Wall clock time and date at job start Tue Mar 31 2020 13:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35685 * 116.99865 * 2 1 4 4 C 1.38737 * 119.58148 * 179.97438 * 3 2 1 5 5 C 1.39727 * 119.07866 * 179.97438 * 4 3 2 6 6 C 1.48169 * 120.86517 * 179.97438 * 5 4 3 7 7 O 1.21517 * 119.99826 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00419 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00409 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.85149 * 336.19446 * 9 8 6 11 11 C 1.53950 * 113.67067 * 107.44037 * 9 8 6 12 12 C 1.53777 * 87.02268 * 139.93342 * 11 9 8 13 13 H 1.08991 * 113.61598 * 89.23095 * 12 11 9 14 14 N 1.46506 * 113.61805 * 220.05338 * 12 11 9 15 15 C 1.36929 * 119.99807 * 254.13523 * 14 12 11 16 16 H 1.08004 * 120.00341 * 0.27647 * 15 14 12 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00365 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00457 * 19 17 15 23 23 C 1.53781 * 113.61628 * 205.00244 * 9 8 6 24 24 C 1.39721 * 118.27231 * 0.25138 * 5 4 3 25 25 C 1.38739 * 119.07990 * 359.50397 * 24 5 4 26 26 O 1.35686 * 119.58739 * 180.26657 * 25 24 5 27 27 C 1.42889 * 117.00289 * 180.23549 * 26 25 24 28 28 N 1.32258 * 119.58254 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47248 * 299.99616 * 1 2 3 30 30 H 1.08998 * 109.47125 * 60.00261 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.46485 * 359.96176 * 4 3 2 33 33 H 0.97003 * 119.99809 * 0.02562 * 8 6 5 34 34 H 1.09005 * 113.60913 * 25.41283 * 11 9 8 35 35 H 1.08995 * 113.67234 * 254.46763 * 11 9 8 36 36 H 0.96999 * 120.00076 * 74.13587 * 14 12 11 37 37 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61683 * 105.46880 * 23 9 8 39 39 H 1.09002 * 113.61578 * 334.57158 * 23 9 8 40 40 H 1.08001 * 120.46176 * 179.74622 * 24 5 4 41 41 H 1.09000 * 109.47268 * 60.00417 * 27 26 25 42 42 H 1.08999 * 109.47866 * 180.02562 * 27 26 25 43 43 H 1.09003 * 109.47457 * 300.00243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2715 0.0005 5 6 4.0543 2.5220 0.0000 6 6 5.5317 2.6349 0.0011 7 8 6.2176 1.6318 0.0020 8 7 6.1147 3.8500 0.0000 9 6 7.5754 3.9616 0.0006 10 1 8.0674 3.0779 0.4072 11 6 8.1601 4.4286 -1.3449 12 6 9.1416 5.2865 -0.5292 13 1 10.0632 4.7664 -0.2679 14 7 9.3803 6.6125 -1.1044 15 6 10.5650 6.8817 -1.7360 16 1 11.3218 6.1151 -1.8141 17 6 10.7909 8.1380 -2.2816 18 7 9.8666 9.0706 -2.1913 19 14 12.4069 8.5050 -3.1439 20 1 13.2710 7.2977 -3.1107 21 1 12.1401 8.8836 -4.5548 22 1 13.0939 9.6251 -2.4521 23 6 8.0922 5.2824 0.5949 24 6 3.2483 3.6633 0.0043 25 6 1.8689 3.5146 -0.0015 26 8 1.0763 4.6160 -0.0029 27 6 -0.3360 4.3990 -0.0038 28 7 1.3165 2.3129 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0199 0.3662 0.0016 33 1 5.5672 4.6507 -0.0011 34 1 7.4627 5.0138 -1.9444 35 1 8.6429 3.6328 -1.9120 36 1 8.6990 7.2998 -1.0379 37 1 10.0245 9.9486 -2.5722 38 1 8.5202 5.1749 1.5915 39 1 7.3762 6.1015 0.5268 40 1 3.6928 4.6475 0.0082 41 1 -0.6177 3.8367 0.8864 42 1 -0.8513 5.3595 -0.0053 43 1 -0.6165 3.8353 -0.8935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022367648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:33 Heat of formation + Delta-G solvation = -31.795934 kcal Electronic energy + Delta-G solvation = -26049.453438 eV Core-core repulsion = 22097.158548 eV Total energy + Delta-G solvation = -3952.294890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40570 -39.91170 -39.27569 -38.14401 -37.12445 -34.24612 -33.20801 -32.33677 -30.84389 -29.86067 -28.31584 -26.94890 -25.31447 -25.15912 -24.02245 -23.63694 -22.05418 -20.72755 -19.76550 -18.80265 -18.29892 -17.19661 -16.92570 -16.77750 -16.65907 -15.97432 -15.91153 -15.82161 -15.23889 -15.00183 -14.58266 -14.54277 -14.06249 -13.96186 -13.51261 -13.08253 -12.94177 -12.68697 -12.47581 -12.20160 -12.00054 -11.99368 -11.94602 -11.28864 -11.05205 -10.95931 -10.75425 -10.52147 -10.50771 -10.34791 -10.18249 -10.07278 -9.91532 -9.64006 -8.94710 -8.83795 -8.57664 -7.00135 -5.81508 -3.10395 0.37603 0.82018 2.45504 2.68940 2.69282 3.11484 3.41650 3.47961 3.49240 3.49829 3.82899 4.44628 4.56678 4.60341 4.71524 4.83695 4.87295 4.88413 4.91374 4.92061 5.02132 5.17634 5.18345 5.22009 5.33550 5.42213 5.45383 5.69260 5.81359 5.83702 5.90126 6.08054 6.22610 6.28131 6.40895 6.43568 6.59082 6.68529 6.94475 7.02570 7.28417 7.47406 7.68508 8.08340 8.36891 9.48485 10.04798 10.39276 11.40887 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.002265 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821687 B =12360.396773 C =13257.864526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.358 3.642 4 C -0.171 4.171 5 C -0.016 4.016 6 C 0.559 3.441 7 O -0.527 6.527 8 N -0.701 5.701 9 C 0.116 3.884 10 H 0.113 0.887 11 C -0.176 4.176 12 C 0.169 3.831 13 H 0.080 0.920 14 N -0.710 5.710 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.158 4.158 24 C -0.197 4.197 25 C 0.359 3.641 26 O -0.300 6.300 27 C 0.040 3.960 28 N -0.583 5.583 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.402 0.598 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 -14.176 6.898 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.180 3.820 4 C -0.192 4.192 5 C -0.026 4.026 6 C 0.344 3.656 7 O -0.404 6.404 8 N -0.351 5.351 9 C 0.012 3.988 10 H 0.131 0.869 11 C -0.218 4.218 12 C 0.056 3.944 13 H 0.098 0.902 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.198 4.198 24 C -0.219 4.219 25 C 0.181 3.819 26 O -0.207 6.207 27 C -0.055 4.055 28 N -0.324 5.324 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.176 0.824 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.168 0.832 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.730 -14.899 6.818 28.020 hybrid contribution 0.461 0.976 -0.565 1.218 sum -22.268 -13.924 6.253 26.997 Atomic orbital electron populations 1.22894 0.76987 1.03252 1.02410 1.86298 1.23068 1.23857 1.87479 1.19165 0.88673 0.83438 0.90742 1.20946 0.91437 0.99271 1.07588 1.19965 0.93979 0.92348 0.96306 1.17952 0.86203 0.84217 0.77219 1.90788 1.64093 1.36167 1.49307 1.45991 1.08523 1.07421 1.73146 1.22649 0.77697 0.99027 0.99458 0.86938 1.24385 1.00626 1.00551 0.96267 1.21345 0.93993 0.88066 0.90988 0.90188 1.42360 1.18416 1.08531 1.65515 1.19356 0.93672 0.96393 1.28031 0.90904 1.24773 0.98242 0.96309 1.01609 1.69664 1.33623 1.04113 1.50642 0.86106 0.83108 0.77848 0.79065 1.20465 1.21856 1.21841 1.23858 1.00109 0.95709 1.00080 1.21053 0.90577 1.00192 1.10036 1.19142 0.88354 0.83792 0.90566 1.86303 1.19561 1.27348 1.87441 1.22893 0.77210 1.03065 1.02353 1.66634 1.41943 0.98591 1.25187 0.92262 0.92229 0.88325 0.82437 0.76252 0.90069 0.92034 0.78072 0.93495 0.91269 0.89831 0.83168 0.92287 0.88264 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.30 16 2 O -0.30 -2.99 10.47 -18.76 -0.20 -3.18 16 3 C 0.36 3.97 7.48 -17.18 -0.13 3.84 16 4 C -0.17 -2.00 9.60 -38.84 -0.37 -2.37 16 5 C -0.02 -0.19 5.90 -104.71 -0.62 -0.80 16 6 C 0.56 7.70 7.80 -12.18 -0.09 7.61 16 7 O -0.53 -8.91 16.04 5.35 0.09 -8.83 16 8 N -0.70 -8.87 5.32 -53.77 -0.29 -9.16 16 9 C 0.12 1.68 4.24 -67.03 -0.28 1.39 16 10 H 0.11 1.68 7.46 -51.93 -0.39 1.29 16 11 C -0.18 -3.00 7.69 -25.83 -0.20 -3.20 16 12 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16 13 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 14 N -0.71 -17.20 5.41 -52.64 -0.28 -17.49 16 15 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C -0.16 -2.38 7.58 -25.92 -0.20 -2.58 16 24 C -0.20 -2.07 9.54 -38.84 -0.37 -2.44 16 25 C 0.36 3.87 7.48 -17.18 -0.13 3.74 16 26 O -0.30 -2.95 10.47 -18.76 -0.20 -3.14 16 27 C 0.04 0.26 10.38 101.05 1.05 1.31 16 28 N -0.58 -6.24 8.02 -13.45 -0.11 -6.35 16 29 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.16 1.83 7.74 -52.48 -0.41 1.42 16 33 H 0.40 4.20 6.86 -40.82 -0.28 3.92 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 9.83 7.91 -40.82 -0.32 9.51 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 40 H 0.15 1.30 6.53 -52.49 -0.34 0.95 16 41 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -32.67 369.63 -6.48 -39.15 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.92 Total: 9.79 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.84 Total: 3.45 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.05 Total: -59.93 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.31 Total: -15.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.67 -6.48 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022367648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.351 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds