Wall clock time and date at job start Tue Mar 31 2020 13:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99488 * 2 1 4 4 H 1.08004 * 119.99731 * 204.78613 * 3 2 1 5 5 C 1.38814 * 120.00367 * 24.78607 * 3 2 1 6 6 N 1.31616 * 119.99687 * 6.22621 * 5 3 2 7 7 Si 1.86795 * 119.99950 * 186.22109 * 5 3 2 8 8 H 1.48498 * 109.47462 * 60.00253 * 7 5 3 9 9 H 1.48499 * 109.47264 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47336 * 300.00135 * 7 5 3 11 11 C 1.46498 * 119.99765 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.49609 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.50204 * 59.99562 * 11 2 1 14 14 C 1.53037 * 109.53586 * 178.68245 * 13 11 2 15 15 C 1.53185 * 109.31574 * 61.36501 * 14 13 11 16 16 N 1.46919 * 108.77671 * 305.36369 * 15 14 13 17 17 C 1.34778 * 120.63265 * 233.58704 * 16 15 14 18 18 O 1.21596 * 120.00106 * 6.09405 * 17 16 15 19 19 C 1.47497 * 120.00025 * 186.09916 * 17 16 15 20 20 C 1.37810 * 126.77253 * 208.26034 * 19 17 16 21 21 O 1.33498 * 108.33751 * 180.02562 * 20 19 17 22 22 C 1.34882 * 109.89342 * 359.97438 * 21 20 19 23 23 C 1.46774 * 125.65327 * 179.97438 * 22 21 20 24 24 N 1.34773 * 120.00394 * 0.03072 * 23 22 21 25 25 O 1.21683 * 119.99571 * 180.02562 * 23 22 21 26 26 C 1.36058 * 108.68980 * 0.26586 * 22 21 20 27 27 C 1.46924 * 118.74042 * 53.86059 * 16 15 14 28 28 H 1.09002 * 109.46990 * 275.05179 * 1 2 3 29 29 H 1.08994 * 109.47576 * 35.05471 * 1 2 3 30 30 H 1.09002 * 109.47126 * 155.05896 * 1 2 3 31 31 H 0.97003 * 119.99516 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.45847 * 58.66168 * 13 11 2 33 33 H 1.08998 * 109.45581 * 298.70040 * 13 11 2 34 34 H 1.08999 * 109.50093 * 301.40820 * 14 13 11 35 35 H 1.09002 * 109.52623 * 181.33560 * 14 13 11 36 36 H 1.08998 * 109.59049 * 185.57518 * 15 14 13 37 37 H 1.09004 * 109.58617 * 65.15280 * 15 14 13 38 38 H 1.07999 * 125.82949 * 0.02562 * 20 19 17 39 39 H 0.97001 * 119.99799 * 359.97438 * 24 23 22 40 40 H 0.96996 * 120.00317 * 179.72644 * 24 23 22 41 41 H 1.07992 * 126.68769 * 179.72928 * 26 22 21 42 42 H 1.08993 * 109.59065 * 65.92570 * 27 16 15 43 43 H 1.09002 * 109.59178 * 186.35498 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1550 1.2290 -0.3921 5 6 1.5514 2.3327 0.5040 6 7 0.3766 2.2577 1.0926 7 14 2.4138 3.9822 0.3468 8 1 2.6311 4.2924 -1.0891 9 1 1.5728 5.0410 0.9606 10 1 3.7235 3.9245 1.0444 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2502 14 6 2.6175 -3.3823 -1.2682 15 6 2.2497 -4.2122 -0.0344 16 7 2.4655 -3.3946 1.1670 17 6 3.2360 -3.8468 2.1762 18 8 3.8491 -4.8895 2.0528 19 6 3.3353 -3.0767 3.4303 20 6 4.4030 -3.0529 4.3013 21 8 4.1011 -2.2365 5.3136 22 6 2.8672 -1.7216 5.1355 23 6 2.1923 -0.7846 6.0415 24 7 2.8116 -0.3678 7.1636 25 8 1.0736 -0.3840 5.7794 26 6 2.3494 -2.2197 3.9801 27 6 1.8204 -2.0772 1.2502 28 1 -0.3633 0.0905 1.0237 29 1 -0.3634 0.8412 -0.5902 30 1 -0.3633 -0.9318 -0.4334 31 1 -0.0412 3.0590 1.4451 32 1 2.0697 -1.4897 -2.1398 33 1 0.7605 -2.2904 -1.2385 34 1 3.6854 -3.1642 -1.2549 35 1 2.3721 -3.9429 -2.1702 36 1 2.8802 -5.1003 0.0100 37 1 1.2021 -4.5079 -0.0919 38 1 5.3263 -3.6009 4.1849 39 1 3.7033 -0.6874 7.3727 40 1 2.3672 0.2545 7.7603 41 1 1.3774 -2.0028 3.5624 42 1 0.7386 -2.2022 1.2953 43 1 2.1675 -1.5559 2.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027505215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:20 Heat of formation + Delta-G solvation = -21.023647 kcal Electronic energy + Delta-G solvation = -28188.454840 eV Core-core repulsion = 24236.627071 eV Total energy + Delta-G solvation = -3951.827769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.88955 -39.80618 -39.15332 -37.41076 -34.91108 -34.08430 -33.50295 -32.11871 -31.25451 -30.02177 -28.68817 -26.00642 -25.61814 -24.02563 -23.41957 -22.99733 -21.57362 -20.58772 -19.60967 -19.06038 -17.81286 -17.26108 -16.70309 -16.62118 -16.43484 -16.19816 -15.45059 -15.11448 -14.68604 -14.36962 -14.23867 -14.14600 -13.77324 -13.64010 -13.30869 -13.19600 -12.72591 -12.59871 -12.54958 -12.09921 -11.85458 -11.15843 -10.99700 -10.79196 -10.56509 -10.50334 -10.44264 -10.35768 -10.33401 -10.06234 -9.87618 -9.85496 -9.81632 -9.54093 -8.83036 -8.57920 -8.33239 -6.73813 -5.71737 -3.21228 0.93513 1.64686 2.48987 3.04255 3.10833 3.33080 3.38130 3.43416 3.44142 3.47942 4.44280 4.55260 4.64544 4.81430 5.13129 5.24500 5.28508 5.31130 5.44147 5.49713 5.57410 5.68658 5.69070 5.73370 5.90937 6.06634 6.07986 6.14357 6.19934 6.35329 6.38642 6.47890 6.65173 6.72172 6.79481 6.84160 6.95095 7.17191 7.41864 7.60369 7.75439 7.82175 8.05749 8.29254 8.41145 9.24064 9.85181 10.34670 11.31947 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008468 B = 0.006188 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.653645 B = 4523.653956 C = 6967.439500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.260 4.260 4 H 0.066 0.934 5 C 0.008 3.992 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.114 3.886 16 N -0.596 5.596 17 C 0.589 3.411 18 O -0.555 6.555 19 C -0.236 4.236 20 C 0.066 3.934 21 O -0.157 6.157 22 C -0.088 4.088 23 C 0.609 3.391 24 N -0.846 5.846 25 O -0.507 6.507 26 C -0.080 4.080 27 C 0.076 3.924 28 H 0.031 0.969 29 H 0.044 0.956 30 H -0.003 1.003 31 H 0.254 0.746 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.405 0.595 40 H 0.409 0.591 41 H 0.175 0.825 42 H 0.067 0.933 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -10.771 7.095 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.389 4.389 4 H 0.084 0.916 5 C -0.191 4.191 6 N -0.547 5.547 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.168 4.168 15 C -0.008 4.008 16 N -0.327 5.327 17 C 0.378 3.622 18 O -0.436 6.436 19 C -0.240 4.240 20 C -0.007 4.007 21 O -0.051 6.051 22 C -0.139 4.139 23 C 0.393 3.607 24 N -0.410 5.410 25 O -0.382 6.382 26 C -0.100 4.100 27 C -0.048 4.048 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.240 0.760 39 H 0.234 0.766 40 H 0.240 0.760 41 H 0.193 0.807 42 H 0.085 0.915 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.658 -10.873 7.027 14.129 hybrid contribution 0.549 1.163 0.143 1.294 sum 6.207 -9.710 7.170 13.573 Atomic orbital electron populations 1.20836 0.82479 0.95443 0.99531 1.43880 1.01851 0.99867 1.85687 1.19129 0.99276 0.85840 1.34687 0.91621 1.25103 0.97341 0.98607 0.98074 1.70028 1.16091 1.27742 1.40838 0.86356 0.78809 0.83766 0.77685 1.21047 1.21571 1.21001 1.20711 0.96447 0.86184 0.90647 0.91692 1.22104 0.99730 0.95076 1.00483 1.21891 1.00989 0.97103 0.96856 1.21608 1.01191 0.94279 0.83758 1.48093 1.48347 1.19163 1.17139 1.17232 0.78830 0.84015 0.82097 1.90739 1.46316 1.24395 1.82129 1.20639 0.97158 1.06449 0.99781 1.24896 0.99596 0.91751 0.84491 1.83895 1.30864 1.48075 1.42307 1.21816 0.85567 1.05800 1.00732 1.16497 0.84762 0.79206 0.80216 1.43637 1.21798 1.50599 1.24999 1.91010 1.17887 1.55920 1.73406 1.22285 1.01152 0.93961 0.92625 1.23289 0.97397 0.81045 1.03073 0.95050 0.93705 0.98440 0.93575 0.91696 0.92206 0.91786 0.91244 0.89341 0.91616 0.75967 0.76649 0.75963 0.80729 0.91514 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.89 59.85 0.47 4.33 16 2 N -0.59 -14.24 2.82 -173.08 -0.49 -14.73 16 3 C -0.26 -6.98 9.59 -15.06 -0.14 -7.13 16 4 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 5 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 6 N -0.90 -26.02 10.47 55.49 0.58 -25.44 16 7 Si 0.90 21.79 29.56 -169.99 -5.02 16.77 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.17 3.35 2.75 -67.58 -0.19 3.16 16 12 H 0.06 1.36 7.88 -51.93 -0.41 0.95 16 13 C -0.13 -2.23 5.13 -26.69 -0.14 -2.37 16 14 C -0.13 -1.77 6.08 -26.62 -0.16 -1.93 16 15 C 0.11 1.59 6.44 -3.72 -0.02 1.57 16 16 N -0.60 -9.57 2.97 -173.75 -0.52 -10.08 16 17 C 0.59 9.71 7.64 -12.49 -0.10 9.61 16 18 O -0.56 -10.01 16.44 5.28 0.09 -9.93 16 19 C -0.24 -3.52 5.59 -104.95 -0.59 -4.11 16 20 C 0.07 0.77 12.04 30.58 0.37 1.14 16 21 O -0.16 -1.86 10.32 6.19 0.06 -1.80 16 22 C -0.09 -1.27 7.09 -36.92 -0.26 -1.53 16 23 C 0.61 8.91 8.06 -12.81 -0.10 8.80 16 24 N -0.85 -8.05 8.87 30.28 0.27 -7.78 16 25 O -0.51 -9.66 17.68 5.20 0.09 -9.57 16 26 C -0.08 -1.26 8.14 -39.03 -0.32 -1.57 16 27 C 0.08 1.36 4.63 -3.48 -0.02 1.34 16 28 H 0.03 0.82 7.34 -51.93 -0.38 0.43 16 29 H 0.04 1.17 7.27 -51.93 -0.38 0.79 16 30 H 0.00 -0.06 6.46 -51.93 -0.34 -0.39 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.22 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.40 2.74 8.57 -40.82 -0.35 2.39 16 40 H 0.41 3.22 8.93 -40.82 -0.36 2.85 16 41 H 0.18 2.96 6.45 -52.49 -0.34 2.62 16 42 H 0.07 1.21 7.53 -51.93 -0.39 0.82 16 43 H 0.10 1.86 4.09 -51.93 -0.21 1.65 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.57 351.74 -6.45 -40.02 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.53 Total: 5.79 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -1.28 Total: 11.45 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.15 Total: -58.04 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.24 Total: -21.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.57 -6.45 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.999 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds