Wall clock time and date at job start Tue Mar 31 2020 13:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35685 * 117.00082 * 2 1 4 4 C 1.38743 * 119.58317 * 179.97438 * 3 2 1 5 5 C 1.39723 * 119.07305 * 180.02562 * 4 3 2 6 6 C 1.48176 * 120.85747 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00057 * 7.58160 * 6 5 4 8 8 N 1.34772 * 120.00057 * 187.58388 * 6 5 4 9 9 C 1.47428 * 125.65133 * 175.10460 * 8 6 5 10 10 C 1.55120 * 104.94321 * 204.03883 * 9 8 6 11 11 C 1.55154 * 101.48713 * 323.22123 * 10 9 8 12 12 H 1.09000 * 110.72501 * 276.83106 * 11 10 9 13 13 N 1.46502 * 110.71690 * 153.73102 * 11 10 9 14 14 C 1.36935 * 119.99702 * 157.43889 * 13 11 10 15 15 H 1.08005 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00240 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00325 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99610 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47006 * 269.99782 * 18 16 14 20 20 H 1.48495 * 109.47011 * 29.99902 * 18 16 14 21 21 H 1.48503 * 109.46984 * 149.99647 * 18 16 14 22 22 C 1.47023 * 125.65067 * 355.14980 * 8 6 5 23 23 C 1.39718 * 118.27932 * 0.27349 * 5 4 3 24 24 C 1.38739 * 119.07727 * 359.46392 * 23 5 4 25 25 O 1.35680 * 119.58349 * 180.25488 * 24 23 5 26 26 C 1.42897 * 116.99848 * 180.29764 * 25 24 23 27 27 N 1.32255 * 120.83154 * 0.54417 * 24 23 5 28 28 H 1.09000 * 109.46503 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46934 * 299.99876 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00112 * 1 2 3 31 31 H 1.08000 * 120.45904 * 0.04233 * 4 3 2 32 32 H 1.08992 * 110.36699 * 323.00587 * 9 8 6 33 33 H 1.09000 * 110.36418 * 85.21785 * 9 8 6 34 34 H 1.09007 * 111.16301 * 205.13453 * 10 9 8 35 35 H 1.08994 * 110.93542 * 81.22165 * 10 9 8 36 36 H 0.96999 * 120.00083 * 337.44944 * 13 11 10 37 37 H 0.96994 * 119.99741 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88034 * 59.48265 * 22 8 6 39 39 H 1.09000 * 110.01002 * 298.39608 * 22 8 6 40 40 H 1.08007 * 120.46044 * 179.72114 * 23 5 4 41 41 H 1.08994 * 109.47449 * 299.99155 * 26 25 24 42 42 H 1.08996 * 109.47683 * 59.99375 * 26 25 24 43 43 H 1.09001 * 109.47022 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0543 2.5220 0.0011 6 6 5.5317 2.6348 0.0011 7 8 6.2170 1.6411 -0.1382 8 7 6.1156 3.8396 0.1557 9 6 7.5646 4.0832 0.2765 10 6 7.6816 5.4349 1.0284 11 6 6.4825 6.2222 0.4371 12 1 6.7531 6.6799 -0.5144 13 7 6.0119 7.2371 1.3831 14 6 5.3079 8.3209 0.9303 15 1 5.0992 8.4273 -0.1240 16 6 4.8614 9.2823 1.8266 17 7 4.1843 10.3238 1.3915 18 14 5.2217 9.0980 3.6503 19 1 4.1210 8.3403 4.2981 20 1 6.5004 8.3649 3.8306 21 1 5.3300 10.4424 4.2718 22 6 5.4129 5.1288 0.2326 23 6 3.2483 3.6633 0.0069 24 6 1.8689 3.5146 0.0006 25 8 1.0765 4.6160 0.0009 26 6 -0.3359 4.3989 0.0009 27 7 1.3167 2.3129 0.0000 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0199 0.3661 0.0003 32 1 8.0365 3.2863 0.8511 33 1 8.0201 4.1590 -0.7108 34 1 8.6251 5.9313 0.8010 35 1 7.5651 5.2943 2.1029 36 1 6.1991 7.1415 2.3300 37 1 3.8727 10.9957 2.0178 38 1 4.7214 5.1243 1.0752 39 1 4.8676 5.3122 -0.6932 40 1 3.6930 4.6476 0.0121 41 1 -0.6170 3.8363 -0.8893 42 1 -0.6170 3.8355 0.8905 43 1 -0.8511 5.3595 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019091228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:28 Heat of formation + Delta-G solvation = -19.538552 kcal Electronic energy + Delta-G solvation = -27441.089101 eV Core-core repulsion = 23489.325730 eV Total energy + Delta-G solvation = -3951.763370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23059 -39.87350 -39.00351 -37.63552 -36.91745 -34.31504 -32.91217 -31.63437 -30.82846 -29.88075 -28.10821 -28.00894 -26.63522 -25.08270 -23.54891 -23.26632 -22.04978 -20.53948 -20.18269 -18.59365 -18.04437 -17.71656 -16.78205 -16.56079 -16.24317 -15.95667 -15.64722 -15.55806 -15.32022 -14.83154 -14.68736 -14.09374 -13.93632 -13.66998 -13.27846 -13.23321 -12.93633 -12.66607 -12.54669 -12.25990 -12.13727 -11.92511 -11.74879 -11.73481 -11.14574 -10.94348 -10.81815 -10.77873 -10.57669 -10.27311 -10.15292 -9.92997 -9.87069 -9.69428 -9.06283 -8.58277 -8.26600 -7.45897 -5.88373 -3.27209 0.61857 1.09514 2.62230 2.83195 2.99361 3.10769 3.30317 3.33193 3.39478 3.70703 4.03188 4.44216 4.49019 4.82326 4.87191 4.96902 5.01092 5.05505 5.05900 5.08098 5.17997 5.20784 5.26850 5.36795 5.40658 5.48017 5.50629 5.58358 5.66302 5.79089 5.84418 5.95988 6.02067 6.04799 6.11264 6.27330 6.36101 6.61587 6.69355 7.22915 7.50995 7.56084 7.84851 8.09117 8.29850 9.05948 9.78151 9.95298 11.28994 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.004234 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.503044 B = 6611.899143 C = 8433.959445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.303 6.303 3 C 0.351 3.649 4 C -0.175 4.175 5 C -0.018 4.018 6 C 0.575 3.425 7 O -0.537 6.537 8 N -0.601 5.601 9 C 0.111 3.889 10 C -0.145 4.145 11 C 0.176 3.824 12 H 0.079 0.921 13 N -0.736 5.736 14 C -0.257 4.257 15 H 0.094 0.906 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.290 1.290 22 C 0.058 3.942 23 C -0.224 4.224 24 C 0.360 3.640 25 O -0.293 6.293 26 C 0.040 3.960 27 N -0.584 5.584 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.365 0.635 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.188 0.812 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -16.881 -2.784 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.174 3.826 4 C -0.196 4.196 5 C -0.028 4.028 6 C 0.363 3.637 7 O -0.415 6.415 8 N -0.334 5.334 9 C -0.011 4.011 10 C -0.184 4.184 11 C 0.065 3.935 12 H 0.097 0.903 13 N -0.378 5.378 14 C -0.386 4.386 15 H 0.112 0.888 16 C -0.184 4.184 17 N -0.573 5.573 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.202 1.202 21 H -0.216 1.216 22 C -0.067 4.067 23 C -0.244 4.244 24 C 0.182 3.818 25 O -0.198 6.198 26 C -0.055 4.055 27 N -0.324 5.324 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.205 0.795 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.219 -17.286 -2.998 18.304 hybrid contribution 0.191 0.036 1.360 1.374 sum -5.028 -17.250 -1.638 18.042 Atomic orbital electron populations 1.22860 0.77205 1.02977 1.02425 1.86270 1.22897 1.24037 1.87804 1.19104 0.88608 0.83438 0.91486 1.20838 0.91427 0.98898 1.08475 1.19748 0.93462 0.92384 0.97181 1.17613 0.86371 0.82258 0.77458 1.90761 1.64365 1.36005 1.50364 1.48388 1.08726 1.06127 1.70175 1.22274 0.80512 0.97692 1.00658 1.23176 1.00323 0.94432 1.00424 1.21214 0.89792 0.87710 0.94831 0.90296 1.42740 1.66477 1.23778 1.04756 1.19071 1.26858 0.97475 0.95217 0.88837 1.24669 0.99607 0.96658 0.97441 1.69692 1.41442 1.12233 1.33916 0.86611 0.78129 0.77165 0.86969 1.20938 1.20205 1.21609 1.23794 0.98206 0.82677 1.02055 1.22679 0.90919 1.03019 1.07818 1.19291 0.88653 0.83622 0.90261 1.86391 1.19344 1.27000 1.87104 1.22887 0.77505 1.03102 1.02001 1.66614 1.42057 0.98689 1.25076 0.88534 0.92306 0.92317 0.82831 0.90487 0.91000 0.89430 0.90688 0.80167 0.92865 0.89576 0.90456 0.79542 0.92463 0.92446 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.66 10.47 -18.76 -0.20 -3.85 16 3 C 0.35 4.82 7.48 -17.18 -0.13 4.69 16 4 C -0.17 -2.48 9.60 -38.84 -0.37 -2.86 16 5 C -0.02 -0.27 5.90 -104.71 -0.62 -0.88 16 6 C 0.57 9.21 7.83 -12.18 -0.10 9.12 16 7 O -0.54 -9.69 16.76 5.36 0.09 -9.60 16 8 N -0.60 -8.94 3.33 -171.70 -0.57 -9.51 16 9 C 0.11 1.44 6.89 -2.41 -0.02 1.42 16 10 C -0.14 -1.94 6.72 -24.47 -0.16 -2.11 16 11 C 0.18 2.93 3.59 -66.10 -0.24 2.69 16 12 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 13 N -0.74 -15.55 4.97 -51.65 -0.26 -15.81 16 14 C -0.26 -6.63 10.45 -15.06 -0.16 -6.78 16 15 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 16 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 17 N -0.93 -27.62 13.97 55.49 0.78 -26.85 16 18 Si 0.88 20.87 27.74 -169.99 -4.71 16.15 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.09 6.52 56.52 0.37 -5.73 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.06 0.90 4.64 -3.07 -0.01 0.88 16 23 C -0.22 -3.38 8.60 -38.84 -0.33 -3.71 16 24 C 0.36 5.38 7.48 -17.18 -0.13 5.25 16 25 O -0.29 -4.32 10.47 -18.74 -0.20 -4.52 16 26 C 0.04 0.43 10.38 101.05 1.05 1.48 16 27 N -0.58 -8.14 8.02 -13.45 -0.11 -8.25 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.15 2.09 7.75 -52.49 -0.41 1.68 16 32 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 36 H 0.36 7.67 5.60 -40.82 -0.23 7.44 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 38 H 0.09 1.44 6.56 -51.93 -0.34 1.10 16 39 H 0.08 1.17 6.82 -51.93 -0.35 0.82 16 40 H 0.19 2.88 2.94 -52.90 -0.16 2.72 16 41 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -31.69 357.13 -5.77 -37.46 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.71 Total: 8.53 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -0.27 Total: 10.87 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.16 Total: -60.41 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.30 Total: -17.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.71 Total: 16.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.69 -5.77 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019091228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.919 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds