Wall clock time and date at job start Tue Mar 31 2020 13:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47227 * 2 1 4 4 C 1.35346 * 117.00346 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44983 * 180.02562 * 4 3 2 6 6 C 1.36338 * 108.38366 * 179.78124 * 5 4 3 7 7 C 1.47374 * 126.41195 * 180.28858 * 6 5 4 8 8 O 1.21623 * 119.99401 * 186.41182 * 7 6 5 9 9 N 1.34771 * 119.99862 * 6.40872 * 7 6 5 10 10 C 1.47166 * 120.71341 * 6.66848 * 9 7 6 11 11 C 1.53884 * 108.02715 * 132.75333 * 10 9 7 12 12 H 1.09000 * 112.09618 * 181.91704 * 11 10 9 13 13 C 1.54552 * 107.83274 * 306.50789 * 11 10 9 14 14 C 1.54285 * 104.85020 * 89.07855 * 13 11 10 15 15 C 1.54544 * 104.84630 * 359.97438 * 14 13 11 16 16 H 1.09001 * 112.18465 * 146.41451 * 15 14 13 17 17 C 1.47172 * 120.70610 * 186.38674 * 9 7 6 18 18 N 1.48308 * 104.36124 * 24.70890 * 15 14 13 19 19 C 1.36931 * 128.08060 * 139.10840 * 18 15 14 20 20 H 1.08003 * 120.00146 * 200.12869 * 19 18 15 21 21 C 1.38809 * 120.00160 * 20.14209 * 19 18 15 22 22 N 1.31621 * 119.99768 * 355.86931 * 21 19 18 23 23 Si 1.86798 * 120.00561 * 175.87998 * 21 19 18 24 24 H 1.48502 * 109.46666 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47420 * 119.99151 * 23 21 19 26 26 H 1.48495 * 109.47241 * 240.00016 * 23 21 19 27 27 C 1.35913 * 107.17411 * 0.38310 * 6 5 4 28 28 O 1.34205 * 125.44553 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47365 * 300.00298 * 1 2 3 30 30 H 1.09009 * 109.47266 * 59.99744 * 1 2 3 31 31 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46878 * 240.00291 * 2 1 3 33 33 H 1.08996 * 109.47057 * 120.00180 * 2 1 3 34 34 H 1.09000 * 109.74926 * 252.38102 * 10 9 7 35 35 H 1.08993 * 109.74951 * 13.06860 * 10 9 7 36 36 H 1.08991 * 110.36365 * 207.92250 * 13 11 10 37 37 H 1.08997 * 110.36400 * 330.24333 * 13 11 10 38 38 H 1.09004 * 110.36398 * 241.15635 * 14 13 11 39 39 H 1.09002 * 110.36663 * 118.83741 * 14 13 11 40 40 H 1.08996 * 109.74864 * 346.87884 * 17 9 7 41 41 H 1.08994 * 109.74693 * 107.60903 * 17 9 7 42 42 H 0.96998 * 120.00172 * 179.97438 * 22 21 19 43 43 H 1.07998 * 126.45466 * 179.88009 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3481 1.5246 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4523 0.0040 7 6 6.3630 3.4770 0.0118 8 8 7.5283 3.1479 -0.1027 9 7 6.0403 4.7787 0.1458 10 6 4.6546 5.1840 0.4310 11 6 4.6849 6.2095 1.5779 12 1 3.6843 6.5312 1.8668 13 6 5.4718 5.5838 2.7517 14 6 6.9421 5.9748 2.4951 15 6 6.9101 6.8007 1.1893 16 1 7.6627 7.5891 1.1824 17 6 7.0674 5.8248 0.0162 18 7 5.5307 7.3424 1.1303 19 6 5.1311 8.5960 0.7509 20 1 4.1632 8.9686 1.0522 21 6 5.9700 9.3878 -0.0212 22 7 7.1807 8.9671 -0.3204 23 14 5.3807 11.0506 -0.6355 24 1 3.9923 11.2883 -0.1653 25 1 6.2711 12.1164 -0.1097 26 1 5.4100 11.0686 -2.1200 27 6 5.4846 1.1053 -0.0025 28 8 4.2630 0.5427 -0.0016 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.2133 5.6372 -0.4567 35 1 4.0703 4.3137 0.7294 36 1 5.1296 5.9966 3.7006 37 1 5.3615 4.4994 2.7470 38 1 7.5546 5.0827 2.3643 39 1 7.3228 6.5801 3.3179 40 1 8.0589 5.3730 0.0446 41 1 6.9322 6.3590 -0.9242 42 1 7.7668 9.5202 -0.8602 43 1 6.4309 0.5847 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029379327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:15 Heat of formation + Delta-G solvation = -10.398267 kcal Electronic energy + Delta-G solvation = -28272.307209 eV Core-core repulsion = 24320.940191 eV Total energy + Delta-G solvation = -3951.367018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.54781 -41.49182 -39.97923 -39.28963 -36.25930 -35.26467 -34.14608 -32.87197 -32.20781 -31.06748 -30.57807 -28.05387 -26.07990 -25.48416 -24.76545 -24.24228 -23.26948 -21.56327 -21.23043 -20.66333 -19.51284 -18.77394 -18.61539 -17.86631 -17.41329 -17.02723 -16.63244 -16.58496 -16.42373 -15.93534 -15.54100 -15.13734 -14.68074 -14.61231 -14.54908 -14.35412 -13.89679 -13.56607 -13.53734 -13.33980 -13.21821 -12.86269 -12.82234 -12.67271 -12.62676 -12.45853 -11.96500 -11.95003 -11.77573 -11.75634 -11.43940 -11.41079 -11.11735 -10.87408 -10.64929 -9.90260 -9.60122 -8.64364 -7.83391 -5.23245 0.05746 0.85015 0.93396 1.48470 1.50244 1.59416 1.68798 2.05975 2.20832 2.51455 3.23229 3.35904 3.54587 3.75833 3.96190 3.98922 4.01636 4.11349 4.16051 4.25493 4.28826 4.35068 4.39301 4.55619 4.56557 4.71192 4.81202 4.89143 4.89839 4.93283 5.01056 5.04828 5.09660 5.20310 5.25447 5.35718 5.40696 5.56589 5.58954 5.73899 5.84012 6.27939 6.40447 6.58358 7.07234 7.09406 7.73206 8.54804 9.27055 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003725 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.427827 B = 7515.145188 C = 8312.528932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.387 3.613 5 N -0.480 5.480 6 C -0.071 4.071 7 C 0.589 3.411 8 O -0.576 6.576 9 N -0.575 5.575 10 C 0.093 3.907 11 C 0.127 3.873 12 H 0.087 0.913 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.163 3.837 16 H 0.091 0.909 17 C 0.127 3.873 18 N -0.606 5.606 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.297 1.297 27 C 0.033 3.967 28 O -0.213 6.213 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.248 0.752 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -21.703 3.072 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.141 3.859 5 N -0.226 5.226 6 C -0.189 4.189 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.304 5.304 10 C -0.031 4.031 11 C 0.019 3.981 12 H 0.105 0.895 13 C -0.148 4.148 14 C -0.167 4.167 15 C 0.056 3.944 16 H 0.108 0.892 17 C 0.003 3.997 18 N -0.327 5.327 19 C -0.363 4.363 20 H 0.096 0.904 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.221 1.221 26 H -0.224 1.224 27 C -0.039 4.039 28 O -0.104 6.104 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -10.601 -20.967 2.888 23.672 hybrid contribution 0.368 0.620 -0.805 1.080 sum -10.233 -20.347 2.083 22.871 Atomic orbital electron populations 1.21864 0.89898 1.05041 1.03812 1.23447 0.97883 0.77782 1.04198 1.86438 1.07833 1.33334 1.88864 1.23572 0.84157 0.81520 0.96682 1.71113 1.04378 1.21783 1.25363 1.21457 0.89724 0.94561 1.13113 1.17111 0.86471 0.81746 0.76953 1.90745 1.19399 1.81376 1.54294 1.48031 1.10923 1.04860 1.66625 1.23058 0.81073 1.00715 0.98258 1.22246 0.95527 0.87430 0.92869 0.89531 1.22361 0.94976 0.99352 0.98136 1.22550 0.96979 0.98877 0.98310 1.21727 0.89398 0.92776 0.90504 0.89171 1.21980 0.89896 0.87673 1.00176 1.45347 1.01843 1.08396 1.77154 1.19325 1.01946 0.90267 1.24723 0.90398 1.25656 0.97119 1.02538 0.99418 1.69983 1.07640 1.38515 1.42232 0.85111 0.77891 0.79656 0.77225 1.19216 1.22078 1.22418 1.25482 0.86655 0.91622 1.00190 1.84417 1.15867 1.38432 1.71636 0.91300 0.91523 0.86976 0.89749 0.89473 0.94691 0.84818 0.91242 0.91670 0.92437 0.92371 0.91396 0.94217 0.94256 0.71583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 71.98 0.74 -0.33 16 2 C 0.04 0.44 6.38 71.98 0.46 0.90 16 3 O -0.26 -5.22 10.19 -64.15 -0.65 -5.88 16 4 C 0.39 9.38 8.98 130.43 1.17 10.55 16 5 N -0.48 -14.74 7.90 -419.39 -3.31 -18.06 16 6 C -0.07 -2.20 6.65 40.31 0.27 -1.93 16 7 C 0.59 22.71 7.68 86.65 0.67 23.38 16 8 O -0.58 -24.09 16.36 -4.10 -0.07 -24.16 16 9 N -0.58 -24.16 2.26 -819.84 -1.85 -26.02 16 10 C 0.09 3.75 5.42 86.55 0.47 4.22 16 11 C 0.13 5.23 4.32 45.47 0.20 5.43 16 12 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 13 C -0.11 -3.97 6.18 31.56 0.20 -3.78 16 14 C -0.13 -5.16 6.18 31.56 0.20 -4.97 16 15 C 0.16 7.94 3.13 45.31 0.14 8.08 16 16 H 0.09 5.01 6.25 -2.39 -0.01 5.00 16 17 C 0.13 6.04 5.81 86.39 0.50 6.54 16 18 N -0.61 -30.48 2.81 -637.60 -1.79 -32.27 16 19 C -0.23 -12.81 10.36 84.03 0.87 -11.93 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 21 C -0.05 -2.95 5.49 84.86 0.47 -2.48 16 22 N -0.94 -54.52 10.35 21.65 0.22 -54.30 16 23 Si 0.97 45.48 29.56 68.60 2.03 47.51 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.03 0.72 11.94 67.28 0.80 1.52 16 28 O -0.21 -4.25 10.20 18.84 0.19 -4.05 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.13 4.87 4.46 -3.63 -0.02 4.86 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.18 7.84 -2.39 -0.02 2.16 16 38 H 0.06 2.25 7.83 -2.39 -0.02 2.23 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 3.20 7.08 -2.39 -0.02 3.19 16 41 H 0.04 2.17 7.90 -2.39 -0.02 2.15 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.27 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -69.58 348.60 2.93 -66.65 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.02 Total: 15.38 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 7.14 Total: 35.20 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.74 Total: -130.65 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.53 Total: -34.09 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.58 2.93 -66.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029379327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.254 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds