Wall clock time and date at job start Tue Mar 31 2020 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 120.00092 * 2 1 4 4 H 1.07990 * 120.00067 * 204.85560 * 3 2 1 5 5 C 1.38810 * 119.99587 * 24.85866 * 3 2 1 6 6 N 1.31615 * 120.00599 * 13.85882 * 5 3 2 7 7 Si 1.86806 * 119.99754 * 193.86472 * 5 3 2 8 8 H 1.48501 * 109.47148 * 89.99360 * 7 5 3 9 9 H 1.48498 * 109.47438 * 210.00041 * 7 5 3 10 10 H 1.48505 * 109.46959 * 330.00100 * 7 5 3 11 11 C 1.46500 * 119.99856 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.49612 * 179.97438 * 11 2 1 13 13 C 1.53033 * 109.49632 * 299.99910 * 11 2 1 14 14 C 1.53045 * 109.53698 * 181.31354 * 13 11 2 15 15 C 1.53188 * 109.31661 * 298.63935 * 14 13 11 16 16 N 1.46928 * 108.77588 * 54.62996 * 15 14 13 17 17 C 1.34774 * 120.62705 * 126.41600 * 16 15 14 18 18 O 1.21612 * 119.99568 * 175.48869 * 17 16 15 19 19 C 1.47287 * 120.00214 * 355.49347 * 17 16 15 20 20 C 1.36576 * 125.80590 * 186.59144 * 19 17 16 21 21 C 1.40065 * 106.92657 * 179.97438 * 20 19 17 22 22 C 1.36577 * 106.92307 * 359.97438 * 21 20 19 23 23 C 1.47293 * 125.79869 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99311 * 180.02562 * 23 22 21 25 25 O 1.21604 * 120.00669 * 0.02562 * 23 22 21 26 26 O 1.34548 * 108.39038 * 359.76086 * 22 21 20 27 27 C 1.46923 * 118.73943 * 306.39555 * 16 15 14 28 28 H 1.08999 * 109.47127 * 271.80340 * 1 2 3 29 29 H 1.09005 * 109.46891 * 31.80034 * 1 2 3 30 30 H 1.08995 * 109.47276 * 151.79805 * 1 2 3 31 31 H 0.97002 * 120.00221 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46331 * 301.33421 * 13 11 2 33 33 H 1.09005 * 109.46318 * 61.29998 * 13 11 2 34 34 H 1.09003 * 109.49126 * 58.59135 * 14 13 11 35 35 H 1.09002 * 109.49662 * 178.64932 * 14 13 11 36 36 H 1.09000 * 109.59080 * 174.42145 * 15 14 13 37 37 H 1.09001 * 109.58164 * 294.84722 * 15 14 13 38 38 H 1.07998 * 126.53599 * 359.96332 * 20 19 17 39 39 H 1.07993 * 126.53518 * 180.02562 * 21 20 19 40 40 H 0.96996 * 120.00504 * 0.02562 * 24 23 22 41 41 H 0.97003 * 119.99740 * 180.02562 * 24 23 22 42 42 H 1.09008 * 109.58505 * 293.82150 * 27 16 15 43 43 H 1.08995 * 109.58425 * 173.39708 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1546 1.2292 -0.3931 5 6 1.5521 2.3323 0.5054 6 7 0.4542 2.2395 1.2253 7 14 2.3060 4.0069 0.1635 8 1 1.7340 4.5608 -1.0900 9 1 2.0065 4.9244 1.2921 10 1 3.7771 3.8668 0.0166 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 -0.0009 13 6 1.8282 -2.0722 1.2484 14 6 2.6175 -3.3834 1.2654 15 6 2.2496 -4.2123 0.0308 16 7 2.4653 -3.3936 -1.1700 17 6 3.2357 -3.8450 -2.1795 18 8 3.3405 -3.1950 -3.2019 19 6 3.9506 -5.1257 -2.0445 20 6 4.8565 -5.6325 -2.9320 21 6 5.2882 -6.8615 -2.4171 22 6 4.6279 -7.0520 -1.2369 23 6 4.7716 -8.2174 -0.3477 24 7 4.0589 -8.2855 0.7943 25 8 5.5331 -9.1181 -0.6438 26 8 3.8274 -5.9921 -1.0224 27 6 1.8248 -2.0737 -1.2495 28 1 -0.3633 0.0323 1.0271 29 1 -0.3633 0.8735 -0.5416 30 1 -0.3633 -0.9056 -0.4856 31 1 0.0364 3.0407 1.5781 32 1 2.0698 -1.4914 2.1385 33 1 0.7605 -2.2914 1.2367 34 1 3.6854 -3.1652 1.2522 35 1 2.3719 -3.9442 2.1672 36 1 2.8801 -5.1004 -0.0142 37 1 1.2020 -4.5079 0.0882 38 1 5.1784 -5.1734 -3.8550 39 1 6.0069 -7.5303 -2.8671 40 1 3.4512 -7.5673 1.0303 41 1 4.1538 -9.0528 1.3801 42 1 0.7425 -2.1950 -1.2966 43 1 2.1750 -1.5508 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027487247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:13 Heat of formation + Delta-G solvation = -16.996893 kcal Electronic energy + Delta-G solvation = -27542.570706 eV Core-core repulsion = 23590.917550 eV Total energy + Delta-G solvation = -3951.653156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.20258 -40.00568 -39.49839 -37.62307 -35.26706 -34.34415 -33.44139 -32.44745 -31.46694 -30.57953 -28.81357 -26.12144 -25.93255 -24.28889 -23.60700 -22.25363 -21.79730 -21.03729 -20.45603 -19.06512 -18.56015 -17.57627 -17.24233 -16.95320 -16.77125 -16.07512 -15.29914 -15.05501 -14.86942 -14.60655 -14.40038 -14.32256 -13.82965 -13.59989 -13.52709 -13.38800 -13.20661 -12.76478 -12.65827 -12.31092 -12.00895 -11.14148 -11.00316 -10.93799 -10.91765 -10.66393 -10.49534 -10.44135 -10.39980 -10.27688 -10.26423 -10.13479 -9.95840 -9.77626 -9.13957 -8.69447 -8.46693 -6.79342 -5.78319 -3.25758 0.33603 1.63457 1.97695 2.72830 2.82726 3.01238 3.11862 3.36983 3.43754 3.44853 4.13802 4.43798 4.46971 4.55938 4.86721 5.04942 5.15375 5.16601 5.26892 5.38768 5.45354 5.46449 5.61891 5.71535 5.82526 5.88927 5.90375 6.07344 6.10600 6.12060 6.28899 6.30467 6.43426 6.51563 6.69682 6.80328 6.85295 6.92050 7.29275 7.33401 7.62490 7.64315 7.77723 7.96442 8.35923 9.17997 9.80083 10.29288 11.26950 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.002954 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.639369 B = 9477.988106 C =10017.455484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.590 5.590 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.091 3.909 16 N -0.590 5.590 17 C 0.591 3.409 18 O -0.514 6.514 19 C -0.023 4.023 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.072 4.072 23 C 0.611 3.389 24 N -0.841 5.841 25 O -0.520 6.520 26 O -0.145 6.145 27 C 0.096 3.904 28 H 0.028 0.972 29 H 0.044 0.956 30 H -0.001 1.001 31 H 0.253 0.747 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.408 0.592 41 H 0.411 0.589 42 H 0.070 0.930 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -20.228 -0.596 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.311 5.311 3 C -0.389 4.389 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.085 0.915 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.031 4.031 16 N -0.322 5.322 17 C 0.377 3.623 18 O -0.391 6.391 19 C -0.077 4.077 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.125 4.125 23 C 0.395 3.605 24 N -0.405 5.405 25 O -0.397 6.397 26 O -0.042 6.042 27 C -0.027 4.027 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.187 0.813 39 H 0.185 0.815 40 H 0.238 0.762 41 H 0.243 0.757 42 H 0.088 0.912 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.482 -20.125 -1.121 20.648 hybrid contribution 0.049 0.987 0.304 1.034 sum 4.531 -19.138 -0.817 19.684 Atomic orbital electron populations 1.20785 0.82698 0.96013 0.98986 1.43861 1.01737 0.99948 1.85596 1.19217 0.99614 0.85632 1.34392 0.91409 1.25033 0.98123 0.98623 0.97509 1.70058 1.21279 1.27601 1.35919 0.86255 0.78832 0.84051 0.77399 1.21395 1.21762 1.20414 1.20592 0.96635 0.86369 0.90503 0.91541 1.22139 0.99455 0.94588 1.01078 1.21939 1.01205 0.97465 0.96423 1.22357 1.02018 0.94089 0.84634 1.48142 1.47454 1.19278 1.17298 1.16853 0.79163 0.82203 0.84049 1.90884 1.63709 1.56134 1.28418 1.22719 1.02980 0.92992 0.89008 1.21990 0.97490 0.95212 1.01307 1.21975 1.00785 0.97421 0.94058 1.22439 0.99725 0.90746 0.99588 1.16630 0.80089 0.83351 0.80409 1.43696 1.46179 1.27082 1.23522 1.90920 1.37758 1.37384 1.73619 1.84264 1.53125 1.25953 1.40908 1.22593 0.97195 0.80390 1.02520 0.95341 0.93698 0.98243 0.93701 0.91224 0.92350 0.91707 0.91058 0.88236 0.90898 0.81279 0.81497 0.76233 0.75706 0.91204 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 8.07 59.85 0.48 4.21 16 2 N -0.59 -14.11 2.81 -173.35 -0.49 -14.59 16 3 C -0.26 -6.96 9.55 -15.06 -0.14 -7.10 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 5 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 6 N -0.90 -25.68 10.90 55.49 0.60 -25.07 16 7 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.26 2.74 -67.81 -0.19 3.07 16 12 H 0.07 1.37 7.88 -51.93 -0.41 0.96 16 13 C -0.13 -2.17 5.15 -26.69 -0.14 -2.31 16 14 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 15 C 0.09 1.01 6.33 -3.71 -0.02 0.99 16 16 N -0.59 -8.56 2.97 -174.09 -0.52 -9.08 16 17 C 0.59 8.95 7.68 -12.58 -0.10 8.86 16 18 O -0.51 -9.40 16.30 5.27 0.09 -9.31 16 19 C -0.02 -0.29 6.87 -36.50 -0.25 -0.54 16 20 C -0.14 -1.52 10.60 -39.50 -0.42 -1.94 16 21 C -0.12 -1.20 10.60 -39.50 -0.42 -1.62 16 22 C -0.07 -0.72 7.14 -36.50 -0.26 -0.98 16 23 C 0.61 5.73 8.08 -12.58 -0.10 5.63 16 24 N -0.84 -4.57 8.87 30.40 0.27 -4.30 16 25 O -0.52 -6.51 17.70 5.27 0.09 -6.42 16 26 O -0.15 -1.47 6.80 4.35 0.03 -1.44 16 27 C 0.10 1.66 5.77 -3.71 -0.02 1.64 16 28 H 0.03 0.71 7.49 -51.93 -0.39 0.32 16 29 H 0.04 1.14 7.27 -51.93 -0.38 0.77 16 30 H 0.00 -0.02 6.34 -51.93 -0.33 -0.35 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.94 3.74 -55.47 -0.21 0.74 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.41 1.49 8.59 -40.82 -0.35 1.14 16 41 H 0.41 1.52 8.93 -40.82 -0.36 1.15 16 42 H 0.07 1.19 6.48 -51.92 -0.34 0.85 16 43 H 0.09 1.82 7.03 -51.93 -0.37 1.46 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -32.56 353.25 -7.06 -39.63 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.61 Total: 0.42 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.83 Total: 8.25 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.13 Total: -53.04 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.21 Total: -17.17 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.56 -7.06 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027487247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.629 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds