Wall clock time and date at job start Tue Mar 31 2020 13:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35728 * 117.00152 * 2 1 4 4 C 1.41852 * 126.78566 * 179.97438 * 3 2 1 5 5 C 1.36663 * 103.80892 * 179.97438 * 4 3 2 6 6 C 1.47552 * 126.87829 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99481 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53148 * 109.43103 * 119.96781 * 9 8 6 11 11 C 1.53700 * 108.88002 * 66.17721 * 10 9 8 12 12 H 1.08997 * 112.09789 * 188.25103 * 11 10 9 13 13 C 1.54613 * 107.82916 * 312.23114 * 11 10 9 14 14 C 1.54303 * 104.75369 * 88.66564 * 13 11 10 15 15 C 1.54613 * 104.75053 * 359.97438 * 14 13 11 16 16 H 1.09001 * 112.18707 * 146.79751 * 15 14 13 17 17 C 1.53140 * 109.43648 * 240.14338 * 9 8 6 18 18 N 1.48290 * 104.25922 * 25.14152 * 15 14 13 19 19 C 1.36941 * 128.21217 * 138.42535 * 18 15 14 20 20 H 1.07999 * 120.00221 * 195.29223 * 19 18 15 21 21 C 1.38811 * 119.99793 * 15.29643 * 19 18 15 22 22 N 1.31621 * 119.99993 * 9.24443 * 21 19 18 23 23 Si 1.86804 * 120.00109 * 189.24105 * 21 19 18 24 24 H 1.48504 * 109.46724 * 59.99952 * 23 21 19 25 25 H 1.48496 * 109.47202 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46947 * 300.00126 * 23 21 19 27 27 O 1.34657 * 106.24687 * 0.02562 * 5 4 3 28 28 N 1.20881 * 111.62804 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.47066 * 299.99747 * 1 2 3 30 30 H 1.08995 * 109.47053 * 59.99409 * 1 2 3 31 31 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.07998 * 128.09312 * 0.24920 * 4 3 2 33 33 H 0.96999 * 120.00585 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.43379 * 0.05928 * 9 8 6 35 35 H 1.09001 * 109.56456 * 185.99546 * 10 9 8 36 36 H 1.08998 * 109.56814 * 306.35561 * 10 9 8 37 37 H 1.09005 * 110.37464 * 207.48519 * 13 11 10 38 38 H 1.09000 * 110.38286 * 329.73216 * 13 11 10 39 39 H 1.09004 * 110.37935 * 118.81163 * 14 13 11 40 40 H 1.08992 * 110.38289 * 241.17688 * 14 13 11 41 41 H 1.09005 * 109.56807 * 53.64673 * 17 9 8 42 42 H 1.09006 * 109.56983 * 174.00194 * 17 9 8 43 43 H 0.97003 * 120.00173 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 0.0005 5 6 3.5391 2.8136 -0.0003 6 6 4.7786 3.6141 0.0003 7 8 5.8604 3.0593 0.0012 8 7 4.7115 4.9601 -0.0012 9 6 5.9422 5.7549 -0.0001 10 6 5.9809 6.6360 -1.2521 11 6 4.8491 7.6724 -1.1660 12 1 4.7361 8.2341 -2.0932 13 6 3.5530 6.9264 -0.7734 14 6 3.5517 6.9263 0.7696 15 6 4.8475 7.6716 1.1644 16 1 4.7299 8.2419 2.0859 17 6 5.9783 6.6366 1.2516 18 7 5.1374 8.5423 -0.0004 19 6 5.5697 9.8417 0.0000 20 1 5.5064 10.4322 -0.9021 21 6 6.0893 10.3998 1.1599 22 7 6.3364 9.6372 2.2038 23 14 6.4381 12.2333 1.2392 24 1 5.1789 12.9869 1.0112 25 1 6.9853 12.5757 2.5765 26 1 7.4276 12.5946 0.1926 27 8 2.2759 3.2802 -0.0006 28 7 1.4686 2.3805 -0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.2442 0.7260 -0.0027 33 1 3.8484 5.4028 -0.0023 34 1 6.8045 5.0881 0.0010 35 1 6.9414 7.1482 -1.3084 36 1 5.8425 6.0171 -2.1385 37 1 2.6799 7.4567 -1.1538 38 1 3.5722 5.9055 -1.1548 39 1 2.6779 7.4565 1.1485 40 1 3.5711 5.9047 1.1492 41 1 5.8381 6.0180 2.1381 42 1 6.9388 7.1487 1.3098 43 1 6.6991 10.0273 3.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021233958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:27 Heat of formation + Delta-G solvation = 103.389641 kcal Electronic energy + Delta-G solvation = -28337.047266 eV Core-core repulsion = 24390.614462 eV Total energy + Delta-G solvation = -3946.432804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.13377 -41.14910 -39.13850 -38.52248 -34.40488 -33.37427 -32.42891 -32.03170 -31.05551 -30.32052 -29.06106 -27.95012 -25.12093 -23.86701 -23.44244 -23.35327 -21.56639 -20.70980 -19.87569 -19.62920 -18.67100 -18.10540 -17.11173 -17.05196 -16.27950 -15.81908 -15.68766 -14.96259 -14.75569 -14.57101 -14.27308 -13.90953 -13.70030 -13.23016 -12.98049 -12.84192 -12.54397 -12.28742 -12.19145 -12.16338 -11.70550 -11.62824 -11.59973 -11.00207 -10.93357 -10.68803 -10.46782 -10.37300 -10.15088 -10.07006 -10.00606 -9.69928 -9.57642 -9.53339 -9.41251 -8.68745 -8.36012 -6.87714 -5.81852 -3.17001 0.66186 1.90582 2.39885 2.56503 3.05736 3.36761 3.42557 3.42792 3.51381 3.91416 4.42635 4.56773 4.76627 4.81551 4.91481 5.02177 5.10319 5.14944 5.30253 5.38736 5.48196 5.53384 5.61618 5.71509 5.80096 5.92440 5.95857 6.13019 6.26898 6.37794 6.47926 6.50961 6.55075 6.63424 6.72273 6.84012 6.94382 7.00583 7.43953 7.49404 7.55011 7.69575 7.89505 8.17001 8.18458 9.08111 9.70409 10.47960 11.30653 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003134 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.972518 B = 8932.009160 C = 9237.773103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.203 3.797 4 C -0.161 4.161 5 C -0.048 4.048 6 C 0.582 3.418 7 O -0.524 6.524 8 N -0.714 5.714 9 C 0.140 3.860 10 C -0.138 4.138 11 C 0.149 3.851 12 H 0.070 0.930 13 C -0.162 4.162 14 C -0.174 4.174 15 C 0.182 3.818 16 H 0.113 0.887 17 C -0.124 4.124 18 N -0.582 5.582 19 C -0.226 4.226 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.912 5.912 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 O 0.115 5.885 28 N -0.391 5.391 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.189 0.811 33 H 0.434 0.566 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 -14.969 -4.198 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.006 3.994 4 C -0.184 4.184 5 C -0.114 4.114 6 C 0.364 3.636 7 O -0.401 6.401 8 N -0.387 5.387 9 C 0.037 3.963 10 C -0.179 4.179 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.202 4.202 14 C -0.214 4.214 15 C 0.075 3.925 16 H 0.131 0.869 17 C -0.164 4.164 18 N -0.303 5.303 19 C -0.354 4.354 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.557 5.557 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 O 0.050 5.950 28 N -0.115 5.115 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.207 0.793 33 H 0.296 0.704 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.443 -14.956 -4.040 18.143 hybrid contribution 0.226 0.528 0.087 0.581 sum -9.216 -14.428 -3.953 17.571 Atomic orbital electron populations 1.23100 0.76635 1.04203 1.02531 1.86214 1.22718 1.20438 1.89424 1.21902 0.90679 0.85825 1.01037 1.22159 0.94308 0.95027 1.06927 1.24388 0.87129 0.94016 1.05916 1.16836 0.84736 0.83589 0.78391 1.90832 1.26245 1.71894 1.51135 1.49246 1.14463 1.04583 1.70412 1.21284 0.85736 0.92000 0.97264 1.22528 1.02040 0.97785 0.95537 1.21531 0.91051 0.90636 0.92686 0.91154 1.23272 1.00425 1.00076 0.96422 1.23438 1.02344 1.00481 0.95130 1.21468 0.87780 0.89157 0.94143 0.86946 1.22369 1.03647 0.96782 0.93631 1.45137 1.76640 1.09091 0.99417 1.18934 1.34072 0.85106 0.97296 0.90713 1.24831 0.99887 0.98135 0.97160 1.69840 1.48456 1.33463 1.03988 0.86237 0.77967 0.84955 0.76775 1.21241 1.21660 1.21133 1.84963 1.11952 1.29655 1.68467 1.73997 1.15940 0.96634 1.24951 0.92078 0.92114 0.87540 0.79330 0.70421 0.89405 0.90396 0.93150 0.91754 0.90595 0.91822 0.90709 0.93570 0.89190 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.31 16 2 O -0.28 -3.07 10.57 -18.89 -0.20 -3.27 16 3 C 0.20 2.52 8.00 -16.72 -0.13 2.39 16 4 C -0.16 -1.99 10.97 -38.77 -0.43 -2.42 16 5 C -0.05 -0.65 7.29 -36.35 -0.26 -0.92 16 6 C 0.58 9.02 7.82 -12.47 -0.10 8.92 16 7 O -0.52 -9.40 16.24 5.30 0.09 -9.31 16 8 N -0.71 -11.06 2.77 -54.70 -0.15 -11.21 16 9 C 0.14 2.45 3.15 -67.78 -0.21 2.24 16 10 C -0.14 -2.42 5.49 -26.29 -0.14 -2.56 16 11 C 0.15 2.79 4.32 -65.74 -0.28 2.50 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.16 -2.60 5.75 -25.20 -0.14 -2.75 16 14 C -0.17 -3.00 5.76 -25.20 -0.15 -3.14 16 15 C 0.18 3.87 3.13 -65.82 -0.21 3.66 16 16 H 0.11 2.78 6.36 -51.93 -0.33 2.45 16 17 C -0.12 -2.48 5.39 -26.38 -0.14 -2.62 16 18 N -0.58 -13.29 2.82 -152.87 -0.43 -13.72 16 19 C -0.23 -5.81 10.38 -15.06 -0.16 -5.96 16 20 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 21 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 22 N -0.91 -24.60 10.59 55.49 0.59 -24.01 16 23 Si 0.91 21.00 29.56 -169.99 -5.03 15.98 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 O 0.12 1.54 11.03 15.51 0.17 1.71 16 28 N -0.39 -5.16 11.50 30.47 0.35 -4.81 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.19 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.43 6.38 1.72 -65.47 -0.11 6.27 16 34 H 0.09 1.59 6.89 -51.93 -0.36 1.23 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.09 5.27 -51.93 -0.27 0.82 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.18 5.26 -51.93 -0.27 0.90 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 2.07 7.99 -51.93 -0.41 1.65 16 43 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -28.53 340.99 -6.38 -34.90 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.54 Total: 8.11 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.37 Total: 0.48 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.36 Total: -53.74 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.53 -6.38 -34.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021233958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.295 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds