Wall clock time and date at job start Tue Mar 31 2020 13:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47227 * 2 1 4 4 C 1.35346 * 117.00346 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44983 * 180.02562 * 4 3 2 6 6 C 1.36338 * 108.38366 * 179.78124 * 5 4 3 7 7 C 1.47374 * 126.41195 * 180.28858 * 6 5 4 8 8 O 1.21623 * 119.99401 * 186.41182 * 7 6 5 9 9 N 1.34771 * 119.99862 * 6.40872 * 7 6 5 10 10 C 1.47166 * 120.71341 * 6.66848 * 9 7 6 11 11 C 1.53884 * 108.02715 * 132.75333 * 10 9 7 12 12 H 1.09000 * 112.09618 * 181.91704 * 11 10 9 13 13 C 1.54552 * 107.83274 * 306.50789 * 11 10 9 14 14 C 1.54285 * 104.85020 * 89.07855 * 13 11 10 15 15 C 1.54544 * 104.84630 * 359.97438 * 14 13 11 16 16 H 1.09001 * 112.18465 * 146.41451 * 15 14 13 17 17 C 1.47172 * 120.70610 * 186.38674 * 9 7 6 18 18 N 1.48308 * 104.36124 * 24.70890 * 15 14 13 19 19 C 1.36931 * 128.08060 * 139.10840 * 18 15 14 20 20 H 1.08003 * 120.00146 * 200.12869 * 19 18 15 21 21 C 1.38809 * 120.00160 * 20.14209 * 19 18 15 22 22 N 1.31621 * 119.99768 * 355.86931 * 21 19 18 23 23 Si 1.86798 * 120.00561 * 175.87998 * 21 19 18 24 24 H 1.48502 * 109.46666 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47420 * 119.99151 * 23 21 19 26 26 H 1.48495 * 109.47241 * 240.00016 * 23 21 19 27 27 C 1.35913 * 107.17411 * 0.38310 * 6 5 4 28 28 O 1.34205 * 125.44553 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47365 * 300.00298 * 1 2 3 30 30 H 1.09009 * 109.47266 * 59.99744 * 1 2 3 31 31 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46878 * 240.00291 * 2 1 3 33 33 H 1.08996 * 109.47057 * 120.00180 * 2 1 3 34 34 H 1.09000 * 109.74926 * 252.38102 * 10 9 7 35 35 H 1.08993 * 109.74951 * 13.06860 * 10 9 7 36 36 H 1.08991 * 110.36365 * 207.92250 * 13 11 10 37 37 H 1.08997 * 110.36400 * 330.24333 * 13 11 10 38 38 H 1.09004 * 110.36398 * 241.15635 * 14 13 11 39 39 H 1.09002 * 110.36663 * 118.83741 * 14 13 11 40 40 H 1.08996 * 109.74864 * 346.87884 * 17 9 7 41 41 H 1.08994 * 109.74693 * 107.60903 * 17 9 7 42 42 H 0.96998 * 120.00172 * 179.97438 * 22 21 19 43 43 H 1.07998 * 126.45466 * 179.88009 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3481 1.5246 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4523 0.0040 7 6 6.3630 3.4770 0.0118 8 8 7.5283 3.1479 -0.1027 9 7 6.0403 4.7787 0.1458 10 6 4.6546 5.1840 0.4310 11 6 4.6849 6.2095 1.5779 12 1 3.6843 6.5312 1.8668 13 6 5.4718 5.5838 2.7517 14 6 6.9421 5.9748 2.4951 15 6 6.9101 6.8007 1.1893 16 1 7.6627 7.5891 1.1824 17 6 7.0674 5.8248 0.0162 18 7 5.5307 7.3424 1.1303 19 6 5.1311 8.5960 0.7509 20 1 4.1632 8.9686 1.0522 21 6 5.9700 9.3878 -0.0212 22 7 7.1807 8.9671 -0.3204 23 14 5.3807 11.0506 -0.6355 24 1 3.9923 11.2883 -0.1653 25 1 6.2711 12.1164 -0.1097 26 1 5.4100 11.0686 -2.1200 27 6 5.4846 1.1053 -0.0025 28 8 4.2630 0.5427 -0.0016 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.2133 5.6372 -0.4567 35 1 4.0703 4.3137 0.7294 36 1 5.1296 5.9966 3.7006 37 1 5.3615 4.4994 2.7470 38 1 7.5546 5.0827 2.3643 39 1 7.3228 6.5801 3.3179 40 1 8.0589 5.3730 0.0446 41 1 6.9322 6.3590 -0.9242 42 1 7.7668 9.5202 -0.8602 43 1 6.4309 0.5847 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029379327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:15 Heat of formation + Delta-G solvation = 10.519505 kcal Electronic energy + Delta-G solvation = -28271.400146 eV Core-core repulsion = 24320.940191 eV Total energy + Delta-G solvation = -3950.459955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.48875 -39.86412 -39.12947 -37.67459 -35.07715 -33.54315 -32.32176 -32.23430 -30.50524 -29.53596 -29.16143 -26.38634 -24.54047 -23.90957 -23.73636 -22.94180 -22.20562 -20.29084 -19.58030 -19.04626 -18.09038 -17.69435 -17.25975 -16.51670 -16.07710 -15.85587 -15.33121 -15.08937 -14.94055 -14.57649 -13.80738 -13.56774 -13.48696 -13.26278 -13.16081 -12.96769 -12.77281 -12.70367 -12.15110 -11.86515 -11.69308 -11.57555 -11.46991 -11.06566 -10.93782 -10.89238 -10.80907 -10.28738 -10.25289 -9.96160 -9.81280 -9.68207 -9.41908 -9.25216 -8.76093 -8.65509 -7.95955 -6.70658 -5.77983 -3.16473 1.15298 1.77327 2.09668 2.62289 3.39234 3.45970 3.47747 3.54044 3.63312 4.40160 4.40239 4.43288 4.52674 4.71919 4.88202 4.98790 5.27179 5.29560 5.32150 5.41381 5.45585 5.59208 5.68797 5.78590 5.86524 5.88427 6.09927 6.24604 6.40371 6.44308 6.56571 6.60449 6.70209 6.77294 6.85945 6.93627 6.99906 7.10183 7.36461 7.48858 7.62232 7.77129 8.12559 8.24597 8.64085 9.13076 9.74033 10.53634 11.33848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003725 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.427827 B = 7515.145188 C = 8312.528932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.245 6.245 4 C 0.375 3.625 5 N -0.444 5.444 6 C -0.030 4.030 7 C 0.585 3.415 8 O -0.556 6.556 9 N -0.567 5.567 10 C 0.080 3.920 11 C 0.133 3.867 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.138 4.138 15 C 0.166 3.834 16 H 0.125 0.875 17 C 0.110 3.890 18 N -0.586 5.586 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.913 5.913 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.012 4.012 28 O -0.230 6.230 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.254 0.746 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 -19.044 2.148 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.154 6.154 4 C 0.129 3.871 5 N -0.190 5.190 6 C -0.149 4.149 7 C 0.371 3.629 8 O -0.436 6.436 9 N -0.296 5.296 10 C -0.045 4.045 11 C 0.024 3.976 12 H 0.095 0.905 13 C -0.161 4.161 14 C -0.177 4.177 15 C 0.058 3.942 16 H 0.143 0.857 17 C -0.012 4.012 18 N -0.307 5.307 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.559 5.559 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.217 1.217 27 C -0.083 4.083 28 O -0.121 6.121 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.928 -18.269 1.946 20.427 hybrid contribution -0.065 -0.032 -0.486 0.492 sum -8.993 -18.301 1.459 20.444 Atomic orbital electron populations 1.21809 0.91328 1.03500 1.04291 1.23019 0.96795 0.79627 1.02899 1.86392 1.09183 1.30518 1.89262 1.23710 0.83354 0.81917 0.98074 1.71414 1.04188 1.19903 1.23502 1.21966 0.90156 0.94125 1.08610 1.16786 0.85854 0.81851 0.78402 1.90770 1.18191 1.81043 1.53625 1.48099 1.11368 1.04586 1.65499 1.23173 0.81274 1.00261 0.99781 1.22015 0.95232 0.88344 0.91963 0.90491 1.22459 0.96719 0.98528 0.98441 1.22681 0.95631 0.99294 1.00133 1.21888 0.90484 0.93180 0.88621 0.85715 1.22452 0.89285 0.87246 1.02254 1.45164 1.00719 1.07985 1.76865 1.19032 1.02004 0.89134 1.25020 0.90640 1.24945 0.96858 0.99284 0.98742 1.69785 1.06861 1.37640 1.41649 0.86078 0.77963 0.83398 0.78509 1.20477 1.21851 1.21697 1.24872 0.85611 0.92925 1.04929 1.84352 1.16312 1.39275 1.72181 0.90909 0.90945 0.89593 0.90939 0.90909 0.91992 0.87007 0.92868 0.93234 0.92906 0.92881 0.91100 0.90280 0.93533 0.74990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.05 0.36 6.38 37.16 0.24 0.59 16 3 O -0.25 -2.79 10.19 -40.96 -0.42 -3.21 16 4 C 0.37 5.02 8.98 52.22 0.47 5.49 16 5 N -0.44 -7.18 7.90 -11.71 -0.09 -7.27 16 6 C -0.03 -0.49 6.65 -82.98 -0.55 -1.04 16 7 C 0.59 11.45 7.68 -12.55 -0.10 11.35 16 8 O -0.56 -11.77 16.36 5.26 0.09 -11.69 16 9 N -0.57 -11.75 2.26 -173.11 -0.39 -12.14 16 10 C 0.08 1.60 5.42 -3.22 -0.02 1.58 16 11 C 0.13 2.77 4.32 -65.67 -0.28 2.49 16 12 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 13 C -0.12 -2.33 6.18 -25.24 -0.16 -2.48 16 14 C -0.14 -2.82 6.18 -25.25 -0.16 -2.97 16 15 C 0.17 3.90 3.13 -65.91 -0.21 3.69 16 16 H 0.13 3.30 6.25 -51.93 -0.32 2.97 16 17 C 0.11 2.52 5.81 -3.46 -0.02 2.50 16 18 N -0.59 -14.46 2.81 -152.88 -0.43 -14.89 16 19 C -0.22 -6.01 10.36 -15.06 -0.16 -6.16 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 21 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 22 N -0.91 -25.48 10.35 55.49 0.57 -24.90 16 23 Si 0.91 21.61 29.56 -169.99 -5.02 16.58 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 C -0.01 -0.15 11.94 29.90 0.36 0.21 16 28 O -0.23 -2.72 10.20 -17.77 -0.18 -2.90 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.11 2.08 4.46 -52.56 -0.23 1.85 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.89 7.84 -51.93 -0.41 0.49 16 38 H 0.05 1.05 7.83 -51.93 -0.41 0.65 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.60 7.08 -51.93 -0.37 1.23 16 41 H 0.08 2.03 7.90 -51.93 -0.41 1.62 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.23 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.17 348.60 -6.84 -38.02 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.92 Total: 2.39 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -0.29 Total: 14.75 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.34 Total: -59.21 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.51 Total: -17.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.17 -6.84 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029379327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.536 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds