.83542 -12.37535 -11.80676 -11.73779 -11.46074 -11.08460 -10.91232 -10.75992 -10.52329 -10.47880 -10.43112 -10.36950 -10.02070 -9.81367 -9.74163 -9.49599 -8.90105 -8.73291 -8.49952 -6.70646 -5.84262 -3.27721 0.18348 1.20438 2.22421 2.37878 2.64877 3.01501 3.34820 3.41320 3.42432 3.99681 4.17458 4.32489 4.45156 4.62331 4.65634 4.72615 4.78351 4.96356 4.96702 4.98140 5.33724 5.37109 5.44235 5.48304 5.54232 5.60892 5.87638 5.94941 5.96886 6.19057 6.24507 6.32551 6.52700 6.54330 6.60153 6.72692 6.87514 6.96022 7.25594 7.29677 7.57246 7.60766 7.62657 7.74472 8.41115 9.16358 9.79659 10.35759 11.23548 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.002597 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.372180 B =10777.650406 C =11367.458335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.452 5.452 3 O -0.003 6.003 4 C 0.034 3.966 5 C 0.604 3.396 6 O -0.497 6.497 7 N -0.675 5.675 8 C 0.061 3.939 9 H 0.139 0.861 10 C -0.177 4.177 11 C -0.091 4.091 12 C -0.106 4.106 13 C 0.173 3.827 14 N -0.589 5.589 15 C -0.256 4.256 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.901 3.099 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.150 3.850 24 C -0.100 4.100 25 C -0.236 4.236 26 C 0.481 3.519 27 O -0.523 6.523 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.091 0.909 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -15.889 -6.913 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.216 5.216 3 O -0.015 6.015 4 C -0.024 4.024 5 C 0.385 3.615 6 O -0.371 6.371 7 N -0.324 5.324 8 C -0.044 4.044 9 H 0.156 0.844 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.146 4.146 13 C 0.046 3.954 14 N -0.311 5.311 15 C -0.386 4.386 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.731 3.269 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.023 3.977 24 C -0.139 4.139 25 C -0.261 4.261 26 C 0.279 3.721 27 O -0.404 6.404 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.245 0.755 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.648 -16.418 -6.892 19.379 hybrid contribution -0.407 0.581 0.770 1.047 sum -8.055 -15.837 -6.122 18.793 Atomic orbital electron populations 1.22167 0.70486 1.05733 1.04654 1.46073 1.05933 0.99823 1.69748 1.84004 1.15229 1.21120 1.81110 1.23452 0.81575 0.96390 1.00974 1.16627 0.85439 0.81357 0.78032 1.90892 1.18206 1.78442 1.49589 1.45351 1.10818 1.04369 1.71823 1.22102 0.91230 0.84139 1.06926 0.84378 1.23568 1.03785 1.00389 0.93790 1.22011 0.98665 0.94006 0.94603 1.21909 0.93850 1.00018 0.98817 1.20774 0.87717 0.88675 0.98185 1.43965 1.00141 1.54038 1.32964 1.19132 1.11166 1.06889 1.01418 0.91829 1.25047 1.00383 0.96228 0.97815 1.70019 1.25495 1.27687 1.31276 0.86390 0.77397 0.78587 0.84511 1.20980 1.21611 1.20888 1.20831 0.91984 0.89282 0.95579 1.21671 0.92095 1.00301 0.99863 1.23344 0.99747 0.93308 1.09744 1.18343 0.86697 0.85548 0.81535 1.90974 1.79038 1.15839 1.54512 0.89934 0.88670 0.87597 0.75547 0.87855 0.88766 0.91940 0.92816 0.96267 0.89073 0.93508 0.96251 0.92661 0.93610 0.91569 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.52 11.22 59.84 0.67 1.19 16 2 N -0.45 -4.10 3.68 -69.77 -0.26 -4.35 16 3 O 0.00 -0.03 10.69 16.83 0.18 0.15 16 4 C 0.03 0.35 7.25 -36.18 -0.26 0.09 16 5 C 0.60 7.01 7.84 -12.16 -0.10 6.92 16 6 O -0.50 -7.21 16.46 5.37 0.09 -7.12 16 7 N -0.67 -7.26 5.34 -54.72 -0.29 -7.55 16 8 C 0.06 0.76 6.14 -68.01 -0.42 0.34 16 9 H 0.14 1.84 7.40 -51.93 -0.38 1.46 16 10 C -0.18 -2.22 9.86 -26.80 -0.26 -2.48 16 11 C -0.09 -1.35 1.94 -154.50 -0.30 -1.65 16 12 C -0.11 -1.86 5.83 -26.46 -0.15 -2.02 16 13 C 0.17 3.84 5.40 -3.68 -0.02 3.82 16 14 N -0.59 -13.86 2.94 -172.26 -0.51 -14.36 16 15 C -0.26 -6.74 9.54 -15.06 -0.14 -6.88 16 16 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 17 C 0.00 0.11 4.88 -17.43 -0.09 0.03 16 18 N -0.90 -25.28 11.23 55.49 0.62 -24.65 16 19 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.15 2.86 6.52 -3.67 -0.02 2.84 16 24 C -0.10 -1.49 5.37 -26.45 -0.14 -1.64 16 25 C -0.24 -2.54 10.94 -38.70 -0.42 -2.96 16 26 C 0.48 5.69 8.02 -14.66 -0.12 5.57 16 27 O -0.52 -7.80 17.84 4.94 0.09 -7.71 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.11 0.48 8.03 -51.92 -0.42 0.06 16 31 H 0.41 3.66 6.93 -40.82 -0.28 3.37 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 2.32 5.93 -51.93 -0.31 2.01 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 41 H 0.05 0.54 6.75 -51.93 -0.35 0.19 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -32.38 360.30 -7.38 -39.76 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.93 Total: 1.21 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.78 Total: 3.17 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.43 Total: -50.92 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.36 Total: -14.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.38 -7.38 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016598018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.300 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds