Wall clock time and date at job start Tue Mar 31 2020 13:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35354 * 116.99890 * 2 1 4 4 N 1.30554 * 125.44587 * 180.29628 * 3 2 1 5 5 C 1.36321 * 108.38329 * 180.16268 * 4 3 2 6 6 C 1.47376 * 126.41148 * 179.82300 * 5 4 3 7 7 O 1.21621 * 119.99841 * 179.68783 * 6 5 4 8 8 N 1.34772 * 120.00090 * 359.69460 * 6 5 4 9 9 C 1.46914 * 125.61575 * 359.95514 * 8 6 5 10 10 C 1.54212 * 107.63029 * 178.51628 * 9 8 6 11 11 H 1.08999 * 113.72192 * 215.27593 * 10 9 8 12 12 C 1.54979 * 108.03412 * 87.01397 * 10 9 8 13 13 C 1.54132 * 104.56695 * 214.53452 * 12 10 9 14 14 C 1.53872 * 106.53977 * 24.51247 * 13 12 10 15 15 H 1.09005 * 109.92116 * 238.93345 * 14 13 12 16 16 N 1.46502 * 109.92063 * 117.82543 * 14 13 12 17 17 C 1.36932 * 120.00013 * 86.45622 * 16 14 13 18 18 H 1.07994 * 119.99916 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99854 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47283 * 89.99658 * 21 19 17 23 23 H 1.48502 * 109.47177 * 209.99964 * 21 19 17 24 24 H 1.48503 * 109.46633 * 329.99545 * 21 19 17 25 25 C 1.53709 * 107.02848 * 358.27680 * 14 13 12 26 26 H 1.09002 * 112.96790 * 214.07982 * 25 14 13 27 27 C 1.47339 * 125.62068 * 179.97438 * 8 6 5 28 28 C 1.35912 * 107.17664 * 359.56411 * 5 4 3 29 29 O 1.34201 * 125.44995 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46882 * 59.99811 * 1 2 3 31 31 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46836 * 300.00354 * 1 2 3 33 33 H 1.08995 * 109.81980 * 298.04075 * 9 8 6 34 34 H 1.08998 * 109.82302 * 58.90662 * 9 8 6 35 35 H 1.08998 * 110.44543 * 95.75663 * 12 10 9 36 36 H 1.09003 * 110.42209 * 333.29333 * 12 10 9 37 37 H 1.09002 * 110.05258 * 265.22682 * 13 12 10 38 38 H 1.09000 * 110.04775 * 143.79498 * 13 12 10 39 39 H 0.97001 * 119.99674 * 266.45195 * 16 14 13 40 40 H 0.96996 * 119.99955 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.29853 * 84.94294 * 27 8 6 42 42 H 1.09002 * 110.37718 * 322.84937 * 27 8 6 43 43 H 1.07999 * 126.46061 * 180.29065 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3349 1.3978 -0.0055 5 6 3.5701 2.7406 0.0002 6 6 4.8893 3.3976 0.0007 7 8 4.9641 4.6115 0.0004 8 7 6.0129 2.6532 0.0012 9 6 6.0665 1.1850 0.0024 10 6 7.5517 0.7719 -0.0354 11 1 7.7410 -0.1315 -0.6152 12 6 8.0725 0.7198 1.4233 13 6 9.5381 1.1876 1.3287 14 6 9.6410 2.0519 0.0598 15 1 10.3774 1.6254 -0.6214 16 7 10.0252 3.4197 0.4173 17 6 11.3483 3.7471 0.5482 18 1 12.1086 2.9970 0.3884 19 6 11.7123 5.0432 0.8864 20 7 10.7857 5.9576 1.0807 21 14 13.5173 5.4902 1.0644 22 1 14.0452 5.9487 -0.2455 23 1 13.6615 6.5783 2.0646 24 1 14.2800 4.2986 1.5159 25 6 8.2530 2.0487 -0.6007 26 1 8.2999 2.0819 -1.6892 27 6 7.3897 3.1777 0.0011 28 6 2.3604 3.3600 -0.0004 29 8 1.4228 2.3958 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 5.5983 0.7989 0.9077 34 1 5.5507 0.7956 -0.8753 35 1 8.0226 -0.2983 1.8094 36 1 7.4980 1.3959 2.0567 37 1 10.2010 0.3260 1.2488 38 1 9.7989 1.7793 2.2061 39 1 9.3422 4.0933 0.5611 40 1 11.0400 6.8632 1.3174 41 1 7.7109 3.3971 1.0194 42 1 7.4546 4.0736 -0.6164 43 1 2.1850 4.4257 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026319016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:10 Heat of formation + Delta-G solvation = -37.639459 kcal Electronic energy + Delta-G solvation = -27438.543886 eV Core-core repulsion = 23485.995601 eV Total energy + Delta-G solvation = -3952.548285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.55878 -41.64867 -39.93809 -39.56680 -36.70874 -36.02362 -34.89276 -32.70831 -31.41780 -30.45496 -29.82595 -28.28604 -27.20382 -25.80645 -25.10681 -23.82917 -23.32545 -21.22105 -20.94723 -20.28592 -19.55509 -19.06659 -18.59851 -18.42607 -17.47345 -17.21117 -16.76521 -16.66823 -16.29810 -16.11387 -15.88522 -15.61747 -15.10000 -14.60956 -14.38476 -14.31689 -13.98438 -13.74359 -13.56090 -13.24847 -13.07651 -13.00738 -12.94423 -12.59186 -12.38290 -12.13796 -12.09636 -12.01776 -11.77692 -11.61235 -11.55620 -11.42925 -11.33443 -11.15496 -10.89377 -9.93904 -9.59714 -8.96195 -7.90735 -5.19408 -0.01629 0.87142 0.91179 1.47448 1.49484 1.57709 1.62295 1.93693 2.11551 2.58133 3.15918 3.37912 3.42908 3.59118 3.73075 3.80411 4.05935 4.21674 4.22050 4.24561 4.27206 4.34423 4.41042 4.41462 4.47519 4.59771 4.67589 4.67746 4.70534 4.78255 4.84926 4.95986 5.09648 5.15641 5.25135 5.26957 5.34528 5.52263 5.54792 5.61629 5.67778 6.31469 6.32905 6.47778 6.92641 7.36719 8.14954 8.35712 9.32945 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002907 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.998117 B = 9631.030089 C =10497.991896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.253 6.253 3 C 0.382 3.618 4 N -0.472 5.472 5 C -0.070 4.070 6 C 0.604 3.396 7 O -0.574 6.574 8 N -0.598 5.598 9 C 0.124 3.876 10 C -0.084 4.084 11 H 0.141 0.859 12 C -0.107 4.107 13 C -0.138 4.138 14 C 0.173 3.827 15 H 0.057 0.943 16 N -0.740 5.740 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.974 5.974 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.300 1.300 24 H -0.267 1.267 25 C -0.100 4.100 26 H 0.098 0.902 27 C 0.126 3.874 28 C 0.030 3.970 29 O -0.214 6.214 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.539 -16.863 -3.277 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.161 6.161 3 C 0.136 3.864 4 N -0.218 5.218 5 C -0.187 4.187 6 C 0.393 3.607 7 O -0.455 6.455 8 N -0.329 5.329 9 C 0.002 3.998 10 C -0.103 4.103 11 H 0.159 0.841 12 C -0.144 4.144 13 C -0.178 4.178 14 C 0.065 3.935 15 H 0.075 0.925 16 N -0.382 5.382 17 C -0.366 4.366 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.625 5.625 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.227 1.227 24 H -0.192 1.192 25 C -0.120 4.120 26 H 0.116 0.884 27 C 0.003 3.997 28 C -0.043 4.043 29 O -0.105 6.105 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.208 0.792 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -22.941 -16.970 -3.272 28.723 hybrid contribution 0.227 1.860 0.392 1.914 sum -22.715 -15.110 -2.880 27.433 Atomic orbital electron populations 1.23707 0.72654 1.07793 1.03840 1.86424 1.26075 1.14622 1.88943 1.23557 0.85539 0.80285 0.97038 1.71150 1.10691 1.15346 1.24662 1.21252 0.94953 0.89121 1.13405 1.16706 0.82255 0.85132 0.76639 1.90840 1.86989 1.14100 1.53571 1.48368 1.05045 1.09142 1.70330 1.22132 0.96921 0.77424 1.03281 1.23310 0.91975 0.98029 0.96968 0.84083 1.22369 0.94902 1.01647 0.95495 1.22783 0.97043 0.99202 0.98774 1.20979 0.93335 0.85074 0.94145 0.92517 1.42950 1.04402 1.07536 1.83307 1.19672 0.85403 0.94314 1.37203 0.90274 1.25578 1.01409 0.96480 1.03845 1.69847 1.33228 1.02814 1.56591 0.85150 0.80320 0.77472 0.76900 1.21569 1.22686 1.19185 1.23137 0.94286 0.94444 1.00099 0.88366 1.21899 0.80021 0.97418 1.00338 1.25460 0.83907 0.94737 1.00150 1.84422 1.38920 1.15569 1.71555 0.90530 0.83531 0.90622 0.90449 0.89922 0.89009 0.93783 0.90836 0.94334 0.79231 0.94268 0.92724 0.93226 0.72108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.73 113.37 1.22 1.29 16 2 O -0.25 -3.85 10.55 -64.23 -0.68 -4.53 16 3 C 0.38 7.67 8.98 130.43 1.17 8.84 16 4 N -0.47 -11.96 8.86 -419.39 -3.71 -15.67 16 5 C -0.07 -1.90 6.82 40.31 0.28 -1.62 16 6 C 0.60 21.18 7.84 86.65 0.68 21.86 16 7 O -0.57 -24.05 17.14 -4.10 -0.07 -24.12 16 8 N -0.60 -20.27 3.32 -817.56 -2.72 -22.99 16 9 C 0.12 3.27 4.76 86.71 0.41 3.68 16 10 C -0.08 -2.07 4.25 -8.57 -0.04 -2.11 16 11 H 0.14 2.52 8.14 -2.39 -0.02 2.51 16 12 C -0.11 -2.89 5.59 31.65 0.18 -2.71 16 13 C -0.14 -4.68 6.56 31.27 0.21 -4.47 16 14 C 0.17 6.71 3.22 45.52 0.15 6.86 16 15 H 0.06 2.16 8.09 -2.38 -0.02 2.14 16 16 N -0.74 -37.94 4.80 -320.42 -1.54 -39.47 16 17 C -0.23 -13.15 9.95 84.03 0.84 -12.31 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 20 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 21 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.10 -3.28 4.03 -8.96 -0.04 -3.32 16 26 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 27 C 0.13 4.92 4.41 86.67 0.38 5.30 16 28 C 0.03 0.60 11.93 67.28 0.80 1.41 16 29 O -0.21 -3.73 10.20 18.92 0.19 -3.53 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.08 2.02 7.46 -2.39 -0.02 2.00 16 34 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.37 7.28 -2.39 -0.02 1.36 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.57 7.91 -2.39 -0.02 1.56 16 39 H 0.37 20.92 5.36 -92.71 -0.50 20.43 16 40 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.05 2.46 6.31 -2.39 -0.02 2.44 16 42 H 0.05 2.23 8.02 -2.39 -0.02 2.21 16 43 H 0.26 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -77.60 352.58 1.03 -76.56 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.55 Total: 27.83 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.70 Total: 18.37 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -7.69 Total: -140.04 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.55 Total: -32.18 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -77.60 1.03 -76.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.924 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds