Wall clock time and date at job start Tue Mar 31 2020 13:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35509 * 116.99809 * 2 1 4 4 C 1.39207 * 120.90022 * 0.22700 * 3 2 1 5 5 C 1.37905 * 119.39340 * 180.25340 * 4 3 2 6 6 N 1.32081 * 121.28452 * 359.76890 * 5 4 3 7 7 C 1.32183 * 121.98155 * 359.97438 * 6 5 4 8 8 O 1.35427 * 119.77770 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44607 * 359.97438 * 7 6 5 10 10 C 1.47233 * 120.65317 * 180.02562 * 9 7 6 11 11 O 1.21623 * 120.00211 * 89.99883 * 10 9 7 12 12 N 1.34777 * 119.99759 * 269.72537 * 10 9 7 13 13 C 1.46499 * 120.00195 * 180.27773 * 12 10 9 14 14 C 1.52990 * 109.47304 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.64171 * 305.69305 * 14 13 12 16 16 C 1.55158 * 110.72340 * 182.55824 * 14 13 12 17 17 C 1.54905 * 101.58695 * 206.13287 * 16 14 13 18 18 N 1.47430 * 104.82905 * 37.00553 * 17 16 14 19 19 C 1.36941 * 125.64696 * 155.90957 * 18 17 16 20 20 H 1.07995 * 120.00033 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99838 * 359.97102 * 19 18 17 22 22 N 1.31620 * 120.00512 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47014 * 90.00483 * 23 21 19 25 25 H 1.48497 * 109.47297 * 210.00161 * 23 21 19 26 26 H 1.48493 * 109.47429 * 330.00436 * 23 21 19 27 27 C 1.47314 * 108.73719 * 335.71572 * 18 17 16 28 28 H 1.09000 * 109.47412 * 299.99568 * 1 2 3 29 29 H 1.08994 * 109.47415 * 60.00338 * 1 2 3 30 30 H 1.09005 * 109.46523 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.30322 * 0.04392 * 4 3 2 32 32 H 1.07998 * 119.35944 * 179.74534 * 5 4 3 33 33 H 0.96702 * 113.99916 * 269.97678 * 8 7 6 34 34 H 0.97000 * 119.99736 * 0.27045 * 12 10 9 35 35 H 1.08998 * 109.46795 * 299.99885 * 13 12 10 36 36 H 1.08997 * 109.47029 * 59.99499 * 13 12 10 37 37 H 1.09003 * 111.00345 * 324.21140 * 16 14 13 38 38 H 1.09004 * 111.00767 * 88.01517 * 16 14 13 39 39 H 1.09002 * 110.36970 * 155.84247 * 17 16 14 40 40 H 1.09003 * 110.36786 * 278.06480 * 17 16 14 41 41 H 0.96996 * 120.00695 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.06933 * 241.86938 * 27 18 17 43 43 H 1.09000 * 109.85146 * 120.61041 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3866 0.0047 5 6 1.9624 3.5985 -0.0007 6 7 3.2817 3.6626 -0.0058 7 6 4.0354 2.5767 -0.0054 8 8 5.3845 2.6943 -0.0103 9 6 3.4471 1.3031 0.0010 10 6 4.2822 0.0905 0.0020 11 8 4.6310 -0.4068 1.0557 12 7 4.6555 -0.4716 -1.1647 13 6 5.4814 -1.6816 -1.1637 14 6 5.7602 -2.1099 -2.6057 15 1 4.8285 -2.2220 -3.1603 16 6 6.5802 -3.4267 -2.6386 17 6 7.3051 -3.3079 -4.0024 18 7 7.6325 -1.8763 -4.1322 19 6 8.6404 -1.3544 -4.8985 20 1 8.7995 -0.2866 -4.9270 21 6 9.4574 -2.1979 -5.6386 22 7 9.2633 -3.4993 -5.6042 23 14 10.8327 -1.4861 -6.6833 24 1 12.0750 -1.3999 -5.8743 25 1 11.0669 -2.3638 -7.8580 26 1 10.4495 -0.1288 -7.1481 27 6 6.6935 -1.0991 -3.3050 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2248 2.3527 0.0092 32 1 1.3880 4.5130 -0.0012 33 1 5.7734 2.7258 -0.8951 34 1 4.3772 -0.0749 -2.0050 35 1 6.4241 -1.4775 -0.6562 36 1 4.9541 -2.4809 -0.6431 37 1 7.2961 -3.4617 -1.8173 38 1 5.9235 -4.2965 -2.6189 39 1 8.2158 -3.9068 -4.0014 40 1 6.6456 -3.6227 -4.8112 41 1 9.8340 -4.0887 -6.1217 42 1 6.1085 -0.4278 -3.9336 43 1 7.2442 -0.5259 -2.5592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028934278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:01 Heat of formation + Delta-G solvation = -44.231275 kcal Electronic energy + Delta-G solvation = -27002.684066 eV Core-core repulsion = 23049.849939 eV Total energy + Delta-G solvation = -3952.834127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37550 -39.38381 -39.05835 -37.58421 -37.06457 -34.61805 -32.68381 -32.08405 -30.93023 -29.74490 -28.29887 -27.93744 -25.80901 -24.73062 -23.31106 -23.16523 -20.98979 -20.08722 -19.75512 -19.48092 -17.99801 -17.82674 -17.45608 -16.80496 -16.47854 -15.92659 -15.64903 -15.40183 -15.11800 -14.81433 -14.69829 -14.23065 -13.95436 -13.64816 -13.42202 -13.09013 -12.66482 -12.51940 -12.14969 -12.06322 -11.93210 -11.78201 -11.70388 -11.49711 -10.96299 -10.80676 -10.55245 -10.31144 -10.12800 -10.02634 -9.86281 -9.70396 -9.50034 -9.42188 -9.32104 -8.97159 -8.65930 -6.84738 -5.66367 -3.08171 0.41172 0.78705 2.47193 2.53774 3.00798 3.23127 3.39566 3.41224 3.44446 3.46279 4.13196 4.39614 4.47507 4.52648 4.57072 4.64749 4.68488 4.99683 5.02020 5.15356 5.19447 5.26178 5.39583 5.44904 5.52071 5.69507 5.80843 5.88141 6.07345 6.11399 6.33575 6.42487 6.52814 6.58306 6.62184 6.70695 6.89371 7.13691 7.48746 7.50342 7.51868 7.61176 7.84781 8.19715 8.35427 9.20988 9.81859 10.46692 11.37597 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002881 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.407350 B = 9718.166509 C =10525.385068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.216 3.784 4 C -0.276 4.276 5 C 0.174 3.826 6 N -0.523 5.523 7 C 0.386 3.614 8 O -0.469 6.469 9 C -0.230 4.230 10 C 0.581 3.419 11 O -0.526 6.526 12 N -0.714 5.714 13 C 0.132 3.868 14 C -0.114 4.114 15 H 0.075 0.925 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.141 3.859 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.410 0.590 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.011 0.989 41 H 0.252 0.748 42 H 0.017 0.983 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 9.600 9.620 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.161 3.839 4 C -0.297 4.297 5 C 0.018 3.982 6 N -0.246 5.246 7 C 0.206 3.794 8 O -0.277 6.277 9 C -0.237 4.237 10 C 0.364 3.636 11 O -0.402 6.402 12 N -0.365 5.365 13 C 0.009 3.991 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.015 3.985 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.271 0.729 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -19.681 9.677 10.817 24.454 hybrid contribution -0.123 -0.059 -1.471 1.477 sum -19.803 9.618 9.346 23.917 Atomic orbital electron populations 1.23253 0.76916 1.05006 1.01908 1.86110 1.22511 1.25650 1.86604 1.19073 0.90225 0.85278 0.89321 1.22166 1.01959 0.92588 1.13020 1.22434 0.88656 0.97333 0.89824 1.67326 1.07265 1.32122 1.17856 1.18811 0.84859 0.85416 0.90267 1.84738 1.13581 1.95054 1.34348 1.20314 0.91767 0.95755 1.15902 1.17452 0.79275 0.82562 0.84282 1.90814 1.55227 1.62883 1.31282 1.46036 1.53293 1.29245 1.07921 1.21507 0.94689 0.85501 0.97365 1.22445 0.99172 0.98188 0.93560 0.90637 1.23006 0.98314 0.94417 1.01677 1.21925 0.99311 0.86579 0.89443 1.44576 1.33826 1.01954 1.52720 1.19073 1.05297 0.91942 1.18842 0.90535 1.24789 0.99817 0.95537 1.00545 1.69793 1.40749 1.01565 1.44978 0.86073 0.82008 0.77774 0.79642 1.21551 1.21667 1.20760 1.21384 0.90903 0.93149 0.93066 0.91944 0.91847 0.87394 0.83334 0.81444 0.72936 0.76584 0.90954 0.91510 0.91769 0.92117 0.87522 0.97059 0.93717 0.96483 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.30 -3.07 10.03 -18.22 -0.18 -3.25 16 3 C 0.22 2.29 6.74 -38.32 -0.26 2.03 16 4 C -0.28 -2.06 9.09 -39.34 -0.36 -2.42 16 5 C 0.17 1.39 11.15 -17.57 -0.20 1.19 16 6 N -0.52 -5.96 10.37 -13.06 -0.14 -6.09 16 7 C 0.39 4.83 7.77 -16.63 -0.13 4.70 16 8 O -0.47 -5.80 13.01 -17.97 -0.23 -6.03 16 9 C -0.23 -2.97 5.66 -104.57 -0.59 -3.56 16 10 C 0.58 8.89 6.42 -12.61 -0.08 8.81 16 11 O -0.53 -10.21 17.11 5.26 0.09 -10.12 16 12 N -0.71 -9.66 5.43 -61.45 -0.33 -9.99 16 13 C 0.13 1.99 5.00 -4.05 -0.02 1.97 16 14 C -0.11 -1.88 2.98 -88.79 -0.26 -2.15 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.13 -2.49 6.54 -24.58 -0.16 -2.65 16 17 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 18 N -0.60 -15.27 3.40 -169.84 -0.58 -15.84 16 19 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.14 2.80 6.66 -2.90 -0.02 2.78 16 28 H 0.06 0.24 7.70 -51.93 -0.40 -0.16 16 29 H 0.06 0.22 7.72 -51.93 -0.40 -0.18 16 30 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.15 0.60 6.45 -52.48 -0.34 0.26 16 32 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.41 3.22 9.06 45.56 0.41 3.63 16 34 H 0.40 4.61 8.39 -40.82 -0.34 4.26 16 35 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -36.55 361.82 -6.85 -43.40 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.11 Total: 3.02 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.35 Total: 8.71 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.49 Total: -58.13 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.33 Total: -19.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.55 -6.85 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028934278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.835 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds