Wall clock time and date at job start Tue Mar 31 2020 13:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99587 * 2 1 4 4 N 1.34771 * 120.00030 * 179.97438 * 2 1 3 5 5 C 1.46508 * 119.99743 * 179.97438 * 4 2 1 6 6 C 1.50702 * 109.46902 * 179.97438 * 5 4 2 7 7 C 1.35130 * 125.61265 * 89.97695 * 6 5 4 8 8 C 1.40363 * 107.11504 * 179.77616 * 7 6 5 9 9 C 1.36547 * 106.70707 * 0.35752 * 8 7 6 10 10 C 1.46651 * 125.98822 * 179.90513 * 9 8 7 11 11 O 1.21695 * 120.00416 * 359.71416 * 10 9 8 12 12 N 1.34778 * 120.00144 * 179.71028 * 10 9 8 13 13 C 1.47022 * 125.64582 * 0.03165 * 12 10 9 14 14 C 1.54322 * 107.27131 * 178.91315 * 13 12 10 15 15 C 1.55159 * 102.94499 * 337.80902 * 14 13 12 16 16 H 1.08997 * 111.00112 * 277.39164 * 15 14 13 17 17 N 1.46490 * 111.00840 * 153.57161 * 15 14 13 18 18 C 1.36935 * 120.00121 * 154.99548 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.47426 * 125.65063 * 179.97438 * 12 10 9 27 27 O 1.33923 * 125.62139 * 269.97830 * 6 5 4 28 28 H 1.09000 * 109.46668 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47379 * 300.00083 * 1 2 3 30 30 H 1.08996 * 109.47028 * 60.00322 * 1 2 3 31 31 H 0.96999 * 120.00209 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.46897 * 60.00260 * 5 4 2 33 33 H 1.08996 * 109.47113 * 299.99865 * 5 4 2 34 34 H 1.08004 * 126.44409 * 359.97438 * 7 6 5 35 35 H 1.08003 * 126.64987 * 180.22154 * 8 7 6 36 36 H 1.08997 * 109.88394 * 59.49733 * 13 12 10 37 37 H 1.08999 * 109.88459 * 298.33292 * 13 12 10 38 38 H 1.08998 * 110.72649 * 219.43940 * 14 13 12 39 39 H 1.09001 * 110.87161 * 96.24058 * 14 13 12 40 40 H 0.97000 * 120.00577 * 335.00148 * 17 15 14 41 41 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 42 42 H 1.09006 * 110.36031 * 85.31734 * 26 12 10 43 43 H 1.08995 * 110.37034 * 323.00155 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1483 -2.5879 0.0013 7 6 4.4098 -3.3311 -1.0965 8 6 4.8588 -4.5838 -0.6499 9 6 4.8407 -4.5436 0.7148 10 6 5.2285 -5.6351 1.6143 11 8 5.6041 -6.6977 1.1551 12 7 5.1691 -5.4614 2.9495 13 6 4.7354 -4.2355 3.6355 14 6 4.8056 -4.5101 5.1525 15 6 4.7338 -6.0581 5.2292 16 1 3.7018 -6.4046 5.1734 17 7 5.3867 -6.5547 6.4429 18 6 5.0197 -7.7631 6.9723 19 1 4.2493 -8.3503 6.4948 20 6 5.6380 -8.2335 8.1227 21 7 6.5766 -7.5176 8.7050 22 14 5.1378 -9.8822 8.8444 23 1 5.9414 -10.1531 10.0636 24 1 3.6962 -9.8503 9.1994 25 1 5.3779 -10.9536 7.8446 26 6 5.5269 -6.4695 3.9639 27 8 4.4092 -3.3219 1.0907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0072 0.0005 32 1 4.0096 -0.6527 0.8895 33 1 4.0089 -0.6539 -0.8905 34 1 4.2977 -3.0188 -2.1243 35 1 5.1583 -5.4186 -1.2663 36 1 3.7119 -3.9930 3.3497 37 1 5.3999 -3.4111 3.3769 38 1 3.9566 -4.0587 5.6659 39 1 5.7446 -4.1465 5.5700 40 1 6.0788 -6.0276 6.8717 41 1 6.8365 -6.6616 8.3300 42 1 6.5984 -6.4435 4.1630 43 1 5.2257 -7.4636 3.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019523213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:03 Heat of formation + Delta-G solvation = -62.553474 kcal Electronic energy + Delta-G solvation = -26352.624173 eV Core-core repulsion = 22398.995536 eV Total energy + Delta-G solvation = -3953.628637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.91358 -41.05934 -40.56352 -38.91443 -36.38989 -36.17051 -34.25274 -33.49905 -32.30287 -31.17884 -30.48573 -29.17472 -27.21562 -25.77640 -24.44332 -23.06432 -22.36867 -21.91045 -21.72885 -20.95104 -19.62004 -18.94245 -18.18005 -17.95332 -17.41522 -17.21916 -16.71498 -16.55488 -16.52750 -15.85022 -15.70982 -15.42110 -14.93837 -14.66691 -14.62949 -14.37569 -14.25480 -14.08950 -13.95535 -13.87697 -13.41537 -13.21249 -13.01103 -12.88214 -12.79214 -12.61120 -12.41180 -11.89489 -11.83689 -11.61075 -11.29300 -11.22796 -11.08342 -11.02367 -10.27263 -10.05120 -9.68227 -9.22895 -8.42829 -5.39778 -0.22230 1.09029 1.29660 1.58807 1.60281 1.67867 1.81210 1.84583 1.94756 2.38370 2.68939 3.14904 3.33677 3.43757 3.56445 3.77976 3.81042 3.90547 3.93541 4.07770 4.19392 4.21380 4.34585 4.38800 4.45592 4.55466 4.56818 4.68188 4.69356 4.72130 4.79472 4.83133 4.99831 5.04025 5.08731 5.19647 5.24575 5.28396 5.56910 5.73802 6.24394 6.45738 6.46530 6.74562 7.02090 7.16585 7.91374 8.01126 9.08551 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.002472 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.406251 B =11323.626753 C =12297.699068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.596 6.596 4 N -0.720 5.720 5 C 0.201 3.799 6 C -0.001 4.001 7 C -0.180 4.180 8 C -0.119 4.119 9 C -0.080 4.080 10 C 0.604 3.396 11 O -0.565 6.565 12 N -0.604 5.604 13 C 0.114 3.886 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.067 0.933 17 N -0.734 5.734 18 C -0.338 4.338 19 H 0.068 0.932 20 C -0.098 4.098 21 N -0.972 5.972 22 Si 1.126 2.874 23 H -0.293 1.293 24 H -0.274 1.274 25 H -0.281 1.281 26 C 0.093 3.907 27 O -0.157 6.157 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.191 0.809 35 H 0.167 0.833 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.365 0.635 41 H 0.246 0.754 42 H 0.052 0.948 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 15.352 -22.083 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.301 3.699 3 O -0.477 6.477 4 N -0.374 5.374 5 C 0.078 3.922 6 C -0.054 4.054 7 C -0.199 4.199 8 C -0.139 4.139 9 C -0.132 4.132 10 C 0.394 3.606 11 O -0.447 6.447 12 N -0.336 5.336 13 C -0.008 4.008 14 C -0.168 4.168 15 C 0.062 3.938 16 H 0.085 0.915 17 N -0.374 5.374 18 C -0.470 4.470 19 H 0.086 0.914 20 C -0.290 4.290 21 N -0.619 5.619 22 Si 0.950 3.050 23 H -0.219 1.219 24 H -0.200 1.200 25 H -0.207 1.207 26 C -0.033 4.033 27 O -0.052 6.052 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.254 0.746 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.208 0.792 35 H 0.184 0.816 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.198 0.802 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.817 14.410 -20.894 27.997 hybrid contribution 0.374 0.472 -1.040 1.202 sum -11.443 14.882 -21.933 28.870 Atomic orbital electron populations 1.21887 0.88129 1.06338 1.06091 1.21521 0.92163 0.82367 0.73887 1.90737 1.71941 1.33034 1.51953 1.46171 1.06083 1.09844 1.75306 1.19686 0.81091 0.86102 1.05310 1.22889 1.03418 0.94847 0.84212 1.21957 1.04496 0.92326 1.01158 1.22233 0.99511 1.00080 0.92102 1.21640 1.11745 0.85310 0.94509 1.16608 0.78027 0.85528 0.80464 1.90859 1.50477 1.27214 1.76111 1.48452 1.63904 1.16850 1.04368 1.22161 1.01403 0.85789 0.91422 1.22896 1.04093 0.95200 0.94638 1.21377 0.94901 0.93441 0.84114 0.91469 1.42431 1.45409 1.21731 1.27854 1.20374 1.19415 0.97539 1.09624 0.91424 1.27172 0.97283 1.08334 0.96191 1.71001 1.33207 1.14511 1.43147 0.82656 0.75804 0.71111 0.75408 1.21885 1.20030 1.20722 1.23061 0.99642 0.91579 0.89021 1.84100 1.64450 1.21406 1.35285 0.87923 0.88147 0.87672 0.74574 0.89883 0.86569 0.79188 0.81576 0.89169 0.89775 0.87999 0.90637 0.80180 0.94326 0.92971 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.39 71.24 0.74 -0.07 16 2 C 0.51 6.59 7.94 87.66 0.70 7.28 16 3 O -0.60 -13.60 17.10 -3.03 -0.05 -13.66 16 4 N -0.72 -6.69 5.55 -466.77 -2.59 -9.28 16 5 C 0.20 2.23 6.20 85.63 0.53 2.77 16 6 C 0.00 -0.02 6.68 24.97 0.17 0.15 16 7 C -0.18 -2.30 10.77 22.07 0.24 -2.06 16 8 C -0.12 -2.31 10.62 22.39 0.24 -2.07 16 9 C -0.08 -1.95 6.95 24.07 0.17 -1.78 16 10 C 0.60 19.69 7.82 86.44 0.68 20.37 16 11 O -0.56 -22.43 17.12 -4.33 -0.07 -22.50 16 12 N -0.60 -19.23 3.33 -816.56 -2.72 -21.94 16 13 C 0.11 2.82 5.54 86.73 0.48 3.30 16 14 C -0.13 -3.66 6.60 31.78 0.21 -3.45 16 15 C 0.17 6.56 3.71 46.38 0.17 6.73 16 16 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 17 N -0.73 -35.56 5.24 -316.42 -1.66 -37.22 16 18 C -0.34 -18.58 9.96 84.03 0.84 -17.74 16 19 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 20 C -0.10 -5.59 5.50 84.86 0.47 -5.13 16 21 N -0.97 -59.71 13.70 21.65 0.30 -59.42 16 22 Si 1.13 51.34 29.92 68.60 2.05 53.39 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.09 3.55 6.60 86.85 0.57 4.13 16 27 O -0.16 -3.08 8.28 -4.94 -0.04 -3.12 16 28 H 0.10 -0.01 7.91 -2.39 -0.02 -0.03 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.42 2.14 8.30 -92.71 -0.77 1.37 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.09 1.89 7.68 -2.39 -0.02 1.87 16 37 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.18 8.00 -2.39 -0.02 2.16 16 40 H 0.37 18.31 6.59 -92.71 -0.61 17.70 16 41 H 0.25 14.96 6.77 -92.71 -0.63 14.33 16 42 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 Total: -1.00 -78.24 368.81 1.22 -77.01 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.19 Total: 24.31 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.19 Total: 12.42 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -6.67 Total: -127.85 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.17 Total: -39.28 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -78.24 1.22 -77.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019523213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds