Wall clock time and date at job start Tue Mar 31 2020 13:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35728 * 117.00152 * 2 1 4 4 C 1.41852 * 126.78566 * 179.97438 * 3 2 1 5 5 C 1.36663 * 103.80892 * 179.97438 * 4 3 2 6 6 C 1.47552 * 126.87829 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99481 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99914 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53148 * 109.43103 * 119.96781 * 9 8 6 11 11 C 1.53700 * 108.88002 * 66.17721 * 10 9 8 12 12 H 1.08997 * 112.09789 * 188.25103 * 11 10 9 13 13 C 1.54613 * 107.82916 * 312.23114 * 11 10 9 14 14 C 1.54303 * 104.75369 * 88.66564 * 13 11 10 15 15 C 1.54613 * 104.75053 * 359.97438 * 14 13 11 16 16 H 1.09001 * 112.18707 * 146.79751 * 15 14 13 17 17 C 1.53140 * 109.43648 * 240.14338 * 9 8 6 18 18 N 1.48290 * 104.25922 * 25.14152 * 15 14 13 19 19 C 1.36941 * 128.21217 * 138.42535 * 18 15 14 20 20 H 1.07999 * 120.00221 * 195.29223 * 19 18 15 21 21 C 1.38811 * 119.99793 * 15.29643 * 19 18 15 22 22 N 1.31621 * 119.99993 * 9.24443 * 21 19 18 23 23 Si 1.86804 * 120.00109 * 189.24105 * 21 19 18 24 24 H 1.48504 * 109.46724 * 59.99952 * 23 21 19 25 25 H 1.48496 * 109.47202 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46947 * 300.00126 * 23 21 19 27 27 O 1.34657 * 106.24687 * 0.02562 * 5 4 3 28 28 N 1.20881 * 111.62804 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.47066 * 299.99747 * 1 2 3 30 30 H 1.08995 * 109.47053 * 59.99409 * 1 2 3 31 31 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.07998 * 128.09312 * 0.24920 * 4 3 2 33 33 H 0.96999 * 120.00585 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.43379 * 0.05928 * 9 8 6 35 35 H 1.09001 * 109.56456 * 185.99546 * 10 9 8 36 36 H 1.08998 * 109.56814 * 306.35561 * 10 9 8 37 37 H 1.09005 * 110.37464 * 207.48519 * 13 11 10 38 38 H 1.09000 * 110.38286 * 329.73216 * 13 11 10 39 39 H 1.09004 * 110.37935 * 118.81163 * 14 13 11 40 40 H 1.08992 * 110.38289 * 241.17688 * 14 13 11 41 41 H 1.09005 * 109.56807 * 53.64673 * 17 9 8 42 42 H 1.09006 * 109.56983 * 174.00194 * 17 9 8 43 43 H 0.97003 * 120.00173 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 0.0005 5 6 3.5391 2.8136 -0.0003 6 6 4.7786 3.6141 0.0003 7 8 5.8604 3.0593 0.0012 8 7 4.7115 4.9601 -0.0012 9 6 5.9422 5.7549 -0.0001 10 6 5.9809 6.6360 -1.2521 11 6 4.8491 7.6724 -1.1660 12 1 4.7361 8.2341 -2.0932 13 6 3.5530 6.9264 -0.7734 14 6 3.5517 6.9263 0.7696 15 6 4.8475 7.6716 1.1644 16 1 4.7299 8.2419 2.0859 17 6 5.9783 6.6366 1.2516 18 7 5.1374 8.5423 -0.0004 19 6 5.5697 9.8417 0.0000 20 1 5.5064 10.4322 -0.9021 21 6 6.0893 10.3998 1.1599 22 7 6.3364 9.6372 2.2038 23 14 6.4381 12.2333 1.2392 24 1 5.1789 12.9869 1.0112 25 1 6.9853 12.5757 2.5765 26 1 7.4276 12.5946 0.1926 27 8 2.2759 3.2802 -0.0006 28 7 1.4686 2.3805 -0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.2442 0.7260 -0.0027 33 1 3.8484 5.4028 -0.0023 34 1 6.8045 5.0881 0.0010 35 1 6.9414 7.1482 -1.3084 36 1 5.8425 6.0171 -2.1385 37 1 2.6799 7.4567 -1.1538 38 1 3.5722 5.9055 -1.1548 39 1 2.6779 7.4565 1.1485 40 1 3.5711 5.9047 1.1492 41 1 5.8381 6.0180 2.1381 42 1 6.9388 7.1487 1.3098 43 1 6.6991 10.0273 3.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021233958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:26 Heat of formation + Delta-G solvation = 85.224630 kcal Electronic energy + Delta-G solvation = -28337.834960 eV Core-core repulsion = 24390.614462 eV Total energy + Delta-G solvation = -3947.220498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.11504 -42.57966 -39.96065 -39.86315 -35.96018 -34.36229 -34.02723 -33.33283 -32.37433 -31.88377 -30.75192 -28.60385 -26.72137 -25.21743 -24.84357 -24.44450 -22.93173 -21.90321 -21.30581 -21.09451 -20.04772 -19.08490 -18.75403 -17.95410 -17.48184 -16.89227 -16.64522 -16.58251 -16.01535 -15.86249 -15.73066 -15.21195 -14.78186 -14.66670 -14.54348 -14.46044 -13.85134 -13.74454 -13.29159 -13.20058 -13.14919 -12.90132 -12.75008 -12.64871 -12.55012 -12.37874 -12.07269 -11.95186 -11.78870 -11.51876 -11.23749 -11.13649 -11.02240 -11.00660 -10.52782 -10.47013 -9.76986 -8.71583 -7.79239 -5.13518 -0.38975 0.95247 1.44726 1.51453 1.52350 1.58306 1.58760 1.86670 2.35908 2.54584 2.97766 3.38523 3.56573 3.63920 3.78611 3.93903 3.98199 4.00354 4.17514 4.26602 4.26971 4.30035 4.30741 4.43211 4.51376 4.59145 4.65720 4.70205 4.82303 4.96037 5.00332 5.03588 5.11380 5.27358 5.32089 5.43285 5.55288 5.59924 5.78590 5.82931 5.86567 6.28328 6.32188 6.85176 6.95844 7.14190 7.80807 8.60409 9.31512 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003134 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.972518 B = 8932.009160 C = 9237.773103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.203 3.797 4 C -0.150 4.150 5 C -0.058 4.058 6 C 0.591 3.409 7 O -0.548 6.548 8 N -0.709 5.709 9 C 0.153 3.847 10 C -0.131 4.131 11 C 0.141 3.859 12 H 0.076 0.924 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.175 3.825 16 H 0.072 0.928 17 C -0.115 4.115 18 N -0.603 5.603 19 C -0.231 4.231 20 H 0.076 0.924 21 C -0.056 4.056 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.281 1.281 27 O 0.114 5.886 28 N -0.397 5.397 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.206 0.794 33 H 0.438 0.562 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -16.765 -5.549 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.006 3.994 4 C -0.173 4.173 5 C -0.124 4.124 6 C 0.375 3.625 7 O -0.427 6.427 8 N -0.382 5.382 9 C 0.049 3.951 10 C -0.171 4.171 11 C 0.034 3.966 12 H 0.094 0.906 13 C -0.190 4.190 14 C -0.204 4.204 15 C 0.068 3.932 16 H 0.090 0.910 17 C -0.155 4.155 18 N -0.324 5.324 19 C -0.360 4.360 20 H 0.094 0.906 21 C -0.250 4.250 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.207 1.207 27 O 0.048 5.952 28 N -0.122 5.122 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.223 0.777 33 H 0.301 0.699 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.187 -16.776 -5.419 20.879 hybrid contribution 0.694 0.990 0.491 1.305 sum -10.493 -15.786 -4.928 19.586 Atomic orbital electron populations 1.23403 0.74792 1.06365 1.02576 1.86232 1.24536 1.19564 1.89106 1.22023 0.90811 0.86152 1.00439 1.22420 0.94866 0.94837 1.05166 1.23942 0.86699 0.94095 1.07666 1.16882 0.85057 0.83247 0.77307 1.90827 1.27515 1.72276 1.52058 1.49041 1.13673 1.04703 1.70779 1.20962 0.86645 0.91614 0.95906 1.22425 1.00570 0.97607 0.96532 1.21780 0.92655 0.90552 0.91630 0.90577 1.23191 0.99345 1.01287 0.95173 1.23324 0.99937 1.00901 0.96272 1.21365 0.90213 0.89175 0.92431 0.91014 1.22159 1.01286 0.96708 0.95319 1.45321 1.76742 1.08961 1.01419 1.19231 1.32953 0.86707 0.97129 0.90619 1.25487 1.00868 1.01367 0.97285 1.70032 1.49708 1.34369 1.04058 0.85332 0.77694 0.81200 0.76096 1.20886 1.22566 1.20743 1.84956 1.11683 1.29745 1.68782 1.73982 1.15944 0.96997 1.25257 0.92101 0.91960 0.84437 0.77745 0.69913 0.89705 0.92427 0.90329 0.90283 0.88127 0.91500 0.88880 0.93289 0.93025 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.73 113.37 1.22 1.49 16 2 O -0.29 -5.50 10.57 -90.51 -0.96 -6.45 16 3 C 0.20 4.52 8.00 85.78 0.69 5.20 16 4 C -0.15 -3.31 10.97 22.80 0.25 -3.06 16 5 C -0.06 -1.42 7.29 24.36 0.18 -1.25 16 6 C 0.59 17.01 7.82 86.70 0.68 17.69 16 7 O -0.55 -18.70 16.24 -3.96 -0.06 -18.76 16 8 N -0.71 -20.45 2.77 -445.24 -1.23 -21.68 16 9 C 0.15 5.21 3.15 45.09 0.14 5.36 16 10 C -0.13 -4.41 5.49 30.88 0.17 -4.24 16 11 C 0.14 5.06 4.32 45.44 0.20 5.26 16 12 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.15 -4.42 5.75 31.59 0.18 -4.24 16 14 C -0.16 -5.44 5.76 31.59 0.18 -5.25 16 15 C 0.18 7.57 3.13 45.38 0.14 7.71 16 16 H 0.07 3.70 6.36 -2.39 -0.02 3.69 16 17 C -0.11 -4.67 5.39 30.82 0.17 -4.51 16 18 N -0.60 -27.74 2.82 -637.56 -1.80 -29.53 16 19 C -0.23 -12.05 10.38 84.03 0.87 -11.18 16 20 H 0.08 3.83 7.85 -2.91 -0.02 3.81 16 21 C -0.06 -2.99 5.42 84.86 0.46 -2.53 16 22 N -0.93 -52.52 10.59 21.65 0.23 -52.30 16 23 Si 0.97 44.16 29.56 68.60 2.03 46.19 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 O 0.11 2.73 11.03 65.68 0.72 3.46 16 28 N -0.40 -9.45 11.50 -172.01 -1.98 -11.43 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.44 11.72 1.72 -115.86 -0.20 11.52 16 34 H 0.08 3.01 6.89 -2.39 -0.02 2.99 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.10 2.51 5.27 -2.39 -0.01 2.49 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.73 5.26 -2.39 -0.01 2.72 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.05 2.49 7.99 -2.38 -0.02 2.47 16 43 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -62.65 340.99 3.33 -59.32 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.85 Total: 24.73 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.52 Total: 6.45 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.78 Total: -114.94 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.30 Total: -21.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.65 3.33 -59.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021233958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.546 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds