Wall clock time and date at job start Tue Mar 31 2020 13:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35509 * 116.99809 * 2 1 4 4 C 1.39207 * 120.90022 * 0.22700 * 3 2 1 5 5 C 1.37905 * 119.39340 * 180.25340 * 4 3 2 6 6 N 1.32081 * 121.28452 * 359.76890 * 5 4 3 7 7 C 1.32183 * 121.98155 * 359.97438 * 6 5 4 8 8 O 1.35427 * 119.77770 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44607 * 359.97438 * 7 6 5 10 10 C 1.47233 * 120.65317 * 180.02562 * 9 7 6 11 11 O 1.21623 * 120.00211 * 89.99883 * 10 9 7 12 12 N 1.34777 * 119.99759 * 269.72537 * 10 9 7 13 13 C 1.46499 * 120.00195 * 180.27773 * 12 10 9 14 14 C 1.52990 * 109.47304 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.64171 * 305.69305 * 14 13 12 16 16 C 1.55158 * 110.72340 * 182.55824 * 14 13 12 17 17 C 1.54905 * 101.58695 * 206.13287 * 16 14 13 18 18 N 1.47430 * 104.82905 * 37.00553 * 17 16 14 19 19 C 1.36941 * 125.64696 * 155.90957 * 18 17 16 20 20 H 1.07995 * 120.00033 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99838 * 359.97102 * 19 18 17 22 22 N 1.31620 * 120.00512 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47014 * 90.00483 * 23 21 19 25 25 H 1.48497 * 109.47297 * 210.00161 * 23 21 19 26 26 H 1.48493 * 109.47429 * 330.00436 * 23 21 19 27 27 C 1.47314 * 108.73719 * 335.71572 * 18 17 16 28 28 H 1.09000 * 109.47412 * 299.99568 * 1 2 3 29 29 H 1.08994 * 109.47415 * 60.00338 * 1 2 3 30 30 H 1.09005 * 109.46523 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.30322 * 0.04392 * 4 3 2 32 32 H 1.07998 * 119.35944 * 179.74534 * 5 4 3 33 33 H 0.96702 * 113.99916 * 269.97678 * 8 7 6 34 34 H 0.97000 * 119.99736 * 0.27045 * 12 10 9 35 35 H 1.08998 * 109.46795 * 299.99885 * 13 12 10 36 36 H 1.08997 * 109.47029 * 59.99499 * 13 12 10 37 37 H 1.09003 * 111.00345 * 324.21140 * 16 14 13 38 38 H 1.09004 * 111.00767 * 88.01517 * 16 14 13 39 39 H 1.09002 * 110.36970 * 155.84247 * 17 16 14 40 40 H 1.09003 * 110.36786 * 278.06480 * 17 16 14 41 41 H 0.96996 * 120.00695 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.06933 * 241.86938 * 27 18 17 43 43 H 1.09000 * 109.85146 * 120.61041 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3866 0.0047 5 6 1.9624 3.5985 -0.0007 6 7 3.2817 3.6626 -0.0058 7 6 4.0354 2.5767 -0.0054 8 8 5.3845 2.6943 -0.0103 9 6 3.4471 1.3031 0.0010 10 6 4.2822 0.0905 0.0020 11 8 4.6310 -0.4068 1.0557 12 7 4.6555 -0.4716 -1.1647 13 6 5.4814 -1.6816 -1.1637 14 6 5.7602 -2.1099 -2.6057 15 1 4.8285 -2.2220 -3.1603 16 6 6.5802 -3.4267 -2.6386 17 6 7.3051 -3.3079 -4.0024 18 7 7.6325 -1.8763 -4.1322 19 6 8.6404 -1.3544 -4.8985 20 1 8.7995 -0.2866 -4.9270 21 6 9.4574 -2.1979 -5.6386 22 7 9.2633 -3.4993 -5.6042 23 14 10.8327 -1.4861 -6.6833 24 1 12.0750 -1.3999 -5.8743 25 1 11.0669 -2.3638 -7.8580 26 1 10.4495 -0.1288 -7.1481 27 6 6.6935 -1.0991 -3.3050 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2248 2.3527 0.0092 32 1 1.3880 4.5130 -0.0012 33 1 5.7734 2.7258 -0.8951 34 1 4.3772 -0.0749 -2.0050 35 1 6.4241 -1.4775 -0.6562 36 1 4.9541 -2.4809 -0.6431 37 1 7.2961 -3.4617 -1.8173 38 1 5.9235 -4.2965 -2.6189 39 1 8.2158 -3.9068 -4.0014 40 1 6.6456 -3.6227 -4.8112 41 1 9.8340 -4.0887 -6.1217 42 1 6.1085 -0.4278 -3.9336 43 1 7.2442 -0.5259 -2.5592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028934278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:00 Heat of formation + Delta-G solvation = -75.387483 kcal Electronic energy + Delta-G solvation = -27004.035100 eV Core-core repulsion = 23049.849939 eV Total energy + Delta-G solvation = -3954.185162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16600 -40.46900 -39.86095 -39.17380 -37.85944 -36.08725 -34.36222 -33.05880 -31.78070 -31.39164 -29.83661 -28.45163 -27.40739 -26.01087 -24.65059 -23.91217 -22.33664 -21.65647 -21.19451 -20.28253 -19.07555 -18.71053 -18.59391 -18.24551 -17.42322 -17.00276 -16.76829 -16.56438 -16.31962 -15.83268 -15.65264 -15.57779 -15.43129 -14.85779 -14.28770 -14.26654 -14.14568 -13.62989 -13.54619 -13.37852 -13.14315 -12.94656 -12.82438 -12.66537 -12.55362 -12.48935 -12.01681 -11.96031 -11.83119 -11.61116 -11.46196 -11.27730 -10.73664 -10.60482 -10.19469 -10.16543 -10.04763 -8.87505 -7.76833 -5.20871 -0.32293 0.06649 1.40194 1.47014 1.48895 1.57207 1.87227 2.04267 2.42680 2.50053 2.68049 3.32880 3.45966 3.61817 3.72587 3.76825 3.84238 3.90865 3.97017 4.06155 4.30741 4.33257 4.38014 4.43696 4.49499 4.63805 4.69405 4.74447 4.78678 4.84238 4.90472 5.03922 5.12319 5.23633 5.28865 5.39378 5.48499 5.66206 5.83232 6.04406 6.32302 6.36639 6.44411 6.79383 7.07037 7.11857 7.79535 8.43081 9.25161 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002881 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.407350 B = 9718.166509 C =10525.385068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.210 3.790 4 C -0.259 4.259 5 C 0.176 3.824 6 N -0.545 5.545 7 C 0.374 3.626 8 O -0.489 6.489 9 C -0.258 4.258 10 C 0.585 3.415 11 O -0.576 6.576 12 N -0.702 5.702 13 C 0.144 3.856 14 C -0.093 4.093 15 H 0.096 0.904 16 C -0.122 4.122 17 C 0.153 3.847 18 N -0.629 5.629 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.138 3.862 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.190 0.810 32 H 0.210 0.790 33 H 0.423 0.577 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.071 0.929 40 H -0.009 1.009 41 H 0.247 0.753 42 H 0.030 0.970 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.373 11.266 9.739 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.155 3.845 4 C -0.279 4.279 5 C 0.021 3.979 6 N -0.268 5.268 7 C 0.195 3.805 8 O -0.300 6.300 9 C -0.266 4.266 10 C 0.370 3.630 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.020 3.980 14 C -0.112 4.112 15 H 0.114 0.886 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.355 5.355 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.807 3.193 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.013 3.987 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.207 0.793 32 H 0.226 0.774 33 H 0.286 0.714 34 H 0.248 0.752 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.009 0.991 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -22.495 11.375 10.913 27.468 hybrid contribution 0.622 -0.543 -1.505 1.716 sum -21.873 10.832 9.409 26.159 Atomic orbital electron populations 1.23614 0.74398 1.06402 1.03727 1.86081 1.25185 1.25869 1.86432 1.19254 0.89591 0.86560 0.89087 1.22559 1.03724 0.90969 1.10660 1.23210 0.87717 0.99238 0.87708 1.67393 1.08925 1.31616 1.18881 1.18895 0.84826 0.85731 0.91065 1.84688 1.14315 1.95149 1.35841 1.20208 0.92847 0.94544 1.18980 1.17824 0.78658 0.82874 0.83616 1.90776 1.57270 1.64595 1.32939 1.45897 1.52476 1.28601 1.08293 1.21262 0.94366 0.86357 0.96001 1.22271 0.98828 0.95877 0.94212 0.88582 1.22850 0.98513 0.96713 0.98078 1.21715 0.97873 0.85786 0.91844 1.44897 1.34414 1.03144 1.53028 1.19460 1.05984 0.92345 1.18941 0.90132 1.25625 1.02287 0.95977 1.02184 1.70050 1.41559 1.02601 1.45703 0.85065 0.79015 0.77461 0.77718 1.21427 1.22039 1.19397 1.21553 0.90722 0.93748 0.92688 0.90327 0.89682 0.86452 0.79285 0.77387 0.71445 0.75215 0.92629 0.90750 0.91962 0.89216 0.91148 0.99116 0.94372 0.95180 0.95829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.83 113.37 1.11 1.20 16 2 O -0.33 -6.02 10.03 -88.11 -0.88 -6.90 16 3 C 0.21 4.04 6.74 23.09 0.16 4.20 16 4 C -0.26 -2.91 9.09 22.42 0.20 -2.71 16 5 C 0.18 2.22 11.15 84.58 0.94 3.16 16 6 N -0.55 -11.53 10.37 -308.27 -3.20 -14.73 16 7 C 0.37 9.22 7.77 85.14 0.66 9.88 16 8 O -0.49 -12.34 13.01 -87.22 -1.14 -13.48 16 9 C -0.26 -6.52 5.66 -19.83 -0.11 -6.63 16 10 C 0.58 17.91 6.42 86.61 0.56 18.47 16 11 O -0.58 -22.84 17.11 -4.10 -0.07 -22.91 16 12 N -0.70 -18.44 5.43 -466.59 -2.53 -20.98 16 13 C 0.14 4.19 5.00 86.38 0.43 4.62 16 14 C -0.09 -2.91 2.98 -9.61 -0.03 -2.94 16 15 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 16 C -0.12 -4.41 6.54 31.99 0.21 -4.21 16 17 C 0.15 7.46 5.89 86.85 0.51 7.97 16 18 N -0.63 -32.08 3.40 -691.24 -2.35 -34.43 16 19 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 22 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 23 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.14 5.38 6.66 86.67 0.58 5.96 16 28 H 0.08 0.30 7.70 -2.39 -0.02 0.28 16 29 H 0.08 0.23 7.72 -2.39 -0.02 0.21 16 30 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.19 0.48 6.45 -2.91 -0.02 0.46 16 32 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.42 6.89 9.06 -74.06 -0.67 6.22 16 34 H 0.41 8.93 8.39 -92.71 -0.78 8.15 16 35 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 38 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 39 H 0.07 3.97 5.88 -2.39 -0.01 3.95 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 0.94 7.73 -2.39 -0.02 0.92 16 Total: -1.00 -82.64 361.82 -1.76 -84.40 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.39 Total: 14.69 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 6.55 Total: 23.08 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -7.86 Total: -126.63 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.09 Total: -43.30 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -82.64 -1.76 -84.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028934278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.008 kcal (2) G-P(sol) polarization free energy of solvation -82.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds