Wall clock time and date at job start Tue Mar 31 2020 13:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20920 * 124.56446 * 2 1 4 4 C 1.34170 * 112.19343 * 180.23060 * 3 2 1 5 5 C 1.48206 * 126.38626 * 179.78558 * 4 3 2 6 6 O 1.21494 * 119.99513 * 179.68505 * 5 4 3 7 7 N 1.34776 * 120.00062 * 359.68071 * 5 4 3 8 8 C 1.46499 * 119.99706 * 180.27612 * 7 5 4 9 9 H 1.09001 * 115.55186 * 350.41243 * 8 7 5 10 10 C 1.53028 * 117.50079 * 136.14325 * 8 7 5 11 11 C 1.52811 * 117.50097 * 204.72738 * 8 7 5 12 12 C 1.53182 * 117.71723 * 144.90355 * 11 8 7 13 13 C 1.53345 * 108.77370 * 158.88857 * 12 11 8 14 14 N 1.46835 * 108.81909 * 51.30663 * 13 12 11 15 15 C 1.36936 * 120.38770 * 123.11998 * 14 13 12 16 16 H 1.07996 * 120.00623 * 208.89108 * 15 14 13 17 17 C 1.38810 * 119.99754 * 28.88822 * 15 14 13 18 18 N 1.31623 * 119.99941 * 17.85299 * 17 15 14 19 19 Si 1.86799 * 120.00371 * 197.85080 * 17 15 14 20 20 H 1.48508 * 109.46868 * 60.00040 * 19 17 15 21 21 H 1.48495 * 109.47782 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47206 * 300.00739 * 19 17 15 23 23 C 1.46849 * 119.23525 * 303.10465 * 14 13 12 24 24 C 1.53183 * 117.71440 * 0.14094 * 11 8 7 25 25 C 1.36317 * 107.22659 * 359.51627 * 4 3 2 26 26 C 1.34821 * 124.57060 * 179.70535 * 2 1 3 27 27 O 1.21979 * 127.14927 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47278 * 270.29259 * 1 2 3 29 29 H 1.08996 * 109.47522 * 30.29742 * 1 2 3 30 30 H 1.09008 * 109.47394 * 150.29799 * 1 2 3 31 31 H 0.97002 * 120.00096 * 0.02562 * 7 5 4 32 32 H 1.08995 * 117.50777 * 214.95942 * 10 8 7 33 33 H 1.09004 * 117.50265 * 0.02562 * 10 8 7 34 34 H 1.09008 * 109.58717 * 278.67329 * 12 11 8 35 35 H 1.08996 * 109.58983 * 39.09910 * 12 11 8 36 36 H 1.08999 * 109.58109 * 291.50351 * 13 12 11 37 37 H 1.09002 * 109.58164 * 171.10837 * 13 12 11 38 38 H 0.97002 * 120.00052 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.57825 * 297.10640 * 23 14 13 40 40 H 1.08994 * 109.58559 * 176.70237 * 23 14 13 41 41 H 1.08997 * 109.59369 * 320.90498 * 24 11 8 42 42 H 1.09001 * 109.59076 * 81.33419 * 24 11 8 43 43 H 1.08001 * 127.99739 * 180.28642 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7083 -0.0050 5 6 4.5759 1.6854 -0.0109 6 8 5.7263 1.2946 -0.0093 7 7 4.3131 3.0073 -0.0182 8 6 5.4147 3.9729 -0.0301 9 1 6.4083 3.5548 0.1312 10 6 5.2960 5.1686 -0.9778 11 6 5.1366 5.3675 0.5292 12 6 6.2713 6.0745 1.2770 13 6 5.9947 7.5828 1.2817 14 7 4.6277 7.8122 1.7661 15 6 4.4033 8.6160 2.8518 16 1 3.5463 8.4412 3.4854 17 6 5.2774 9.6556 3.1381 18 7 6.1008 10.0973 2.2111 19 14 5.2852 10.4279 4.8390 20 1 5.6153 9.3925 5.8512 21 1 6.3015 11.5095 4.8870 22 1 3.9445 10.9957 5.1310 23 6 3.5038 7.1699 1.0727 24 6 3.7298 5.6532 1.0640 25 6 3.5769 -0.6499 0.0025 26 6 2.2299 -1.1101 0.0057 27 8 1.8473 -2.2684 0.0121 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8872 -0.5184 30 1 -0.3634 -0.8927 -0.5092 31 1 3.3946 3.3192 -0.0191 32 1 6.2115 5.5373 -1.4403 33 1 4.3980 5.2369 -1.5920 34 1 6.3169 5.7082 2.3027 35 1 7.2183 5.8782 0.7743 36 1 6.0944 7.9756 0.2698 37 1 6.7045 8.0824 1.9410 38 1 6.7114 10.8240 2.4111 39 1 3.4491 7.5370 0.0478 40 1 2.5743 7.3978 1.5944 41 1 2.9904 5.1773 0.4199 42 1 3.6384 5.2643 2.0781 43 1 4.4813 -1.2404 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016598018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:13 Heat of formation + Delta-G solvation = 42.325159 kcal Electronic energy + Delta-G solvation = -26941.556980 eV Core-core repulsion = 22992.476222 eV Total energy + Delta-G solvation = -3949.080758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.26114 -41.31574 -39.84675 -39.38685 -37.19527 -35.46981 -34.61506 -33.43503 -33.34990 -31.64548 -30.05521 -28.99137 -26.23308 -25.46238 -24.60195 -24.03831 -23.08193 -22.31767 -21.53664 -19.98393 -19.72284 -19.52686 -18.52916 -18.15756 -17.55611 -16.83062 -16.51294 -16.23380 -16.20705 -15.71619 -15.60490 -15.25356 -15.04867 -14.94406 -14.83929 -14.68384 -14.23815 -14.14290 -13.81035 -13.65987 -13.30863 -13.08553 -12.86805 -12.61401 -12.54684 -12.27981 -12.04293 -11.87972 -11.75711 -11.43670 -11.38056 -11.22487 -11.13598 -10.72256 -10.45114 -9.83686 -9.69736 -8.59921 -7.84531 -5.30085 -0.65833 0.48694 1.32703 1.47695 1.49347 1.50413 1.56501 1.75991 2.16629 2.53108 2.91928 3.30042 3.32534 3.59921 3.65000 3.79798 3.82978 3.87328 3.97485 4.14712 4.26865 4.34218 4.54587 4.58405 4.63323 4.68231 4.76220 4.79682 4.82943 4.88394 4.97905 5.06445 5.10566 5.17398 5.30970 5.35099 5.42239 5.58024 5.68310 5.81843 6.07533 6.41713 6.43480 6.72294 6.80582 7.19084 7.92186 8.41816 9.20201 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.002597 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.372180 B =10777.650406 C =11367.458335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.443 5.443 3 O 0.016 5.984 4 C 0.041 3.959 5 C 0.612 3.388 6 O -0.526 6.526 7 N -0.664 5.664 8 C 0.082 3.918 9 H 0.133 0.867 10 C -0.163 4.163 11 C -0.114 4.114 12 C -0.094 4.094 13 C 0.179 3.821 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.065 0.935 17 C -0.049 4.049 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.144 3.856 24 C -0.086 4.086 25 C -0.243 4.243 26 C 0.468 3.532 27 O -0.564 6.564 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.420 0.580 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.001 0.999 37 H 0.052 0.948 38 H 0.249 0.751 39 H 0.019 0.981 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -16.876 -7.466 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.203 5.203 3 O 0.003 5.997 4 C -0.018 4.018 5 C 0.395 3.605 6 O -0.403 6.403 7 N -0.314 5.314 8 C -0.023 4.023 9 H 0.151 0.849 10 C -0.201 4.201 11 C -0.115 4.115 12 C -0.134 4.134 13 C 0.053 3.947 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.578 5.578 19 Si 0.790 3.210 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.201 1.201 23 C 0.019 3.981 24 C -0.125 4.125 25 C -0.268 4.268 26 C 0.267 3.733 27 O -0.449 6.449 28 H 0.116 0.884 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.259 0.741 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.361 -17.401 -7.451 21.117 hybrid contribution 0.022 0.925 0.908 1.296 sum -9.339 -16.477 -6.543 20.037 Atomic orbital electron populations 1.22617 0.67910 1.07368 1.06216 1.46376 1.07112 0.99154 1.67656 1.84024 1.14706 1.20776 1.80161 1.23054 0.81829 0.95650 1.01313 1.16591 0.85187 0.81472 0.77269 1.90891 1.19557 1.78939 1.50874 1.45209 1.11035 1.03813 1.71308 1.21849 0.91490 0.83464 1.05523 0.84889 1.23666 1.04875 0.99231 0.92347 1.21832 0.97332 0.96089 0.96255 1.21639 0.96129 0.96607 0.99001 1.20544 0.86694 0.91574 0.95877 1.44235 1.01704 1.54191 1.33050 1.19462 1.10798 1.06726 1.02294 0.91781 1.25741 1.00683 0.97218 1.00824 1.70165 1.26462 1.28353 1.32869 0.85436 0.77288 0.77537 0.80763 1.20644 1.22198 1.20134 1.21007 0.90451 0.91812 0.94828 1.21487 0.93397 0.97022 1.00568 1.23449 0.99795 0.93700 1.09839 1.18476 0.87306 0.85593 0.81914 1.90948 1.79697 1.17338 1.56918 0.88432 0.85728 0.87328 0.74148 0.87568 0.86801 0.93256 0.91128 0.98098 0.92962 0.94163 0.96304 0.92820 0.89442 0.92349 0.78395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.22 127.77 1.43 2.07 16 2 N -0.44 -6.86 3.68 -492.75 -1.81 -8.67 16 3 O 0.02 0.23 10.69 70.40 0.75 0.98 16 4 C 0.04 0.73 7.25 24.47 0.18 0.91 16 5 C 0.61 12.53 7.84 86.89 0.68 13.21 16 6 O -0.53 -14.23 16.46 -3.70 -0.06 -14.29 16 7 N -0.66 -11.84 5.34 -445.33 -2.38 -14.22 16 8 C 0.08 1.80 6.14 44.94 0.28 2.07 16 9 H 0.13 3.19 7.40 -2.39 -0.02 3.17 16 10 C -0.16 -3.53 9.86 30.55 0.30 -3.23 16 11 C -0.11 -3.07 1.94 -52.17 -0.10 -3.17 16 12 C -0.09 -3.25 5.83 30.77 0.18 -3.08 16 13 C 0.18 8.15 5.40 86.43 0.47 8.61 16 14 N -0.61 -28.81 2.94 -698.92 -2.05 -30.86 16 15 C -0.26 -13.94 9.54 84.03 0.80 -13.13 16 16 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 17 C -0.05 -2.68 4.88 84.86 0.41 -2.26 16 18 N -0.93 -53.97 11.23 21.65 0.24 -53.73 16 19 Si 0.96 43.95 29.59 68.60 2.03 45.98 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.14 5.32 6.52 86.43 0.56 5.88 16 24 C -0.09 -2.32 5.37 30.77 0.17 -2.15 16 25 C -0.24 -4.88 10.94 22.84 0.25 -4.63 16 26 C 0.47 10.50 8.02 85.26 0.68 11.18 16 27 O -0.56 -16.68 17.84 -5.25 -0.09 -16.77 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.11 0.75 8.03 -2.38 -0.02 0.73 16 31 H 0.42 5.54 6.93 -92.71 -0.64 4.90 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.11 2.06 8.14 -2.38 -0.02 2.05 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.05 2.77 5.93 -2.39 -0.01 2.76 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 41 H 0.09 1.64 6.75 -2.39 -0.02 1.62 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -72.36 360.30 3.32 -69.05 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.40 Total: 10.25 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.29 Total: 12.28 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -6.00 Total: -107.48 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: 0.60 Total: -30.08 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.36 3.32 -69.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016598018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.372 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds