Wall clock time and date at job start Tue Mar 31 2020 13:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99587 * 2 1 4 4 N 1.34771 * 120.00030 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99743 * 179.97438 * 4 2 1 6 6 C 1.50702 * 109.46902 * 179.97438 * 5 4 2 7 7 C 1.35130 * 125.61265 * 89.97695 * 6 5 4 8 8 C 1.40363 * 107.11504 * 179.77616 * 7 6 5 9 9 C 1.36547 * 106.70707 * 0.35752 * 8 7 6 10 10 C 1.46651 * 125.98822 * 179.90513 * 9 8 7 11 11 O 1.21695 * 120.00416 * 359.71416 * 10 9 8 12 12 N 1.34778 * 120.00144 * 179.71028 * 10 9 8 13 13 C 1.47022 * 125.64582 * 0.03165 * 12 10 9 14 14 C 1.54322 * 107.27131 * 178.91315 * 13 12 10 15 15 C 1.55159 * 102.94499 * 337.80902 * 14 13 12 16 16 H 1.08997 * 111.00112 * 277.39164 * 15 14 13 17 17 N 1.46490 * 111.00840 * 153.57161 * 15 14 13 18 18 C 1.36935 * 120.00121 * 154.99548 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.47426 * 125.65063 * 179.97438 * 12 10 9 27 27 O 1.33923 * 125.62139 * 269.97830 * 6 5 4 28 28 H 1.09000 * 109.46668 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47379 * 300.00083 * 1 2 3 30 30 H 1.08996 * 109.47028 * 60.00322 * 1 2 3 31 31 H 0.96999 * 120.00209 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.46897 * 60.00260 * 5 4 2 33 33 H 1.08996 * 109.47113 * 299.99865 * 5 4 2 34 34 H 1.08004 * 126.44409 * 359.97438 * 7 6 5 35 35 H 1.08003 * 126.64987 * 180.22154 * 8 7 6 36 36 H 1.08997 * 109.88394 * 59.49733 * 13 12 10 37 37 H 1.08999 * 109.88459 * 298.33292 * 13 12 10 38 38 H 1.08998 * 110.72649 * 219.43940 * 14 13 12 39 39 H 1.09001 * 110.87161 * 96.24058 * 14 13 12 40 40 H 0.97000 * 120.00577 * 335.00148 * 17 15 14 41 41 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 42 42 H 1.09006 * 110.36031 * 85.31734 * 26 12 10 43 43 H 1.08995 * 110.37034 * 323.00155 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0013 7 6 4.4098 -3.3311 -1.0965 8 6 4.8588 -4.5838 -0.6499 9 6 4.8407 -4.5436 0.7148 10 6 5.2285 -5.6351 1.6143 11 8 5.6041 -6.6977 1.1551 12 7 5.1691 -5.4614 2.9495 13 6 4.7354 -4.2355 3.6355 14 6 4.8056 -4.5101 5.1525 15 6 4.7338 -6.0581 5.2292 16 1 3.7018 -6.4046 5.1734 17 7 5.3867 -6.5547 6.4429 18 6 5.0197 -7.7631 6.9723 19 1 4.2493 -8.3503 6.4948 20 6 5.6380 -8.2335 8.1227 21 7 6.5766 -7.5176 8.7050 22 14 5.1378 -9.8822 8.8444 23 1 5.9414 -10.1531 10.0636 24 1 3.6962 -9.8503 9.1994 25 1 5.3779 -10.9536 7.8446 26 6 5.5269 -6.4695 3.9639 27 8 4.4092 -3.3219 1.0907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0096 -0.6527 0.8895 33 1 4.0089 -0.6539 -0.8905 34 1 4.2977 -3.0188 -2.1243 35 1 5.1583 -5.4186 -1.2663 36 1 3.7119 -3.9930 3.3497 37 1 5.3999 -3.4111 3.3769 38 1 3.9566 -4.0587 5.6659 39 1 5.7446 -4.1465 5.5700 40 1 6.0788 -6.0276 6.8717 41 1 6.8365 -6.6616 8.3300 42 1 6.5984 -6.4435 4.1630 43 1 5.2257 -7.4636 3.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019523213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:04 Heat of formation + Delta-G solvation = -36.822344 kcal Electronic energy + Delta-G solvation = -26351.508388 eV Core-core repulsion = 22398.995536 eV Total energy + Delta-G solvation = -3952.512852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.08862 -40.00590 -39.69700 -37.49908 -35.55399 -34.55046 -33.42847 -31.94438 -31.49023 -29.86414 -29.62291 -27.82376 -26.28096 -24.10507 -22.95764 -22.18385 -21.47694 -21.16829 -20.46071 -19.87312 -17.99718 -17.59664 -17.37048 -17.13072 -16.44993 -16.01882 -15.96986 -15.48668 -15.13770 -14.68369 -14.21888 -14.08817 -13.80484 -13.77244 -13.61590 -13.39588 -13.28014 -13.11428 -12.96687 -12.69769 -12.63315 -12.38368 -12.33301 -11.48060 -11.25022 -10.78596 -10.70546 -10.54688 -10.40034 -10.33642 -10.27089 -10.03240 -9.69499 -9.28501 -9.09666 -9.02029 -8.52180 -7.21687 -6.21250 -3.24135 0.69097 1.85912 2.15194 2.21197 2.87239 3.01583 3.08571 3.48202 3.51231 3.68606 3.98714 4.35392 4.43381 4.54463 4.58318 4.70619 4.79055 4.82295 4.95681 5.01149 5.10208 5.15231 5.28260 5.35639 5.38339 5.44391 5.49818 5.62935 5.65926 5.76317 5.80856 5.90496 5.98877 6.08703 6.19522 6.27370 6.41321 6.58913 6.70331 6.93232 7.47973 7.68766 7.70347 8.00516 8.64201 9.06952 9.93664 10.06024 11.26363 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.002472 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.406251 B =11323.626753 C =12297.699068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.546 6.546 4 N -0.729 5.729 5 C 0.200 3.800 6 C -0.020 4.020 7 C -0.189 4.189 8 C -0.131 4.131 9 C -0.047 4.047 10 C 0.606 3.394 11 O -0.522 6.522 12 N -0.601 5.601 13 C 0.107 3.893 14 C -0.143 4.143 15 C 0.178 3.822 16 H 0.071 0.929 17 N -0.721 5.721 18 C -0.342 4.342 19 H 0.068 0.932 20 C -0.039 4.039 21 N -0.938 5.938 22 Si 1.081 2.919 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.081 3.919 27 O -0.150 6.150 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.406 0.594 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.371 0.629 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 14.061 -20.255 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.423 6.423 4 N -0.384 5.384 5 C 0.077 3.923 6 C -0.072 4.072 7 C -0.209 4.209 8 C -0.151 4.151 9 C -0.100 4.100 10 C 0.393 3.607 11 O -0.401 6.401 12 N -0.334 5.334 13 C -0.016 4.016 14 C -0.182 4.182 15 C 0.066 3.934 16 H 0.089 0.911 17 N -0.362 5.362 18 C -0.472 4.472 19 H 0.086 0.914 20 C -0.237 4.237 21 N -0.583 5.583 22 Si 0.911 3.089 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.043 4.043 27 O -0.046 6.046 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.241 0.759 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.205 0.795 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.791 13.107 -19.017 25.086 hybrid contribution -0.200 0.774 -1.455 1.660 sum -9.990 13.881 -20.472 26.676 Atomic orbital electron populations 1.21854 0.91064 1.04507 1.05588 1.20878 0.90786 0.83036 0.75172 1.90755 1.70733 1.31296 1.49484 1.46237 1.06444 1.09507 1.76193 1.19631 0.80466 0.87315 1.04872 1.22529 1.05208 0.94793 0.84708 1.21661 1.05566 0.93897 0.99734 1.21969 1.01295 0.98995 0.92886 1.22312 1.08089 0.84939 0.94685 1.16221 0.78969 0.85060 0.80438 1.90897 1.48550 1.25219 1.75398 1.48456 1.63732 1.16727 1.04458 1.22061 0.99799 0.86657 0.93099 1.22981 1.03198 0.98881 0.93110 1.21238 0.95819 0.90418 0.85967 0.91139 1.42313 1.45078 1.22437 1.26369 1.20063 1.20396 0.96642 1.10129 0.91437 1.25841 0.97235 1.05561 0.95110 1.70904 1.31243 1.14121 1.42005 0.83241 0.75262 0.74222 0.76215 1.20950 1.22116 1.22063 1.23521 1.00919 0.91683 0.88211 1.84142 1.64147 1.21978 1.34302 0.90395 0.88409 0.88519 0.75890 0.89242 0.87917 0.82412 0.81935 0.91315 0.91448 0.89998 0.90531 0.79539 0.93318 0.91175 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.39 36.01 0.37 -0.29 16 2 C 0.51 3.90 7.94 -10.99 -0.09 3.81 16 3 O -0.55 -6.57 17.10 5.56 0.10 -6.48 16 4 N -0.73 -4.50 5.55 -61.47 -0.34 -4.84 16 5 C 0.20 1.41 6.20 -5.19 -0.03 1.38 16 6 C -0.02 -0.17 6.68 -35.41 -0.24 -0.41 16 7 C -0.19 -1.54 10.77 -39.89 -0.43 -1.97 16 8 C -0.13 -1.41 10.62 -39.39 -0.42 -1.83 16 9 C -0.05 -0.61 6.95 -36.80 -0.26 -0.87 16 10 C 0.61 9.86 7.82 -12.86 -0.10 9.76 16 11 O -0.52 -10.07 17.12 5.19 0.09 -9.99 16 12 N -0.60 -9.61 3.33 -172.08 -0.57 -10.19 16 13 C 0.11 1.42 5.54 -3.06 -0.02 1.40 16 14 C -0.14 -2.11 6.60 -24.90 -0.16 -2.27 16 15 C 0.18 3.37 3.71 -65.80 -0.24 3.13 16 16 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 17 N -0.72 -17.16 5.24 -51.37 -0.27 -17.43 16 18 C -0.34 -9.27 9.96 -15.06 -0.15 -9.42 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 21 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 22 Si 1.08 25.35 29.92 -169.99 -5.09 20.26 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.08 1.51 6.60 -2.54 -0.02 1.50 16 27 O -0.15 -1.67 8.28 5.02 0.04 -1.63 16 28 H 0.08 0.15 7.91 -51.93 -0.41 -0.27 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.41 1.78 8.30 -40.82 -0.34 1.44 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 37 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.14 8.00 -51.93 -0.42 0.73 16 40 H 0.37 9.03 6.59 -40.82 -0.27 8.77 16 41 H 0.26 7.52 6.77 -40.82 -0.28 7.25 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.53 8.04 -51.93 -0.42 1.12 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -34.90 368.81 -7.54 -42.44 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.94 Total: 7.05 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.87 Total: 2.71 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.42 Total: -59.94 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.23 Total: -18.09 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.90 -7.54 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019523213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.621 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds