Wall clock time and date at job start Tue Mar 31 2020 13:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35354 * 116.99890 * 2 1 4 4 N 1.30554 * 125.44587 * 180.29628 * 3 2 1 5 5 C 1.36321 * 108.38329 * 180.16268 * 4 3 2 6 6 C 1.47376 * 126.41148 * 179.82300 * 5 4 3 7 7 O 1.21621 * 119.99841 * 179.68783 * 6 5 4 8 8 N 1.34772 * 120.00090 * 359.69460 * 6 5 4 9 9 C 1.46914 * 125.61575 * 359.95514 * 8 6 5 10 10 C 1.54212 * 107.63029 * 178.51628 * 9 8 6 11 11 H 1.08999 * 113.72192 * 215.27593 * 10 9 8 12 12 C 1.54979 * 108.03412 * 87.01397 * 10 9 8 13 13 C 1.54132 * 104.56695 * 214.53452 * 12 10 9 14 14 C 1.53872 * 106.53977 * 24.51247 * 13 12 10 15 15 H 1.09005 * 109.92116 * 238.93345 * 14 13 12 16 16 N 1.46502 * 109.92063 * 117.82543 * 14 13 12 17 17 C 1.36932 * 120.00013 * 86.45622 * 16 14 13 18 18 H 1.07994 * 119.99916 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99854 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47283 * 89.99658 * 21 19 17 23 23 H 1.48502 * 109.47177 * 209.99964 * 21 19 17 24 24 H 1.48503 * 109.46633 * 329.99545 * 21 19 17 25 25 C 1.53709 * 107.02848 * 358.27680 * 14 13 12 26 26 H 1.09002 * 112.96790 * 214.07982 * 25 14 13 27 27 C 1.47339 * 125.62068 * 179.97438 * 8 6 5 28 28 C 1.35912 * 107.17664 * 359.56411 * 5 4 3 29 29 O 1.34201 * 125.44995 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46882 * 59.99811 * 1 2 3 31 31 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46836 * 300.00354 * 1 2 3 33 33 H 1.08995 * 109.81980 * 298.04075 * 9 8 6 34 34 H 1.08998 * 109.82302 * 58.90662 * 9 8 6 35 35 H 1.08998 * 110.44543 * 95.75663 * 12 10 9 36 36 H 1.09003 * 110.42209 * 333.29333 * 12 10 9 37 37 H 1.09002 * 110.05258 * 265.22682 * 13 12 10 38 38 H 1.09000 * 110.04775 * 143.79498 * 13 12 10 39 39 H 0.97001 * 119.99674 * 266.45195 * 16 14 13 40 40 H 0.96996 * 119.99955 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.29853 * 84.94294 * 27 8 6 42 42 H 1.09002 * 110.37718 * 322.84937 * 27 8 6 43 43 H 1.07999 * 126.46061 * 180.29065 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3349 1.3978 -0.0055 5 6 3.5701 2.7406 0.0002 6 6 4.8893 3.3976 0.0007 7 8 4.9641 4.6115 0.0004 8 7 6.0129 2.6532 0.0012 9 6 6.0665 1.1850 0.0024 10 6 7.5517 0.7719 -0.0354 11 1 7.7410 -0.1315 -0.6152 12 6 8.0725 0.7198 1.4233 13 6 9.5381 1.1876 1.3287 14 6 9.6410 2.0519 0.0598 15 1 10.3774 1.6254 -0.6214 16 7 10.0252 3.4197 0.4173 17 6 11.3483 3.7471 0.5482 18 1 12.1086 2.9970 0.3884 19 6 11.7123 5.0432 0.8864 20 7 10.7857 5.9576 1.0807 21 14 13.5173 5.4902 1.0644 22 1 14.0452 5.9487 -0.2455 23 1 13.6615 6.5783 2.0646 24 1 14.2800 4.2986 1.5159 25 6 8.2530 2.0487 -0.6007 26 1 8.2999 2.0819 -1.6892 27 6 7.3897 3.1777 0.0011 28 6 2.3604 3.3600 -0.0004 29 8 1.4228 2.3958 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 5.5983 0.7989 0.9077 34 1 5.5507 0.7956 -0.8753 35 1 8.0226 -0.2983 1.8094 36 1 7.4980 1.3959 2.0567 37 1 10.2010 0.3260 1.2488 38 1 9.7989 1.7793 2.2061 39 1 9.3422 4.0933 0.5611 40 1 11.0400 6.8632 1.3174 41 1 7.7109 3.3971 1.0194 42 1 7.4546 4.0736 -0.6164 43 1 2.1850 4.4257 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:11 Heat of formation + Delta-G solvation = -11.534970 kcal Electronic energy + Delta-G solvation = -27437.411910 eV Core-core repulsion = 23485.995601 eV Total energy + Delta-G solvation = -3951.416309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.68660 -40.30609 -39.18999 -38.30431 -35.29244 -34.86572 -33.17282 -30.89445 -30.45021 -29.13325 -28.28275 -27.83983 -25.71087 -24.47207 -23.27466 -22.78523 -22.35204 -20.22046 -19.61842 -18.77990 -18.41785 -17.80366 -17.41404 -17.09713 -16.67388 -15.89631 -15.63519 -15.46849 -15.20930 -14.89053 -14.59950 -13.90386 -13.74217 -13.34656 -13.04363 -12.84073 -12.74855 -12.47806 -12.38074 -12.33381 -12.13773 -11.50283 -11.27634 -11.21976 -10.99526 -10.75185 -10.62041 -10.44375 -10.33758 -10.19064 -10.08185 -9.96965 -9.72939 -9.55233 -8.97526 -8.85107 -8.32013 -6.90730 -5.71112 -3.00619 0.92497 1.62044 1.87280 2.45384 3.07955 3.32300 3.47209 3.52174 3.54091 4.20968 4.43657 4.52210 4.59902 4.65541 4.69484 4.80189 4.91871 4.99771 5.11618 5.25889 5.46274 5.58411 5.63404 5.65637 5.69803 5.79674 5.87170 6.03677 6.08860 6.11954 6.19207 6.31934 6.35757 6.45327 6.57261 6.59006 6.62565 6.75201 6.87403 7.17092 7.26836 7.69263 7.75991 8.23069 8.47296 9.57944 10.15545 10.49041 11.51214 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002907 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.998117 B = 9631.030089 C =10497.991896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.374 3.626 4 N -0.448 5.448 5 C -0.036 4.036 6 C 0.609 3.391 7 O -0.532 6.532 8 N -0.595 5.595 9 C 0.118 3.882 10 C -0.104 4.104 11 H 0.102 0.898 12 C -0.114 4.114 13 C -0.145 4.145 14 C 0.183 3.817 15 H 0.053 0.947 16 N -0.726 5.726 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.105 4.105 26 H 0.088 0.912 27 C 0.116 3.884 28 C -0.001 4.001 29 O -0.227 6.227 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 -13.787 -2.714 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.153 6.153 3 C 0.128 3.872 4 N -0.194 5.194 5 C -0.155 4.155 6 C 0.395 3.605 7 O -0.410 6.410 8 N -0.327 5.327 9 C -0.005 4.005 10 C -0.123 4.123 11 H 0.120 0.880 12 C -0.152 4.152 13 C -0.186 4.186 14 C 0.072 3.928 15 H 0.071 0.929 16 N -0.368 5.368 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.125 4.125 26 H 0.106 0.894 27 C -0.005 4.005 28 C -0.073 4.073 29 O -0.118 6.118 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -21.500 -13.788 -2.697 25.683 hybrid contribution -0.064 1.001 0.224 1.027 sum -21.564 -12.787 -2.474 25.192 Atomic orbital electron populations 1.23292 0.75216 1.05593 1.02976 1.86384 1.23565 1.15950 1.89362 1.23489 0.85770 0.79517 0.98393 1.71296 1.09202 1.15765 1.23144 1.21709 0.95834 0.88241 1.09760 1.16239 0.81092 0.85423 0.77730 1.90878 1.86148 1.12299 1.51636 1.48284 1.05963 1.07910 1.70527 1.22044 0.96605 0.79298 1.02510 1.23230 0.93072 0.98353 0.97676 0.87979 1.22423 0.97488 1.00391 0.94899 1.22974 0.94395 0.99498 1.01730 1.20672 0.91785 0.87404 0.92926 0.92851 1.42708 1.05501 1.05502 1.83139 1.19238 0.83972 0.94307 1.39613 0.91169 1.24750 0.97329 0.96203 1.02644 1.69663 1.31219 1.02786 1.54243 0.86215 0.85024 0.77748 0.77337 1.21794 1.21864 1.20825 1.23210 0.96095 0.93397 0.99839 0.89358 1.22258 0.78001 0.97540 1.02699 1.24963 0.84856 0.93755 1.03688 1.84373 1.39603 1.15894 1.71950 0.91448 0.86340 0.91436 0.90909 0.91142 0.92370 0.91850 0.93048 0.90830 0.77769 0.93468 0.89697 0.89913 0.74717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.73 101.05 1.08 1.18 16 2 O -0.24 -2.19 10.55 -40.98 -0.43 -2.62 16 3 C 0.37 4.16 8.98 52.22 0.47 4.62 16 4 N -0.45 -6.01 8.86 -11.71 -0.10 -6.11 16 5 C -0.04 -0.51 6.82 -82.99 -0.57 -1.07 16 6 C 0.61 10.38 7.84 -12.54 -0.10 10.28 16 7 O -0.53 -10.59 17.14 5.26 0.09 -10.50 16 8 N -0.60 -9.89 3.32 -172.39 -0.57 -10.46 16 9 C 0.12 1.66 4.76 -3.18 -0.02 1.64 16 10 C -0.10 -1.42 4.25 -87.19 -0.37 -1.79 16 11 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.11 -1.67 5.59 -25.10 -0.14 -1.81 16 13 C -0.15 -2.54 6.56 -25.69 -0.17 -2.71 16 14 C 0.18 3.56 3.22 -67.11 -0.22 3.34 16 15 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 16 N -0.73 -17.97 4.80 -52.63 -0.25 -18.22 16 17 C -0.24 -6.63 9.95 -15.06 -0.15 -6.78 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.11 -1.75 4.03 -87.80 -0.35 -2.11 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 27 C 0.12 2.16 4.41 -2.88 -0.01 2.15 16 28 C 0.00 -0.01 11.93 29.90 0.36 0.35 16 29 O -0.23 -2.25 10.20 -17.75 -0.18 -2.43 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.07 1.02 7.46 -51.93 -0.39 0.63 16 34 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.00 7.28 -51.93 -0.38 0.63 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 39 H 0.39 10.18 5.36 -40.82 -0.22 9.96 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.08 1.76 6.31 -51.93 -0.33 1.44 16 42 H 0.08 1.71 8.02 -51.93 -0.42 1.29 16 43 H 0.24 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -33.88 352.58 -6.60 -40.48 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.88 Total: 7.92 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.28 Total: 6.83 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.20 Total: -62.55 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.52 Total: -15.55 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.88 -6.60 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.945 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds