Wall clock time and date at job start Tue Mar 31 2020 13:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35730 * 116.99855 * 2 1 4 4 C 1.41854 * 126.78615 * 180.29930 * 3 2 1 5 5 C 1.36669 * 103.81299 * 180.11789 * 4 3 2 6 6 C 1.47539 * 126.87937 * 179.87484 * 5 4 3 7 7 O 1.21579 * 120.00470 * 359.71424 * 6 5 4 8 8 N 1.34779 * 119.99606 * 179.71186 * 6 5 4 9 9 C 1.46901 * 125.61963 * 359.97386 * 8 6 5 10 10 C 1.54217 * 107.63439 * 178.51679 * 9 8 6 11 11 H 1.08998 * 113.72979 * 215.27962 * 10 9 8 12 12 C 1.54979 * 108.03054 * 87.01203 * 10 9 8 13 13 C 1.54132 * 104.56695 * 214.53821 * 12 10 9 14 14 C 1.53872 * 106.53977 * 24.51247 * 13 12 10 15 15 H 1.09000 * 109.91779 * 238.93636 * 14 13 12 16 16 N 1.46502 * 109.92063 * 117.82543 * 14 13 12 17 17 C 1.36936 * 119.99628 * 86.45577 * 16 14 13 18 18 H 1.08004 * 120.00231 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99824 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99712 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 60.00172 * 21 19 17 23 23 H 1.48501 * 109.46877 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47357 * 299.99436 * 21 19 17 25 25 C 1.53714 * 107.02923 * 358.28007 * 14 13 12 26 26 H 1.08997 * 112.96845 * 214.88141 * 25 14 13 27 27 C 1.47345 * 125.61683 * 180.02562 * 8 6 5 28 28 O 1.34661 * 106.23785 * 359.61744 * 5 4 3 29 29 N 1.20870 * 111.63506 * 0.26082 * 28 5 4 30 30 H 1.08996 * 109.47076 * 300.00017 * 1 2 3 31 31 H 1.08999 * 109.46730 * 59.99819 * 1 2 3 32 32 H 1.08999 * 109.46508 * 180.02562 * 1 2 3 33 33 H 1.07997 * 128.09790 * 359.97438 * 4 3 2 34 34 H 1.09006 * 109.82348 * 58.99502 * 9 8 6 35 35 H 1.08999 * 109.89737 * 298.08440 * 9 8 6 36 36 H 1.08998 * 110.44543 * 95.76032 * 12 10 9 37 37 H 1.09003 * 110.42209 * 333.29701 * 12 10 9 38 38 H 1.09002 * 110.05258 * 265.22682 * 13 12 10 39 39 H 1.09000 * 110.04775 * 143.79498 * 13 12 10 40 40 H 0.96999 * 120.00502 * 266.45224 * 16 14 13 41 41 H 0.97001 * 119.99605 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.30063 * 84.93590 * 27 8 6 43 43 H 1.09005 * 110.29785 * 322.80089 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0059 5 6 3.5391 2.8138 -0.0004 6 6 4.7785 3.6142 -0.0005 7 8 5.8604 3.0596 -0.0007 8 7 4.7113 4.9603 -0.0005 9 6 3.4760 5.7553 -0.0009 10 6 3.8781 7.2436 0.0374 11 1 3.1980 7.8670 0.6177 12 6 4.0985 7.7186 -1.4213 13 6 5.2485 8.7405 -1.3266 14 6 6.0448 8.3877 -0.0582 15 1 6.0538 9.2384 0.6233 16 7 7.4171 8.0205 -0.4163 17 6 8.3736 8.9917 -0.5472 18 1 8.1162 10.0283 -0.3870 19 6 9.6741 8.6438 -0.8861 20 7 9.9878 7.3805 -1.0809 21 14 10.9790 9.9685 -1.0640 22 1 11.1257 10.6949 0.2228 23 1 12.2748 9.3411 -1.4281 24 1 10.5742 10.9223 -2.1277 25 6 5.3344 7.1952 0.6022 26 1 5.3752 7.2255 1.6909 27 6 5.8648 5.8771 -0.0011 28 8 2.2758 3.2802 -0.0007 29 7 1.4686 2.3806 -0.0004 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 4.2442 0.7263 -0.0110 34 1 2.8789 5.5111 0.8778 35 1 2.9032 5.5503 -0.9053 36 1 3.1973 8.1952 -1.8068 37 1 4.3867 6.8798 -2.0550 38 1 4.8456 9.7502 -1.2462 39 1 5.8902 8.6633 -2.2043 40 1 7.6482 7.0896 -0.5606 41 1 10.8966 7.1374 -1.3173 42 1 6.2165 6.0417 -1.0196 43 1 6.6679 5.4748 0.6166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026246846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:58 Heat of formation + Delta-G solvation = 1.686318 kcal Electronic energy + Delta-G solvation = -27399.591416 eV Core-core repulsion = 23448.748425 eV Total energy + Delta-G solvation = -3950.842991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.14992 -41.73078 -39.97468 -39.86206 -36.74479 -35.01662 -34.38477 -33.11205 -32.70318 -30.55749 -29.87117 -28.61443 -27.18149 -25.78349 -25.06739 -24.54245 -23.46263 -21.58238 -20.95653 -20.30234 -19.59540 -19.15028 -18.95170 -18.00915 -17.54546 -17.28386 -16.80342 -16.63421 -16.56556 -16.08096 -15.79731 -15.60582 -15.10047 -14.86355 -14.46923 -14.34569 -13.99979 -13.74293 -13.62109 -13.24424 -13.17735 -12.96993 -12.91461 -12.61494 -12.56130 -12.37326 -12.17585 -11.86841 -11.63852 -11.58404 -11.46762 -11.43153 -11.17671 -11.08307 -10.86907 -10.48608 -9.82842 -8.94533 -7.89925 -5.17936 -0.45651 0.90372 1.25986 1.48601 1.51192 1.53851 1.57231 1.75196 2.07741 2.59093 2.90321 3.28769 3.43133 3.46987 3.58283 3.68183 3.81695 3.94925 4.22663 4.24027 4.25749 4.28228 4.33110 4.40614 4.46932 4.53636 4.63782 4.64462 4.69874 4.78091 4.81054 4.92231 5.09274 5.11769 5.16822 5.30609 5.36596 5.53927 5.57073 5.70625 5.81112 6.20702 6.32592 6.62565 6.88405 7.38231 8.17188 8.36770 9.33378 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002824 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.602954 B = 9912.077315 C =10755.516866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.205 3.795 4 C -0.154 4.154 5 C -0.050 4.050 6 C 0.611 3.389 7 O -0.550 6.550 8 N -0.595 5.595 9 C 0.096 3.904 10 C -0.079 4.079 11 H 0.147 0.853 12 C -0.109 4.109 13 C -0.140 4.140 14 C 0.172 3.828 15 H 0.056 0.944 16 N -0.740 5.740 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.970 3.030 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.278 1.278 25 C -0.100 4.100 26 H 0.103 0.897 27 C 0.125 3.875 28 O 0.126 5.874 29 N -0.394 5.394 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.200 0.800 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.060 0.940 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.464 -8.497 3.360 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.196 6.196 3 C 0.008 3.992 4 C -0.177 4.177 5 C -0.116 4.116 6 C 0.397 3.603 7 O -0.428 6.428 8 N -0.326 5.326 9 C -0.025 4.025 10 C -0.097 4.097 11 H 0.165 0.835 12 C -0.147 4.147 13 C -0.180 4.180 14 C 0.064 3.936 15 H 0.074 0.926 16 N -0.382 5.382 17 C -0.366 4.366 18 H 0.096 0.904 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.228 1.228 24 H -0.204 1.204 25 C -0.120 4.120 26 H 0.121 0.879 27 C 0.002 3.998 28 O 0.060 5.940 29 N -0.118 5.118 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.217 0.783 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.969 -8.594 3.354 26.618 hybrid contribution 2.061 -0.296 -0.428 2.126 sum -22.907 -8.890 2.926 24.745 Atomic orbital electron populations 1.23414 0.74631 1.06390 1.02666 1.86240 1.24689 1.19598 1.89067 1.21922 0.90525 0.86226 1.00514 1.22393 0.95145 0.94855 1.05282 1.23566 0.86529 0.93607 1.07939 1.16275 0.85366 0.80880 0.77813 1.90908 1.28279 1.71217 1.52443 1.48449 1.10505 1.03909 1.69783 1.22468 0.84946 0.90847 1.04210 1.23275 0.95123 0.94332 0.97005 0.83549 1.22412 0.98523 0.98157 0.95616 1.22794 0.96973 0.99477 0.98743 1.20996 0.83526 0.94953 0.94166 0.92600 1.42933 1.05429 1.06515 1.83306 1.19619 0.89731 0.90006 1.37243 0.90357 1.25540 0.99818 0.97932 1.03891 1.69823 1.18990 1.17015 1.56527 0.85261 0.78325 0.78412 0.78072 1.20372 1.22790 1.20442 1.23158 0.96085 0.92385 1.00393 0.87920 1.21989 0.87919 0.89017 1.00847 1.85005 1.11240 1.29342 1.68461 1.73948 1.15901 0.96923 1.25072 0.91835 0.91926 0.84538 0.78259 0.88560 0.89155 0.88862 0.93346 0.91024 0.94449 0.79167 0.94290 0.92163 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.73 113.37 1.22 1.47 16 2 O -0.29 -5.41 10.57 -90.53 -0.96 -6.37 16 3 C 0.21 4.44 8.00 85.78 0.69 5.13 16 4 C -0.15 -3.51 10.97 22.80 0.25 -3.26 16 5 C -0.05 -1.24 7.08 24.36 0.17 -1.07 16 6 C 0.61 18.85 7.85 86.70 0.68 19.53 16 7 O -0.55 -21.55 17.16 -3.96 -0.07 -21.62 16 8 N -0.60 -16.84 3.32 -817.36 -2.72 -19.55 16 9 C 0.10 1.87 4.81 86.72 0.42 2.29 16 10 C -0.08 -1.52 4.25 -8.57 -0.04 -1.56 16 11 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.11 -2.50 5.59 31.65 0.18 -2.32 16 13 C -0.14 -4.32 6.56 31.27 0.21 -4.11 16 14 C 0.17 6.14 3.22 45.53 0.15 6.29 16 15 H 0.06 1.98 8.09 -2.39 -0.02 1.96 16 16 N -0.74 -36.04 4.80 -320.39 -1.54 -37.58 16 17 C -0.23 -12.73 9.95 84.04 0.84 -11.89 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 20 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 21 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 C -0.10 -2.87 4.03 -8.96 -0.04 -2.90 16 26 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 27 C 0.12 4.30 4.40 86.68 0.38 4.69 16 28 O 0.13 2.73 8.99 65.66 0.59 3.32 16 29 N -0.39 -8.62 11.50 -172.00 -1.98 -10.60 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.10 1.48 7.69 -2.38 -0.02 1.46 16 35 H 0.09 1.55 7.53 -2.39 -0.02 1.54 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.28 7.28 -2.39 -0.02 1.26 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.43 7.91 -2.39 -0.02 1.41 16 40 H 0.37 19.89 5.36 -92.71 -0.50 19.40 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.06 2.44 6.31 -2.39 -0.02 2.42 16 43 H 0.05 2.20 8.02 -2.38 -0.02 2.18 16 Total: -1.00 -72.03 352.60 1.75 -70.28 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.54 Total: 25.88 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.56 Total: 8.14 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.95 Total: -128.10 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.43 Total: -24.67 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.03 1.75 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026246846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.966 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds