Wall clock time and date at job start Tue Mar 31 2020 13:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35685 * 116.99865 * 2 1 4 4 C 1.38737 * 119.58148 * 179.97438 * 3 2 1 5 5 C 1.39727 * 119.07866 * 179.97438 * 4 3 2 6 6 C 1.48169 * 120.86517 * 179.97438 * 5 4 3 7 7 O 1.21517 * 119.99826 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00419 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00409 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.85149 * 336.19446 * 9 8 6 11 11 C 1.53950 * 113.67067 * 107.44037 * 9 8 6 12 12 C 1.53777 * 87.02268 * 139.93342 * 11 9 8 13 13 H 1.08991 * 113.61598 * 89.23095 * 12 11 9 14 14 N 1.46506 * 113.61805 * 220.05338 * 12 11 9 15 15 C 1.36929 * 119.99807 * 254.13523 * 14 12 11 16 16 H 1.08004 * 120.00341 * 0.27647 * 15 14 12 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00365 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00457 * 19 17 15 23 23 C 1.53781 * 113.61628 * 205.00244 * 9 8 6 24 24 C 1.39721 * 118.27231 * 0.25138 * 5 4 3 25 25 C 1.38739 * 119.07990 * 359.50397 * 24 5 4 26 26 O 1.35686 * 119.58739 * 180.26657 * 25 24 5 27 27 C 1.42889 * 117.00289 * 180.23549 * 26 25 24 28 28 N 1.32258 * 119.58254 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47248 * 299.99616 * 1 2 3 30 30 H 1.08998 * 109.47125 * 60.00261 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.46485 * 359.96176 * 4 3 2 33 33 H 0.97003 * 119.99809 * 0.02562 * 8 6 5 34 34 H 1.09005 * 113.60913 * 25.41283 * 11 9 8 35 35 H 1.08995 * 113.67234 * 254.46763 * 11 9 8 36 36 H 0.96999 * 120.00076 * 74.13587 * 14 12 11 37 37 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61683 * 105.46880 * 23 9 8 39 39 H 1.09002 * 113.61578 * 334.57158 * 23 9 8 40 40 H 1.08001 * 120.46176 * 179.74622 * 24 5 4 41 41 H 1.09000 * 109.47268 * 60.00417 * 27 26 25 42 42 H 1.08999 * 109.47866 * 180.02562 * 27 26 25 43 43 H 1.09003 * 109.47457 * 300.00243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4309 1.2715 0.0005 5 6 4.0543 2.5220 0.0000 6 6 5.5317 2.6349 0.0011 7 8 6.2176 1.6318 0.0020 8 7 6.1147 3.8500 0.0000 9 6 7.5754 3.9616 0.0006 10 1 8.0674 3.0779 0.4072 11 6 8.1601 4.4286 -1.3449 12 6 9.1416 5.2865 -0.5292 13 1 10.0632 4.7664 -0.2679 14 7 9.3803 6.6125 -1.1044 15 6 10.5650 6.8817 -1.7360 16 1 11.3218 6.1151 -1.8141 17 6 10.7909 8.1380 -2.2816 18 7 9.8666 9.0706 -2.1913 19 14 12.4069 8.5050 -3.1439 20 1 13.2710 7.2977 -3.1107 21 1 12.1401 8.8836 -4.5548 22 1 13.0939 9.6251 -2.4521 23 6 8.0922 5.2824 0.5949 24 6 3.2483 3.6633 0.0043 25 6 1.8689 3.5146 -0.0015 26 8 1.0763 4.6160 -0.0029 27 6 -0.3360 4.3990 -0.0038 28 7 1.3165 2.3129 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0199 0.3662 0.0016 33 1 5.5672 4.6507 -0.0011 34 1 7.4627 5.0138 -1.9444 35 1 8.6429 3.6328 -1.9120 36 1 8.6990 7.2998 -1.0379 37 1 10.0245 9.9486 -2.5722 38 1 8.5202 5.1749 1.5915 39 1 7.3762 6.1015 0.5268 40 1 3.6928 4.6475 0.0082 41 1 -0.6177 3.8367 0.8864 42 1 -0.8513 5.3595 -0.0053 43 1 -0.6165 3.8353 -0.8935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022367648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:32 Heat of formation + Delta-G solvation = -57.522913 kcal Electronic energy + Delta-G solvation = -26050.569044 eV Core-core repulsion = 22097.158548 eV Total energy + Delta-G solvation = -3953.410496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24535 -41.04374 -39.99156 -39.42753 -37.96831 -35.83199 -34.59136 -33.45926 -31.84277 -31.49718 -28.93782 -27.55376 -26.70790 -26.49548 -25.50110 -24.49870 -23.38153 -21.78765 -20.99178 -19.94001 -19.12253 -19.02271 -17.89548 -17.73143 -17.50738 -16.93434 -16.85085 -16.56309 -16.32536 -16.17521 -15.94678 -15.87165 -15.33138 -14.96741 -14.73821 -14.45700 -14.20335 -13.63852 -13.48106 -13.28464 -13.13882 -12.98577 -12.85298 -12.59907 -12.59115 -12.20696 -12.18724 -12.05799 -11.78582 -11.74763 -11.52552 -11.40989 -11.03326 -11.02712 -10.85361 -10.07066 -9.37447 -8.96716 -7.93822 -5.21390 -0.52905 -0.00921 1.49109 1.49692 1.59435 1.64250 1.67676 1.98975 2.13983 2.58192 2.59455 3.05768 3.38063 3.52965 3.70315 3.75538 3.84380 3.89709 3.99285 4.12160 4.27313 4.33201 4.37658 4.39723 4.40247 4.43167 4.58962 4.71307 4.73651 4.76042 4.89106 4.91563 4.92260 4.98068 5.12377 5.18573 5.33820 5.52468 5.66354 5.72510 6.20641 6.28961 6.40325 6.48060 7.01852 7.35699 8.11724 8.34733 9.29405 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.002265 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821687 B =12360.396773 C =13257.864526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.355 3.645 4 C -0.181 4.181 5 C -0.021 4.021 6 C 0.563 3.437 7 O -0.561 6.561 8 N -0.691 5.691 9 C 0.135 3.865 10 H 0.114 0.886 11 C -0.171 4.171 12 C 0.150 3.850 13 H 0.080 0.920 14 N -0.723 5.723 15 C -0.241 4.241 16 H 0.076 0.924 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.296 1.296 22 H -0.294 1.294 23 C -0.139 4.139 24 C -0.193 4.193 25 C 0.354 3.646 26 O -0.308 6.308 27 C 0.034 3.966 28 N -0.580 5.580 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.414 0.586 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.123 0.877 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.879 -14.706 7.450 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.217 6.217 3 C 0.177 3.823 4 C -0.203 4.203 5 C -0.032 4.032 6 C 0.349 3.651 7 O -0.440 6.440 8 N -0.342 5.342 9 C 0.030 3.970 10 H 0.132 0.868 11 C -0.213 4.213 12 C 0.039 3.961 13 H 0.098 0.902 14 N -0.361 5.361 15 C -0.373 4.373 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.223 1.223 22 H -0.221 1.221 23 C -0.178 4.178 24 C -0.214 4.214 25 C 0.176 3.824 26 O -0.214 6.214 27 C -0.060 4.060 28 N -0.320 5.320 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.170 0.830 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.186 0.814 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.925 -15.470 7.391 29.434 hybrid contribution 0.690 1.051 -0.713 1.445 sum -23.235 -14.419 6.678 28.149 Atomic orbital electron populations 1.23161 0.75148 1.05111 1.02601 1.86296 1.24928 1.23305 1.87221 1.19198 0.88581 0.83961 0.90570 1.20970 0.91963 0.99157 1.08211 1.19738 0.92801 0.93001 0.97617 1.18171 0.86903 0.83777 0.76226 1.90772 1.65029 1.37284 1.50952 1.45830 1.07856 1.07860 1.72609 1.22322 0.78739 0.98739 0.97233 0.86844 1.24216 1.00033 0.99844 0.97190 1.21671 0.95347 0.86080 0.92992 0.90203 1.42506 1.17372 1.10244 1.65986 1.19725 0.94532 0.96251 1.26836 0.90572 1.25528 1.01399 0.96545 1.03347 1.69801 1.35429 1.04276 1.52347 0.85123 0.79742 0.77743 0.77467 1.19135 1.22299 1.22085 1.23671 0.98615 0.96038 0.99502 1.21191 0.90606 1.00461 1.09157 1.19305 0.88713 0.84091 0.90319 1.86302 1.21006 1.26957 1.87164 1.23146 0.75663 1.04688 1.02547 1.66676 1.41818 0.98538 1.24982 0.91950 0.92090 0.85727 0.82960 0.74750 0.90958 0.92531 0.79159 0.94060 0.89542 0.89196 0.81402 0.91961 0.85840 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.38 113.37 1.18 1.56 16 2 O -0.31 -5.87 10.47 -90.03 -0.94 -6.81 16 3 C 0.36 7.57 7.48 84.75 0.63 8.21 16 4 C -0.18 -4.17 9.60 22.75 0.22 -3.96 16 5 C -0.02 -0.49 5.90 -19.92 -0.12 -0.61 16 6 C 0.56 14.97 7.80 86.88 0.68 15.65 16 7 O -0.56 -18.76 16.04 -3.77 -0.06 -18.82 16 8 N -0.69 -16.36 5.32 -442.33 -2.35 -18.71 16 9 C 0.13 3.68 4.24 45.58 0.19 3.88 16 10 H 0.11 3.20 7.46 -2.38 -0.02 3.18 16 11 C -0.17 -5.69 7.69 31.18 0.24 -5.45 16 12 C 0.15 5.54 4.47 45.52 0.20 5.74 16 13 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 14 N -0.72 -34.98 5.41 -320.45 -1.73 -36.71 16 15 C -0.24 -13.13 9.97 84.04 0.84 -12.29 16 16 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 18 N -0.97 -58.13 13.06 21.65 0.28 -57.84 16 19 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C -0.14 -3.93 7.58 31.12 0.24 -3.69 16 24 C -0.19 -3.74 9.54 22.75 0.22 -3.53 16 25 C 0.35 7.07 7.48 84.75 0.63 7.71 16 26 O -0.31 -5.46 10.47 -90.05 -0.94 -6.40 16 27 C 0.03 0.38 10.38 113.37 1.18 1.55 16 28 N -0.58 -11.63 8.02 -422.18 -3.39 -15.02 16 29 H 0.06 0.66 8.10 -2.38 -0.02 0.64 16 30 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.15 3.59 7.74 -2.91 -0.02 3.57 16 33 H 0.41 7.78 6.86 -92.71 -0.64 7.15 16 34 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.38 19.31 7.91 -92.71 -0.73 18.58 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 40 H 0.17 2.53 6.53 -2.91 -0.02 2.51 16 41 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 42 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 Total: -1.00 -69.77 369.63 -0.63 -70.40 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.31 Total: 31.20 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.79 Total: 10.93 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -7.19 Total: -128.29 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.95 Total: -32.03 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.77 -0.63 -70.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022367648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.878 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds