Wall clock time and date at job start Tue Mar 31 2020 13:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35730 * 116.99855 * 2 1 4 4 C 1.41854 * 126.78615 * 180.29930 * 3 2 1 5 5 C 1.36669 * 103.81299 * 180.11789 * 4 3 2 6 6 C 1.47539 * 126.87937 * 179.87484 * 5 4 3 7 7 O 1.21579 * 120.00470 * 359.71424 * 6 5 4 8 8 N 1.34779 * 119.99606 * 179.71186 * 6 5 4 9 9 C 1.46901 * 125.61963 * 359.97386 * 8 6 5 10 10 C 1.54217 * 107.63439 * 178.51679 * 9 8 6 11 11 H 1.08998 * 113.72979 * 215.27962 * 10 9 8 12 12 C 1.54979 * 108.03054 * 87.01203 * 10 9 8 13 13 C 1.54132 * 104.56695 * 214.53821 * 12 10 9 14 14 C 1.53872 * 106.53977 * 24.51247 * 13 12 10 15 15 H 1.09000 * 109.91779 * 238.93636 * 14 13 12 16 16 N 1.46502 * 109.92063 * 117.82543 * 14 13 12 17 17 C 1.36936 * 119.99628 * 86.45577 * 16 14 13 18 18 H 1.08004 * 120.00231 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99824 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99712 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 60.00172 * 21 19 17 23 23 H 1.48501 * 109.46877 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47357 * 299.99436 * 21 19 17 25 25 C 1.53714 * 107.02923 * 358.28007 * 14 13 12 26 26 H 1.08997 * 112.96845 * 214.88141 * 25 14 13 27 27 C 1.47345 * 125.61683 * 180.02562 * 8 6 5 28 28 O 1.34661 * 106.23785 * 359.61744 * 5 4 3 29 29 N 1.20870 * 111.63506 * 0.26082 * 28 5 4 30 30 H 1.08996 * 109.47076 * 300.00017 * 1 2 3 31 31 H 1.08999 * 109.46730 * 59.99819 * 1 2 3 32 32 H 1.08999 * 109.46508 * 180.02562 * 1 2 3 33 33 H 1.07997 * 128.09790 * 359.97438 * 4 3 2 34 34 H 1.09006 * 109.82348 * 58.99502 * 9 8 6 35 35 H 1.08999 * 109.89737 * 298.08440 * 9 8 6 36 36 H 1.08998 * 110.44543 * 95.76032 * 12 10 9 37 37 H 1.09003 * 110.42209 * 333.29701 * 12 10 9 38 38 H 1.09002 * 110.05258 * 265.22682 * 13 12 10 39 39 H 1.09000 * 110.04775 * 143.79498 * 13 12 10 40 40 H 0.96999 * 120.00502 * 266.45224 * 16 14 13 41 41 H 0.97001 * 119.99605 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.30063 * 84.93590 * 27 8 6 43 43 H 1.09005 * 110.29785 * 322.80089 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0059 5 6 3.5391 2.8138 -0.0004 6 6 4.7785 3.6142 -0.0005 7 8 5.8604 3.0596 -0.0007 8 7 4.7113 4.9603 -0.0005 9 6 3.4760 5.7553 -0.0009 10 6 3.8781 7.2436 0.0374 11 1 3.1980 7.8670 0.6177 12 6 4.0985 7.7186 -1.4213 13 6 5.2485 8.7405 -1.3266 14 6 6.0448 8.3877 -0.0582 15 1 6.0538 9.2384 0.6233 16 7 7.4171 8.0205 -0.4163 17 6 8.3736 8.9917 -0.5472 18 1 8.1162 10.0283 -0.3870 19 6 9.6741 8.6438 -0.8861 20 7 9.9878 7.3805 -1.0809 21 14 10.9790 9.9685 -1.0640 22 1 11.1257 10.6949 0.2228 23 1 12.2748 9.3411 -1.4281 24 1 10.5742 10.9223 -2.1277 25 6 5.3344 7.1952 0.6022 26 1 5.3752 7.2255 1.6909 27 6 5.8648 5.8771 -0.0011 28 8 2.2758 3.2802 -0.0007 29 7 1.4686 2.3806 -0.0004 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 4.2442 0.7263 -0.0110 34 1 2.8789 5.5111 0.8778 35 1 2.9032 5.5503 -0.9053 36 1 3.1973 8.1952 -1.8068 37 1 4.3867 6.8798 -2.0550 38 1 4.8456 9.7502 -1.2462 39 1 5.8902 8.6633 -2.2043 40 1 7.6482 7.0896 -0.5606 41 1 10.8966 7.1374 -1.3173 42 1 6.2165 6.0417 -1.0196 43 1 6.6679 5.4748 0.6166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026246846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:58 Heat of formation + Delta-G solvation = 24.571643 kcal Electronic energy + Delta-G solvation = -27398.599033 eV Core-core repulsion = 23448.748425 eV Total energy + Delta-G solvation = -3949.850609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.21553 -40.52271 -39.20085 -38.59234 -35.27110 -33.51136 -33.30887 -32.09810 -30.99904 -29.29436 -28.46187 -28.00816 -25.79127 -24.50787 -23.61580 -23.30112 -22.40828 -20.60185 -19.78579 -18.92925 -18.34387 -18.20326 -17.25849 -17.13607 -16.44287 -15.97518 -15.88692 -15.64970 -15.03429 -14.91299 -14.71300 -14.03097 -13.92037 -13.53747 -13.19691 -12.97871 -12.62228 -12.59923 -12.53363 -12.33340 -12.25368 -11.72041 -11.59084 -11.29976 -10.82013 -10.71227 -10.63625 -10.52487 -10.33085 -10.25535 -10.13474 -10.08731 -9.84821 -9.64129 -9.61588 -8.90483 -8.62206 -6.97240 -5.76256 -3.06190 0.56549 1.82676 2.33449 2.36589 2.90689 3.11515 3.44384 3.49044 3.50331 3.80319 4.34305 4.49477 4.54620 4.59233 4.70463 4.75429 4.77248 4.93458 4.96384 5.08328 5.37717 5.41064 5.44478 5.48151 5.51045 5.60223 5.73670 5.86897 5.93757 5.94232 6.01327 6.16814 6.29561 6.38637 6.46762 6.50630 6.57220 6.63516 6.78552 7.08563 7.35405 7.70169 7.71134 7.94458 8.41935 9.52755 10.09072 10.42317 11.45891 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002824 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.602954 B = 9912.077315 C =10755.516866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.204 3.796 4 C -0.158 4.158 5 C -0.045 4.045 6 C 0.611 3.389 7 O -0.504 6.504 8 N -0.598 5.598 9 C 0.100 3.900 10 C -0.100 4.100 11 H 0.106 0.894 12 C -0.116 4.116 13 C -0.146 4.146 14 C 0.183 3.817 15 H 0.055 0.945 16 N -0.725 5.725 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.105 4.105 26 H 0.091 0.909 27 C 0.117 3.883 28 O 0.118 5.882 29 N -0.394 5.394 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.191 0.809 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.090 0.910 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -9.206 2.713 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.187 6.187 3 C 0.007 3.993 4 C -0.181 4.181 5 C -0.111 4.111 6 C 0.395 3.605 7 O -0.379 6.379 8 N -0.331 5.331 9 C -0.023 4.023 10 C -0.119 4.119 11 H 0.124 0.876 12 C -0.154 4.154 13 C -0.187 4.187 14 C 0.072 3.928 15 H 0.073 0.927 16 N -0.368 5.368 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.125 4.125 26 H 0.109 0.891 27 C -0.004 4.004 28 O 0.053 5.947 29 N -0.118 5.118 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.208 0.792 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.399 -9.347 2.694 23.506 hybrid contribution 1.122 -0.051 -0.230 1.147 sum -20.277 -9.397 2.464 22.484 Atomic orbital electron populations 1.23101 0.76599 1.04263 1.02462 1.86225 1.22741 1.20402 1.89364 1.21875 0.90626 0.85818 1.00947 1.22180 0.94446 0.94951 1.06536 1.24122 0.86925 0.93732 1.06336 1.16045 0.85087 0.80689 0.78672 1.90935 1.26356 1.70287 1.50334 1.48419 1.10049 1.04068 1.70539 1.22199 0.86199 0.91677 1.02182 1.23199 0.97158 0.93531 0.98053 0.87597 1.22447 0.98755 0.99519 0.94654 1.22988 0.96613 0.97250 1.01814 1.20672 0.85619 0.93543 0.92950 0.92717 1.42687 1.03432 1.07546 1.83156 1.19183 0.89160 0.89084 1.39992 0.91192 1.24751 0.97467 0.96091 1.02468 1.69643 1.19243 1.14986 1.53976 0.86289 0.81344 0.80836 0.77807 1.21302 1.21747 1.21314 1.23241 0.93988 0.95261 1.00037 0.89091 1.22341 0.87546 0.87436 1.03107 1.85015 1.11886 1.29430 1.68410 1.73976 1.16103 0.96725 1.25020 0.92129 0.92111 0.87490 0.79198 0.91105 0.90742 0.92197 0.91728 0.92945 0.90712 0.77793 0.93350 0.89234 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.91 10.57 -18.90 -0.20 -3.11 16 3 C 0.20 2.40 8.00 -16.72 -0.13 2.27 16 4 C -0.16 -1.88 10.97 -38.77 -0.43 -2.31 16 5 C -0.04 -0.58 7.08 -36.36 -0.26 -0.84 16 6 C 0.61 9.33 7.85 -12.47 -0.10 9.24 16 7 O -0.50 -9.41 17.16 5.30 0.09 -9.32 16 8 N -0.60 -8.58 3.32 -172.32 -0.57 -9.15 16 9 C 0.10 1.13 4.81 -3.19 -0.02 1.11 16 10 C -0.10 -1.16 4.25 -87.19 -0.37 -1.53 16 11 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.12 -1.48 5.59 -25.10 -0.14 -1.62 16 13 C -0.15 -2.34 6.56 -25.69 -0.17 -2.51 16 14 C 0.18 3.30 3.22 -67.10 -0.22 3.09 16 15 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 16 N -0.73 -17.10 4.80 -52.62 -0.25 -17.36 16 17 C -0.24 -6.49 9.95 -15.06 -0.15 -6.64 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.11 -1.56 4.03 -87.78 -0.35 -1.92 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 27 C 0.12 1.94 4.40 -2.87 -0.01 1.93 16 28 O 0.12 1.42 8.99 15.50 0.14 1.56 16 29 N -0.39 -4.77 11.50 30.47 0.35 -4.42 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 35 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.89 7.28 -51.93 -0.38 0.52 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 40 H 0.39 9.68 5.36 -40.82 -0.22 9.46 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.69 6.31 -51.93 -0.33 1.36 16 43 H 0.09 1.63 8.02 -51.93 -0.42 1.22 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -31.50 352.60 -6.67 -38.17 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.89 Total: 7.15 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.35 Total: 1.14 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.25 Total: -57.97 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.03 Total: -10.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.50 -6.67 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026246846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.746 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds