Wall clock time and date at job start Tue Mar 31 2020 13:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99488 * 2 1 4 4 H 1.08004 * 119.99731 * 204.78613 * 3 2 1 5 5 C 1.38814 * 120.00367 * 24.78607 * 3 2 1 6 6 N 1.31616 * 119.99687 * 6.22621 * 5 3 2 7 7 Si 1.86795 * 119.99950 * 186.22109 * 5 3 2 8 8 H 1.48498 * 109.47462 * 60.00253 * 7 5 3 9 9 H 1.48499 * 109.47264 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47336 * 300.00135 * 7 5 3 11 11 C 1.46498 * 119.99765 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.49609 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.50204 * 59.99562 * 11 2 1 14 14 C 1.53037 * 109.53586 * 178.68245 * 13 11 2 15 15 C 1.53185 * 109.31574 * 61.36501 * 14 13 11 16 16 N 1.46919 * 108.77671 * 305.36369 * 15 14 13 17 17 C 1.34778 * 120.63265 * 233.58704 * 16 15 14 18 18 O 1.21596 * 120.00106 * 6.09405 * 17 16 15 19 19 C 1.47497 * 120.00025 * 186.09916 * 17 16 15 20 20 C 1.37810 * 126.77253 * 208.26034 * 19 17 16 21 21 O 1.33498 * 108.33751 * 180.02562 * 20 19 17 22 22 C 1.34882 * 109.89342 * 359.97438 * 21 20 19 23 23 C 1.46774 * 125.65327 * 179.97438 * 22 21 20 24 24 N 1.34773 * 120.00394 * 0.03072 * 23 22 21 25 25 O 1.21683 * 119.99571 * 180.02562 * 23 22 21 26 26 C 1.36058 * 108.68980 * 0.26586 * 22 21 20 27 27 C 1.46924 * 118.74042 * 53.86059 * 16 15 14 28 28 H 1.09002 * 109.46990 * 275.05179 * 1 2 3 29 29 H 1.08994 * 109.47576 * 35.05471 * 1 2 3 30 30 H 1.09002 * 109.47126 * 155.05896 * 1 2 3 31 31 H 0.97003 * 119.99516 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.45847 * 58.66168 * 13 11 2 33 33 H 1.08998 * 109.45581 * 298.70040 * 13 11 2 34 34 H 1.08999 * 109.50093 * 301.40820 * 14 13 11 35 35 H 1.09002 * 109.52623 * 181.33560 * 14 13 11 36 36 H 1.08998 * 109.59049 * 185.57518 * 15 14 13 37 37 H 1.09004 * 109.58617 * 65.15280 * 15 14 13 38 38 H 1.07999 * 125.82949 * 0.02562 * 20 19 17 39 39 H 0.97001 * 119.99799 * 359.97438 * 24 23 22 40 40 H 0.96996 * 120.00317 * 179.72644 * 24 23 22 41 41 H 1.07992 * 126.68769 * 179.72928 * 26 22 21 42 42 H 1.08993 * 109.59065 * 65.92570 * 27 16 15 43 43 H 1.09002 * 109.59178 * 186.35498 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1550 1.2290 -0.3921 5 6 1.5514 2.3327 0.5040 6 7 0.3766 2.2577 1.0926 7 14 2.4138 3.9822 0.3468 8 1 2.6311 4.2924 -1.0891 9 1 1.5728 5.0410 0.9606 10 1 3.7235 3.9245 1.0444 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2502 14 6 2.6175 -3.3823 -1.2682 15 6 2.2497 -4.2122 -0.0344 16 7 2.4655 -3.3946 1.1670 17 6 3.2360 -3.8468 2.1762 18 8 3.8491 -4.8895 2.0528 19 6 3.3353 -3.0767 3.4303 20 6 4.4030 -3.0529 4.3013 21 8 4.1011 -2.2365 5.3136 22 6 2.8672 -1.7216 5.1355 23 6 2.1923 -0.7846 6.0415 24 7 2.8116 -0.3678 7.1636 25 8 1.0736 -0.3840 5.7794 26 6 2.3494 -2.2197 3.9801 27 6 1.8204 -2.0772 1.2502 28 1 -0.3633 0.0905 1.0237 29 1 -0.3634 0.8412 -0.5902 30 1 -0.3633 -0.9318 -0.4334 31 1 -0.0412 3.0590 1.4451 32 1 2.0697 -1.4897 -2.1398 33 1 0.7605 -2.2904 -1.2385 34 1 3.6854 -3.1642 -1.2549 35 1 2.3721 -3.9429 -2.1702 36 1 2.8802 -5.1003 0.0100 37 1 1.2021 -4.5079 -0.0919 38 1 5.3263 -3.6009 4.1849 39 1 3.7033 -0.6874 7.3727 40 1 2.3672 0.2545 7.7603 41 1 1.3774 -2.0028 3.5624 42 1 0.7386 -2.2022 1.2953 43 1 2.1675 -1.5559 2.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027505215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:19 Heat of formation + Delta-G solvation = -46.039581 kcal Electronic energy + Delta-G solvation = -28189.539612 eV Core-core repulsion = 24236.627071 eV Total energy + Delta-G solvation = -3952.912541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.97211 -41.11705 -40.33309 -38.89387 -36.62419 -35.18303 -34.64067 -33.70961 -32.79772 -31.11705 -30.34738 -28.02643 -26.89473 -25.43285 -24.81910 -24.28316 -22.89720 -21.84332 -20.99865 -20.26982 -19.14237 -18.64321 -18.30287 -17.72362 -17.47107 -17.42733 -16.92041 -16.68374 -16.12843 -15.73632 -15.55738 -15.36505 -15.28979 -15.13617 -14.66604 -14.49990 -14.36577 -13.99669 -13.74812 -13.67474 -13.39929 -12.90120 -12.75813 -12.49875 -12.20694 -12.19876 -12.10534 -11.81780 -11.75544 -11.57011 -11.46125 -11.29536 -10.92818 -10.85696 -10.61483 -9.94416 -9.68408 -8.71430 -7.80642 -5.31713 -0.14458 0.46584 1.41149 1.45053 1.46405 1.53333 1.82346 1.91750 2.15348 2.44837 2.50546 3.28683 3.34742 3.63742 3.70230 3.76123 3.93059 4.02571 4.14279 4.18645 4.22978 4.34333 4.37034 4.59693 4.68694 4.71809 4.77977 4.86718 4.89145 4.99693 5.02407 5.10716 5.30366 5.38792 5.42696 5.51311 5.56924 5.64479 5.73315 5.77472 6.24985 6.26912 6.36394 7.01531 7.09227 7.17143 7.87866 8.31704 9.20811 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008468 B = 0.006188 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.653645 B = 4523.653956 C = 6967.439500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.605 5.605 3 C -0.265 4.265 4 H 0.067 0.933 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.276 1.276 9 H -0.296 1.296 10 H -0.277 1.277 11 C 0.166 3.834 12 H 0.051 0.949 13 C -0.125 4.125 14 C -0.118 4.118 15 C 0.110 3.890 16 N -0.597 5.597 17 C 0.591 3.409 18 O -0.570 6.570 19 C -0.268 4.268 20 C 0.101 3.899 21 O -0.138 6.138 22 C -0.094 4.094 23 C 0.605 3.395 24 N -0.817 5.817 25 O -0.563 6.563 26 C -0.096 4.096 27 C 0.094 3.906 28 H 0.002 0.998 29 H 0.016 0.984 30 H 0.030 0.970 31 H 0.247 0.753 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.267 0.733 39 H 0.422 0.578 40 H 0.420 0.580 41 H 0.153 0.847 42 H 0.061 0.939 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 -12.169 7.137 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.328 5.328 3 C -0.395 4.395 4 H 0.085 0.915 5 C -0.242 4.242 6 N -0.579 5.579 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.222 1.222 10 H -0.203 1.203 11 C 0.058 3.942 12 H 0.069 0.931 13 C -0.164 4.164 14 C -0.156 4.156 15 C -0.011 4.011 16 N -0.328 5.328 17 C 0.381 3.619 18 O -0.452 6.452 19 C -0.272 4.272 20 C 0.028 3.972 21 O -0.031 6.031 22 C -0.145 4.145 23 C 0.390 3.610 24 N -0.381 5.381 25 O -0.443 6.443 26 C -0.117 4.117 27 C -0.030 4.030 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.283 0.717 39 H 0.254 0.746 40 H 0.253 0.747 41 H 0.170 0.830 42 H 0.079 0.921 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.907 -12.303 7.096 16.255 hybrid contribution -0.035 1.500 0.154 1.509 sum 7.872 -10.803 7.250 15.206 Atomic orbital electron populations 1.20508 0.82707 0.95773 0.97459 1.44037 1.01955 1.00817 1.85964 1.19437 0.99298 0.87102 1.33644 0.91498 1.25816 0.98120 1.01800 0.98495 1.70215 1.17474 1.27897 1.42283 0.85405 0.77777 0.79821 0.77821 1.20236 1.22182 1.20317 1.20860 0.95177 0.85170 0.92964 0.93056 1.21955 1.00367 0.96023 0.98063 1.21824 1.00122 0.95526 0.98144 1.21807 1.02337 0.94114 0.82872 1.48076 1.48166 1.18478 1.18081 1.17377 0.78319 0.83833 0.82418 1.90724 1.46987 1.24948 1.82578 1.20648 0.98403 1.07766 1.00428 1.25684 0.99511 0.89490 0.82498 1.83929 1.29442 1.47663 1.42078 1.21656 0.86345 1.06074 1.00458 1.16612 0.84225 0.79078 0.81108 1.43420 1.22160 1.49345 1.23174 1.90984 1.20306 1.58121 1.74929 1.22166 1.00866 0.95030 0.93627 1.22825 0.96994 0.81843 1.01360 0.97951 0.96560 0.95156 0.94400 0.92443 0.91913 0.92160 0.87975 0.88713 0.90125 0.71738 0.74629 0.74697 0.82992 0.92054 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 7.89 127.77 1.01 9.86 16 2 N -0.61 -29.69 2.82 -701.51 -1.98 -31.66 16 3 C -0.26 -14.45 9.59 84.03 0.81 -13.65 16 4 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 5 C -0.05 -2.63 5.23 84.86 0.44 -2.18 16 6 N -0.93 -55.69 10.47 21.65 0.23 -55.47 16 7 Si 0.96 45.41 29.56 68.60 2.03 47.44 16 8 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.17 6.56 2.75 45.22 0.12 6.68 16 12 H 0.05 2.15 7.88 -2.39 -0.02 2.13 16 13 C -0.12 -3.96 5.13 30.62 0.16 -3.80 16 14 C -0.12 -2.89 6.08 30.67 0.19 -2.71 16 15 C 0.11 2.82 6.44 86.36 0.56 3.38 16 16 N -0.60 -18.60 2.97 -821.88 -2.44 -21.04 16 17 C 0.59 18.73 7.64 86.68 0.66 19.39 16 18 O -0.57 -19.43 16.44 -4.02 -0.07 -19.49 16 19 C -0.27 -7.73 5.59 -20.07 -0.11 -7.84 16 20 C 0.10 2.10 12.04 67.72 0.82 2.91 16 21 O -0.14 -2.94 10.32 -0.76 -0.01 -2.95 16 22 C -0.09 -2.67 7.09 24.00 0.17 -2.50 16 23 C 0.61 17.79 8.06 86.48 0.70 18.49 16 24 N -0.82 -14.43 8.87 -176.33 -1.56 -15.99 16 25 O -0.56 -22.46 17.68 -4.30 -0.08 -22.54 16 26 C -0.10 -3.09 8.14 22.63 0.18 -2.91 16 27 C 0.09 3.42 4.63 86.51 0.40 3.82 16 28 H 0.00 0.12 7.34 -2.39 -0.02 0.10 16 29 H 0.02 0.85 7.27 -2.39 -0.02 0.84 16 30 H 0.03 1.25 6.46 -2.39 -0.02 1.24 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.96 6.72 -2.39 -0.02 1.94 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.39 7.00 -2.39 -0.02 2.37 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.27 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.42 4.67 8.57 -92.71 -0.79 3.88 16 40 H 0.42 6.05 8.93 -92.71 -0.83 5.22 16 41 H 0.15 5.55 6.45 -2.91 -0.02 5.53 16 42 H 0.06 2.28 7.53 -2.39 -0.02 2.26 16 43 H 0.08 3.26 4.09 -2.39 -0.01 3.25 16 Total: -1.00 -75.38 351.74 1.68 -73.70 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.54 Total: 19.05 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 6.10 Total: 28.95 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -5.75 Total: -124.16 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.15 Total: -44.98 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.38 1.68 -73.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.661 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds