Wall clock time and date at job start Tue Mar 31 2020 13:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35520 * 117.00359 * 2 1 4 4 C 1.38824 * 120.89398 * 359.97438 * 3 2 1 5 5 C 1.38712 * 119.20035 * 180.25739 * 4 3 2 6 6 O 1.35518 * 119.47499 * 179.72064 * 5 4 3 7 7 N 1.32598 * 121.05009 * 359.42533 * 5 4 3 8 8 C 1.31611 * 121.97935 * 0.59038 * 7 5 4 9 9 C 1.39548 * 120.66771 * 359.70301 * 8 7 5 10 10 C 1.47344 * 120.55254 * 180.02562 * 9 8 7 11 11 O 1.21613 * 119.99627 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00081 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99877 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47220 * 179.97438 * 13 12 10 15 15 H 1.09008 * 110.88763 * 54.29236 * 14 13 12 16 16 C 1.55151 * 111.00790 * 178.17601 * 14 13 12 17 17 C 1.54323 * 102.94528 * 153.57481 * 16 14 13 18 18 N 1.47027 * 107.26909 * 337.80559 * 17 16 14 19 19 C 1.36939 * 125.64344 * 178.97149 * 18 17 16 20 20 H 1.08009 * 119.99243 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00256 * 359.97438 * 19 18 17 22 22 N 1.31611 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47203 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47263 * 119.99874 * 23 21 19 26 26 H 1.48498 * 109.47298 * 240.00327 * 23 21 19 27 27 C 1.47464 * 108.72221 * 358.98017 * 18 17 16 28 28 H 1.09001 * 109.47142 * 300.00493 * 1 2 3 29 29 H 1.09003 * 109.46497 * 60.00255 * 1 2 3 30 30 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.39605 * 359.97438 * 4 3 2 32 32 H 0.96695 * 113.99953 * 89.99584 * 6 5 4 33 33 H 1.07993 * 119.66487 * 179.72191 * 8 7 5 34 34 H 0.97002 * 120.00477 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.46890 * 299.99498 * 13 12 10 36 36 H 1.08996 * 109.47774 * 59.99586 * 13 12 10 37 37 H 1.08993 * 110.72383 * 271.93888 * 16 14 13 38 38 H 1.09007 * 110.71919 * 35.03502 * 16 14 13 39 39 H 1.08996 * 109.88043 * 97.22780 * 17 16 14 40 40 H 1.09003 * 109.88320 * 218.24230 * 17 16 14 41 41 H 0.97005 * 120.00406 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.34393 * 265.24933 * 27 18 17 43 43 H 1.09001 * 110.40483 * 142.91729 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3066 2.3834 -0.0005 5 6 1.9726 3.6002 -0.0060 6 8 1.2579 4.7516 -0.0123 7 7 3.2975 3.6547 0.0008 8 6 4.0398 2.5679 0.0013 9 6 3.4501 1.3031 0.0010 10 6 4.2836 0.0881 0.0022 11 8 3.7590 -1.0091 0.0023 12 7 5.6272 0.1926 0.0031 13 6 6.4559 -1.0155 0.0037 14 6 7.9339 -0.6201 0.0040 15 1 8.1555 0.0548 0.8309 16 6 8.8453 -1.8749 0.0508 17 6 10.1441 -1.3841 -0.6230 18 7 9.7924 -0.2249 -1.4563 19 6 10.6682 0.5142 -2.2058 20 1 10.3091 1.3508 -2.7868 21 6 12.0174 0.1882 -2.2187 22 7 12.4551 -0.8310 -1.5102 23 14 13.2120 1.1961 -3.2417 24 1 12.4740 2.2787 -3.9409 25 1 14.2429 1.7923 -2.3545 26 1 13.8687 0.3185 -4.2436 27 6 8.3404 0.0103 -1.3513 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2270 2.3513 -0.0014 32 1 1.0497 5.0900 0.8693 33 1 5.1161 2.6558 0.0024 34 1 6.0457 1.0677 0.0026 35 1 6.2371 -1.6057 0.8936 36 1 6.2383 -1.6059 -0.8863 37 1 9.0353 -2.1754 1.0811 38 1 8.4013 -2.6953 -0.5131 39 1 10.8672 -1.0886 0.1371 40 1 10.5619 -2.1766 -1.2439 41 1 13.3980 -1.0586 -1.5190 42 1 7.8166 -0.4817 -2.1708 43 1 8.1276 1.0794 -1.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028808735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:58 Heat of formation + Delta-G solvation = -44.644151 kcal Electronic energy + Delta-G solvation = -26541.197518 eV Core-core repulsion = 22588.345488 eV Total energy + Delta-G solvation = -3952.852031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38356 -39.41648 -39.07550 -37.61899 -37.11752 -34.64918 -32.59459 -31.99778 -31.17664 -29.68077 -28.35842 -27.82686 -25.65801 -24.58225 -23.60915 -23.04153 -20.95286 -19.97086 -19.88382 -19.67197 -18.08067 -17.83502 -17.21296 -16.72969 -16.39554 -15.79149 -15.63205 -15.28618 -15.16188 -14.84696 -14.66550 -14.46182 -13.83374 -13.51876 -13.43361 -13.12918 -12.86140 -12.38602 -12.32733 -12.02019 -11.98104 -11.92193 -11.73364 -11.37285 -10.88586 -10.80142 -10.48787 -10.25981 -10.08058 -9.94423 -9.85942 -9.65713 -9.63209 -9.56707 -9.30078 -8.90750 -8.59315 -6.82057 -5.70330 -3.03760 0.19000 0.81355 2.60625 2.65430 3.09801 3.15374 3.40739 3.46401 3.48749 3.49503 4.07467 4.28317 4.41607 4.50534 4.63193 4.69913 4.83103 4.96661 5.01553 5.09313 5.15895 5.24792 5.35196 5.44015 5.55918 5.70414 5.82289 5.90837 6.06359 6.07546 6.36051 6.43323 6.50853 6.54761 6.68445 6.71019 6.92428 6.98206 7.43151 7.51930 7.57788 7.64357 7.84280 8.22888 8.27113 9.23307 9.83726 10.49609 11.41512 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018329 B = 0.002602 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.254868 B =10757.630479 C =11968.914773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.269 6.269 3 C 0.237 3.763 4 C -0.290 4.290 5 C 0.368 3.632 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.199 3.801 9 C -0.231 4.231 10 C 0.564 3.436 11 O -0.523 6.523 12 N -0.721 5.721 13 C 0.135 3.865 14 C -0.119 4.119 15 H 0.080 0.920 16 C -0.134 4.134 17 C 0.177 3.823 18 N -0.606 5.606 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.141 3.859 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.151 0.849 32 H 0.406 0.594 33 H 0.174 0.826 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.020 0.980 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.955 5.262 7.546 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.181 3.819 4 C -0.313 4.313 5 C 0.191 3.809 6 O -0.288 6.288 7 N -0.250 5.250 8 C 0.040 3.960 9 C -0.238 4.238 10 C 0.350 3.650 11 O -0.399 6.399 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.138 4.138 15 H 0.099 0.901 16 C -0.173 4.173 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.015 3.985 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.265 0.735 33 H 0.191 0.809 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.684 4.993 6.895 26.110 hybrid contribution 0.181 0.463 -0.099 0.507 sum -24.503 5.456 6.796 26.006 Atomic orbital electron populations 1.23290 0.77895 1.04981 1.01606 1.86401 1.21450 1.24522 1.85349 1.19139 0.90853 0.84896 0.87010 1.22099 1.02244 0.91636 1.15274 1.19009 0.86599 0.85023 0.90246 1.84711 1.71193 1.38600 1.34274 1.67231 1.06444 1.33232 1.18054 1.22737 0.99979 0.84857 0.88408 1.20570 0.91478 0.96144 1.15606 1.17595 0.82072 0.88029 0.77303 1.90832 1.72783 1.27255 1.49056 1.45967 1.05461 1.10737 1.75171 1.21418 0.89093 0.86143 1.02203 1.22631 0.91833 0.99321 1.00061 0.90134 1.22853 0.98020 0.95914 1.00551 1.21141 0.90723 0.89504 0.93385 1.44499 1.01236 1.33486 1.54064 1.19107 0.87879 1.08428 1.20164 0.90407 1.24804 0.96957 0.98497 1.00283 1.69973 1.13872 1.29052 1.44073 0.86051 0.81182 0.79171 0.79407 1.20495 1.21772 1.21788 1.21595 0.86849 0.97100 0.92956 0.92197 0.92098 0.87339 0.83102 0.73463 0.80920 0.76574 0.91478 0.91168 0.91976 0.92180 0.93562 0.93916 0.93821 0.96243 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.27 -3.08 8.71 -39.55 -0.34 -3.43 16 3 C 0.24 2.63 6.74 -38.36 -0.26 2.37 16 4 C -0.29 -2.52 9.02 -39.19 -0.35 -2.88 16 5 C 0.37 3.54 7.73 -17.05 -0.13 3.41 16 6 O -0.48 -3.66 13.54 -18.25 -0.25 -3.91 16 7 N -0.53 -5.87 10.36 -13.04 -0.14 -6.00 16 8 C 0.20 2.06 10.71 -17.16 -0.18 1.87 16 9 C -0.23 -2.74 5.90 -104.70 -0.62 -3.36 16 10 C 0.56 7.91 7.76 -12.56 -0.10 7.81 16 11 O -0.52 -9.10 15.28 -16.03 -0.24 -9.34 16 12 N -0.72 -9.10 5.40 -61.41 -0.33 -9.43 16 13 C 0.13 1.90 5.12 -4.04 -0.02 1.88 16 14 C -0.12 -1.92 3.07 -88.47 -0.27 -2.19 16 15 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 16 C -0.13 -2.41 6.42 -24.90 -0.16 -2.57 16 17 C 0.18 4.24 5.37 -3.06 -0.02 4.23 16 18 N -0.61 -15.28 3.40 -170.03 -0.58 -15.86 16 19 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 21 C -0.01 -0.26 5.49 -17.44 -0.10 -0.36 16 22 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.14 2.79 6.56 -2.51 -0.02 2.77 16 28 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 29 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.15 0.89 6.45 -52.49 -0.34 0.55 16 32 H 0.41 0.93 9.06 45.56 0.41 1.34 16 33 H 0.17 1.37 6.41 -52.49 -0.34 1.03 16 34 H 0.40 4.18 6.48 -40.82 -0.26 3.91 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 39 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 40 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -36.42 357.46 -7.34 -43.76 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.01 Total: 0.63 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -1.38 Total: 7.63 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.47 Total: -57.82 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.84 Total: -16.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.42 -7.34 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.883 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds