Wall clock time and date at job start Tue Mar 31 2020 13:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35520 * 117.00359 * 2 1 4 4 C 1.38824 * 120.89398 * 359.97438 * 3 2 1 5 5 C 1.38712 * 119.20035 * 180.25739 * 4 3 2 6 6 O 1.35518 * 119.47499 * 179.72064 * 5 4 3 7 7 N 1.32598 * 121.05009 * 359.42533 * 5 4 3 8 8 C 1.31611 * 121.97935 * 0.59038 * 7 5 4 9 9 C 1.39548 * 120.66771 * 359.70301 * 8 7 5 10 10 C 1.47344 * 120.55254 * 180.02562 * 9 8 7 11 11 O 1.21613 * 119.99627 * 179.97438 * 10 9 8 12 12 N 1.34767 * 120.00081 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99877 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47220 * 179.97438 * 13 12 10 15 15 H 1.09008 * 110.88763 * 54.29236 * 14 13 12 16 16 C 1.55151 * 111.00790 * 178.17601 * 14 13 12 17 17 C 1.54323 * 102.94528 * 153.57481 * 16 14 13 18 18 N 1.47027 * 107.26909 * 337.80559 * 17 16 14 19 19 C 1.36939 * 125.64344 * 178.97149 * 18 17 16 20 20 H 1.08009 * 119.99243 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00256 * 359.97438 * 19 18 17 22 22 N 1.31611 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47203 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47263 * 119.99874 * 23 21 19 26 26 H 1.48498 * 109.47298 * 240.00327 * 23 21 19 27 27 C 1.47464 * 108.72221 * 358.98017 * 18 17 16 28 28 H 1.09001 * 109.47142 * 300.00493 * 1 2 3 29 29 H 1.09003 * 109.46497 * 60.00255 * 1 2 3 30 30 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.39605 * 359.97438 * 4 3 2 32 32 H 0.96695 * 113.99953 * 89.99584 * 6 5 4 33 33 H 1.07993 * 119.66487 * 179.72191 * 8 7 5 34 34 H 0.97002 * 120.00477 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.46890 * 299.99498 * 13 12 10 36 36 H 1.08996 * 109.47774 * 59.99586 * 13 12 10 37 37 H 1.08993 * 110.72383 * 271.93888 * 16 14 13 38 38 H 1.09007 * 110.71919 * 35.03502 * 16 14 13 39 39 H 1.08996 * 109.88043 * 97.22780 * 17 16 14 40 40 H 1.09003 * 109.88320 * 218.24230 * 17 16 14 41 41 H 0.97005 * 120.00406 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.34393 * 265.24933 * 27 18 17 43 43 H 1.09001 * 110.40483 * 142.91729 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3066 2.3834 -0.0005 5 6 1.9726 3.6002 -0.0060 6 8 1.2579 4.7516 -0.0123 7 7 3.2975 3.6547 0.0008 8 6 4.0398 2.5679 0.0013 9 6 3.4501 1.3031 0.0010 10 6 4.2836 0.0881 0.0022 11 8 3.7590 -1.0091 0.0023 12 7 5.6272 0.1926 0.0031 13 6 6.4559 -1.0155 0.0037 14 6 7.9339 -0.6201 0.0040 15 1 8.1555 0.0548 0.8309 16 6 8.8453 -1.8749 0.0508 17 6 10.1441 -1.3841 -0.6230 18 7 9.7924 -0.2249 -1.4563 19 6 10.6682 0.5142 -2.2058 20 1 10.3091 1.3508 -2.7868 21 6 12.0174 0.1882 -2.2187 22 7 12.4551 -0.8310 -1.5102 23 14 13.2120 1.1961 -3.2417 24 1 12.4740 2.2787 -3.9409 25 1 14.2429 1.7923 -2.3545 26 1 13.8687 0.3185 -4.2436 27 6 8.3404 0.0103 -1.3513 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2270 2.3513 -0.0014 32 1 1.0497 5.0900 0.8693 33 1 5.1161 2.6558 0.0024 34 1 6.0457 1.0677 0.0026 35 1 6.2371 -1.6057 0.8936 36 1 6.2383 -1.6059 -0.8863 37 1 9.0353 -2.1754 1.0811 38 1 8.4013 -2.6953 -0.5131 39 1 10.8672 -1.0886 0.1371 40 1 10.5619 -2.1766 -1.2439 41 1 13.3980 -1.0586 -1.5190 42 1 7.8166 -0.4817 -2.1708 43 1 8.1276 1.0794 -1.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028808735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:57 Heat of formation + Delta-G solvation = -74.134104 kcal Electronic energy + Delta-G solvation = -26542.476299 eV Core-core repulsion = 22588.345488 eV Total energy + Delta-G solvation = -3954.130811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14633 -40.46325 -39.78265 -39.14986 -37.82217 -36.01565 -34.32937 -32.79764 -32.17060 -31.29262 -29.79348 -28.50220 -27.27968 -25.79767 -24.73743 -23.94328 -22.20500 -21.60002 -21.23415 -20.34311 -19.13509 -18.63588 -18.61413 -17.88601 -17.17424 -16.96457 -16.63958 -16.44473 -16.18821 -15.98774 -15.80957 -15.56479 -15.38090 -14.64846 -14.60091 -14.14983 -13.90846 -13.79553 -13.69038 -13.38008 -13.00293 -12.98035 -12.73916 -12.63611 -12.55616 -12.48696 -11.96307 -11.88840 -11.82914 -11.51787 -11.42619 -11.20833 -10.69374 -10.56229 -10.29601 -10.19149 -9.89123 -8.86936 -7.83035 -5.18110 -0.56340 0.08342 1.47428 1.48148 1.58467 1.73880 2.02504 2.10862 2.46490 2.51263 2.67591 3.35481 3.40743 3.55845 3.64015 3.65174 3.85236 4.05190 4.06417 4.10647 4.19581 4.32580 4.32907 4.41322 4.48823 4.61522 4.66316 4.72013 4.77043 4.86356 4.96379 5.09396 5.12048 5.17150 5.36769 5.48745 5.49925 5.70998 5.81371 6.07517 6.22781 6.49958 6.54215 6.75668 7.13065 7.20799 7.80927 8.45076 9.27735 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018329 B = 0.002602 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.254868 B =10757.630479 C =11968.914773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.300 6.300 3 C 0.228 3.772 4 C -0.280 4.280 5 C 0.370 3.630 6 O -0.485 6.485 7 N -0.550 5.550 8 C 0.206 3.794 9 C -0.254 4.254 10 C 0.566 3.434 11 O -0.563 6.563 12 N -0.713 5.713 13 C 0.147 3.853 14 C -0.096 4.096 15 H 0.093 0.907 16 C -0.122 4.122 17 C 0.183 3.817 18 N -0.629 5.629 19 C -0.238 4.238 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.295 1.295 27 C 0.136 3.864 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.429 0.571 33 H 0.192 0.808 34 H 0.410 0.590 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.013 0.987 40 H 0.002 0.998 41 H 0.246 0.754 42 H 0.017 0.983 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.148 6.888 7.965 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.208 6.208 3 C 0.172 3.828 4 C -0.302 4.302 5 C 0.194 3.806 6 O -0.296 6.296 7 N -0.273 5.273 8 C 0.047 3.953 9 C -0.260 4.260 10 C 0.354 3.646 11 O -0.442 6.442 12 N -0.366 5.366 13 C 0.023 3.977 14 C -0.115 4.115 15 H 0.112 0.888 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.356 5.356 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.189 1.189 25 H -0.219 1.219 26 H -0.222 1.222 27 C 0.011 3.989 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.197 0.803 32 H 0.292 0.708 33 H 0.208 0.792 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.929 6.670 7.330 28.695 hybrid contribution 0.739 0.008 -0.239 0.776 sum -26.190 6.679 7.091 27.943 Atomic orbital electron populations 1.23603 0.75557 1.06252 1.03264 1.86364 1.24051 1.25121 1.85283 1.19350 0.90897 0.85602 0.86950 1.22262 1.03471 0.90348 1.14106 1.19204 0.86407 0.85875 0.89161 1.84665 1.70725 1.37892 1.36368 1.67288 1.07408 1.33464 1.19138 1.22955 1.00787 0.84164 0.87407 1.20491 0.91919 0.95622 1.17987 1.17879 0.82233 0.88228 0.76265 1.90805 1.73480 1.28827 1.51098 1.45831 1.05160 1.10851 1.74717 1.21173 0.87634 0.86653 1.02236 1.22434 0.92704 0.98107 0.98282 0.88839 1.22714 0.95181 0.96857 1.01369 1.20912 0.93074 0.88222 0.92026 1.44830 1.03354 1.33548 1.53820 1.19516 0.88646 1.08549 1.20041 0.89825 1.25650 0.98787 0.99861 1.01904 1.70196 1.13637 1.30697 1.45686 0.85026 0.78816 0.77913 0.77691 1.18859 1.21874 1.22244 1.21793 0.83875 0.98384 0.94840 0.90138 0.90722 0.86454 0.80292 0.70757 0.79159 0.75214 0.90472 0.92233 0.89536 0.91132 0.96881 0.97939 0.94508 0.96472 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.30 -6.55 8.71 -67.87 -0.59 -7.14 16 3 C 0.23 4.74 6.74 23.06 0.16 4.90 16 4 C -0.28 -4.20 9.02 22.52 0.20 -3.99 16 5 C 0.37 6.26 7.73 84.69 0.65 6.91 16 6 O -0.48 -6.06 13.54 -88.21 -1.19 -7.26 16 7 N -0.55 -11.19 10.36 -307.95 -3.19 -14.38 16 8 C 0.21 3.92 10.71 85.04 0.91 4.83 16 9 C -0.25 -5.71 5.90 -19.91 -0.12 -5.83 16 10 C 0.57 15.34 7.76 86.64 0.67 16.01 16 11 O -0.56 -19.40 15.28 16.29 0.25 -19.15 16 12 N -0.71 -16.76 5.40 -466.47 -2.52 -19.28 16 13 C 0.15 3.87 5.12 86.38 0.44 4.32 16 14 C -0.10 -2.91 3.07 -9.40 -0.03 -2.94 16 15 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 16 C -0.12 -4.27 6.42 31.78 0.20 -4.06 16 17 C 0.18 8.97 5.37 86.73 0.47 9.44 16 18 N -0.63 -31.93 3.40 -691.87 -2.35 -34.28 16 19 C -0.24 -13.32 10.28 84.03 0.86 -12.45 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 22 N -0.95 -57.84 10.31 21.65 0.22 -57.62 16 23 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 27 C 0.14 5.21 6.56 86.85 0.57 5.78 16 28 H 0.08 0.48 7.71 -2.39 -0.02 0.47 16 29 H 0.07 0.55 7.70 -2.39 -0.02 0.54 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.18 1.50 6.45 -2.91 -0.02 1.49 16 32 H 0.43 0.69 9.06 -74.06 -0.67 0.02 16 33 H 0.19 2.64 6.41 -2.91 -0.02 2.62 16 34 H 0.41 7.69 6.48 -92.71 -0.60 7.08 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.74 8.03 -2.39 -0.02 1.72 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.32 8.04 -2.38 -0.02 2.30 16 39 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 40 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 41 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.02 0.68 7.96 -2.39 -0.02 0.67 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.92 357.46 -0.98 -81.90 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.21 Total: 8.59 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.58 Total: 20.59 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -7.84 Total: -125.57 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.54 Total: -33.54 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -80.92 -0.98 -81.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.767 kcal (2) G-P(sol) polarization free energy of solvation -80.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds