Wall clock time and date at job start Tue Mar 31 2020 13:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35685 * 117.00082 * 2 1 4 4 C 1.38743 * 119.58317 * 179.97438 * 3 2 1 5 5 C 1.39723 * 119.07305 * 180.02562 * 4 3 2 6 6 C 1.48176 * 120.85747 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00057 * 7.58160 * 6 5 4 8 8 N 1.34772 * 120.00057 * 187.58388 * 6 5 4 9 9 C 1.47428 * 125.65133 * 175.10460 * 8 6 5 10 10 C 1.55120 * 104.94321 * 204.03883 * 9 8 6 11 11 C 1.55154 * 101.48713 * 323.22123 * 10 9 8 12 12 H 1.09000 * 110.72501 * 276.83106 * 11 10 9 13 13 N 1.46502 * 110.71690 * 153.73102 * 11 10 9 14 14 C 1.36935 * 119.99702 * 157.43889 * 13 11 10 15 15 H 1.08005 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00240 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00325 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99610 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47006 * 269.99782 * 18 16 14 20 20 H 1.48495 * 109.47011 * 29.99902 * 18 16 14 21 21 H 1.48503 * 109.46984 * 149.99647 * 18 16 14 22 22 C 1.47023 * 125.65067 * 355.14980 * 8 6 5 23 23 C 1.39718 * 118.27932 * 0.27349 * 5 4 3 24 24 C 1.38739 * 119.07727 * 359.46392 * 23 5 4 25 25 O 1.35680 * 119.58349 * 180.25488 * 24 23 5 26 26 C 1.42897 * 116.99848 * 180.29764 * 25 24 23 27 27 N 1.32255 * 120.83154 * 0.54417 * 24 23 5 28 28 H 1.09000 * 109.46503 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46934 * 299.99876 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00112 * 1 2 3 31 31 H 1.08000 * 120.45904 * 0.04233 * 4 3 2 32 32 H 1.08992 * 110.36699 * 323.00587 * 9 8 6 33 33 H 1.09000 * 110.36418 * 85.21785 * 9 8 6 34 34 H 1.09007 * 111.16301 * 205.13453 * 10 9 8 35 35 H 1.08994 * 110.93542 * 81.22165 * 10 9 8 36 36 H 0.96999 * 120.00083 * 337.44944 * 13 11 10 37 37 H 0.96994 * 119.99741 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88034 * 59.48265 * 22 8 6 39 39 H 1.09000 * 110.01002 * 298.39608 * 22 8 6 40 40 H 1.08007 * 120.46044 * 179.72114 * 23 5 4 41 41 H 1.08994 * 109.47449 * 299.99155 * 26 25 24 42 42 H 1.08996 * 109.47683 * 59.99375 * 26 25 24 43 43 H 1.09001 * 109.47022 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0543 2.5220 0.0011 6 6 5.5317 2.6348 0.0011 7 8 6.2170 1.6411 -0.1382 8 7 6.1156 3.8396 0.1557 9 6 7.5646 4.0832 0.2765 10 6 7.6816 5.4349 1.0284 11 6 6.4825 6.2222 0.4371 12 1 6.7531 6.6799 -0.5144 13 7 6.0119 7.2371 1.3831 14 6 5.3079 8.3209 0.9303 15 1 5.0992 8.4273 -0.1240 16 6 4.8614 9.2823 1.8266 17 7 4.1843 10.3238 1.3915 18 14 5.2217 9.0980 3.6503 19 1 4.1210 8.3403 4.2981 20 1 6.5004 8.3649 3.8306 21 1 5.3300 10.4424 4.2718 22 6 5.4129 5.1288 0.2326 23 6 3.2483 3.6633 0.0069 24 6 1.8689 3.5146 0.0006 25 8 1.0765 4.6160 0.0009 26 6 -0.3359 4.3989 0.0009 27 7 1.3167 2.3129 0.0000 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0199 0.3661 0.0003 32 1 8.0365 3.2863 0.8511 33 1 8.0201 4.1590 -0.7108 34 1 8.6251 5.9313 0.8010 35 1 7.5651 5.2943 2.1029 36 1 6.1991 7.1415 2.3300 37 1 3.8727 10.9957 2.0178 38 1 4.7214 5.1243 1.0752 39 1 4.8676 5.3122 -0.6932 40 1 3.6930 4.6476 0.0121 41 1 -0.6170 3.8363 -0.8893 42 1 -0.6170 3.8355 0.8905 43 1 -0.8511 5.3595 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019091228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:27 Heat of formation + Delta-G solvation = -44.144792 kcal Electronic energy + Delta-G solvation = -27442.156107 eV Core-core repulsion = 23489.325730 eV Total energy + Delta-G solvation = -3952.830377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34560 -41.06821 -40.01065 -38.92646 -38.00895 -36.00327 -34.12035 -33.37873 -31.97141 -31.17736 -29.43498 -28.92392 -27.52697 -26.38213 -25.06090 -24.48244 -23.27189 -21.96161 -21.31364 -19.80763 -19.54400 -19.04162 -17.99713 -17.66521 -17.41526 -17.08401 -16.70309 -16.58107 -16.50036 -16.39580 -15.81244 -15.66289 -15.22018 -14.75441 -14.74231 -14.44323 -14.22445 -14.08000 -13.80565 -13.54133 -13.17219 -13.00883 -12.93708 -12.64756 -12.60931 -12.38188 -12.20400 -12.12354 -11.81189 -11.76614 -11.60314 -11.47043 -11.16085 -11.02930 -10.85111 -9.80533 -9.36369 -9.34291 -7.98096 -5.33481 -0.54071 -0.02034 1.42626 1.44764 1.51420 1.55117 1.62280 1.93921 2.06487 2.52029 2.56240 2.94033 3.29182 3.31508 3.61367 3.70714 3.76400 3.83835 3.94124 4.17796 4.29648 4.30662 4.33284 4.37088 4.37759 4.40492 4.45618 4.57957 4.67561 4.69901 4.72297 4.81176 4.88598 4.93244 4.95308 5.12876 5.18179 5.34971 5.71639 5.82063 6.20012 6.24179 6.27796 6.46624 6.84781 7.10624 7.84239 8.02188 9.22583 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.004234 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.503044 B = 6611.899143 C = 8433.959445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.353 3.647 4 C -0.177 4.177 5 C -0.023 4.023 6 C 0.575 3.425 7 O -0.558 6.558 8 N -0.599 5.599 9 C 0.110 3.890 10 C -0.130 4.130 11 C 0.167 3.833 12 H 0.078 0.922 13 N -0.738 5.738 14 C -0.231 4.231 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.979 5.979 18 Si 0.945 3.055 19 H -0.284 1.284 20 H -0.247 1.247 21 H -0.300 1.300 22 C 0.070 3.930 23 C -0.233 4.233 24 C 0.352 3.648 25 O -0.313 6.313 26 C 0.034 3.966 27 N -0.578 5.578 28 H 0.128 0.872 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.368 0.632 37 H 0.257 0.743 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.181 0.819 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -18.805 -2.119 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.214 6.214 3 C 0.175 3.825 4 C -0.199 4.199 5 C -0.033 4.033 6 C 0.364 3.636 7 O -0.439 6.439 8 N -0.330 5.330 9 C -0.011 4.011 10 C -0.169 4.169 11 C 0.057 3.943 12 H 0.096 0.904 13 N -0.381 5.381 14 C -0.362 4.362 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.629 5.629 18 Si 0.773 3.227 19 H -0.210 1.210 20 H -0.171 1.171 21 H -0.228 1.228 22 C -0.055 4.055 23 C -0.253 4.253 24 C 0.174 3.826 25 O -0.220 6.220 26 C -0.060 4.060 27 N -0.319 5.319 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.202 0.798 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.197 0.803 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.665 -19.270 -2.344 19.964 hybrid contribution -0.051 0.529 1.036 1.165 sum -4.716 -18.740 -1.307 19.369 Atomic orbital electron populations 1.23163 0.75225 1.05148 1.02510 1.86284 1.24844 1.22944 1.87328 1.19223 0.88658 0.83958 0.90697 1.20932 0.91887 0.98752 1.08326 1.19716 0.93078 0.92763 0.97751 1.17706 0.86639 0.82145 0.77099 1.90745 1.64888 1.36580 1.51637 1.48394 1.09591 1.05490 1.69565 1.22441 0.79360 0.97607 1.01722 1.23113 0.99524 0.93877 1.00369 1.21422 0.91374 0.87206 0.94287 0.90380 1.42686 1.66191 1.23530 1.05646 1.19041 1.25203 0.98047 0.93912 0.91628 1.25404 1.00562 0.96773 1.02011 1.69865 1.44069 1.13706 1.35298 0.85565 0.79106 0.76698 0.81349 1.21006 1.17105 1.22759 1.23486 0.97525 0.82744 1.01735 1.22581 0.91279 1.02677 1.08782 1.19367 0.88740 0.84045 0.90406 1.86367 1.21180 1.27361 1.87069 1.23140 0.75658 1.04488 1.02696 1.66656 1.41843 0.98421 1.24961 0.85404 0.92270 0.92138 0.82337 0.89602 0.89379 0.87266 0.90448 0.79773 0.93445 0.90657 0.90404 0.80280 0.91551 0.91903 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.38 113.37 1.18 1.68 16 2 O -0.31 -6.88 10.47 -90.04 -0.94 -7.82 16 3 C 0.35 9.30 7.48 84.75 0.63 9.93 16 4 C -0.18 -4.90 9.60 22.75 0.22 -4.68 16 5 C -0.02 -0.68 5.90 -19.92 -0.12 -0.80 16 6 C 0.58 17.87 7.83 86.89 0.68 18.55 16 7 O -0.56 -19.51 16.76 -3.75 -0.06 -19.57 16 8 N -0.60 -16.92 3.33 -815.43 -2.71 -19.63 16 9 C 0.11 2.57 6.89 86.93 0.60 3.17 16 10 C -0.13 -3.11 6.72 32.06 0.22 -2.89 16 11 C 0.17 5.30 3.59 46.18 0.17 5.46 16 12 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 13 N -0.74 -30.23 4.97 -317.33 -1.58 -31.81 16 14 C -0.23 -11.99 10.45 84.04 0.88 -11.11 16 15 H 0.07 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 17 N -0.98 -59.99 13.97 21.65 0.30 -59.69 16 18 Si 0.94 42.90 27.74 68.60 1.90 44.81 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 22 C 0.07 2.12 4.64 86.73 0.40 2.53 16 23 C -0.23 -7.01 8.60 22.75 0.20 -6.81 16 24 C 0.35 10.44 7.48 84.75 0.63 11.07 16 25 O -0.31 -9.21 10.47 -89.98 -0.94 -10.15 16 26 C 0.03 0.71 10.38 113.37 1.18 1.89 16 27 N -0.58 -15.56 8.02 -422.19 -3.39 -18.95 16 28 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 31 H 0.16 4.17 7.75 -2.91 -0.02 4.15 16 32 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.08 1.86 8.00 -2.39 -0.02 1.84 16 36 H 0.37 14.62 5.60 -92.71 -0.52 14.10 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.08 2.49 6.56 -2.39 -0.02 2.48 16 39 H 0.08 2.36 6.82 -2.39 -0.02 2.35 16 40 H 0.18 5.60 2.94 -3.30 -0.01 5.59 16 41 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 43 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.49 357.13 0.38 -68.11 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.47 Total: 29.34 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 7.33 Total: 25.37 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.37 Total: -130.08 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.95 Total: -37.55 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.90 Total: 44.81 kcal Total: -68.49 0.38 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019091228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.969 kcal (2) G-P(sol) polarization free energy of solvation -68.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds