Wall clock time and date at job start Tue Mar 31 2020 13:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.46790 * 2 1 4 4 C 1.35732 * 116.99618 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78147 * 180.23690 * 4 3 2 6 6 C 1.36664 * 103.80575 * 180.12624 * 5 4 3 7 7 C 1.47544 * 126.87753 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99876 * 353.81422 * 7 6 5 9 9 N 1.34770 * 120.00027 * 173.82190 * 7 6 5 10 10 C 1.47167 * 120.70767 * 173.49134 * 9 7 6 11 11 C 1.53886 * 108.03083 * 132.75591 * 10 9 7 12 12 H 1.09000 * 112.57889 * 182.22311 * 11 10 9 13 13 C 1.54548 * 107.82636 * 306.49920 * 11 10 9 14 14 C 1.54282 * 104.84807 * 89.07815 * 13 11 10 15 15 C 1.54546 * 104.84913 * 359.97438 * 14 13 11 16 16 H 1.09002 * 112.18135 * 146.41364 * 15 14 13 17 17 C 1.48433 * 120.83700 * 353.86594 * 9 7 6 18 18 N 1.48304 * 107.21100 * 58.35754 * 11 10 9 19 19 C 1.36933 * 128.07803 * 106.68821 * 18 11 10 20 20 H 1.07998 * 120.00555 * 169.38622 * 19 18 11 21 21 C 1.38818 * 120.00071 * 349.37782 * 19 18 11 22 22 N 1.31617 * 119.99389 * 345.47921 * 21 19 18 23 23 Si 1.86793 * 120.00156 * 165.47446 * 21 19 18 24 24 H 1.48503 * 109.46817 * 94.99090 * 23 21 19 25 25 H 1.48496 * 109.47026 * 214.98744 * 23 21 19 26 26 H 1.48497 * 109.47312 * 334.98753 * 23 21 19 27 27 O 1.34658 * 106.24536 * 359.66834 * 6 5 4 28 28 N 1.20877 * 111.62992 * 0.22633 * 27 6 5 29 29 H 1.08997 * 109.46708 * 59.99930 * 1 2 3 30 30 H 1.08996 * 109.46639 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47052 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47052 * 240.00352 * 2 1 3 33 33 H 1.08996 * 109.47229 * 120.00087 * 2 1 3 34 34 H 1.07993 * 128.09889 * 0.03319 * 5 4 3 35 35 H 1.08996 * 109.75541 * 13.11922 * 10 9 7 36 36 H 1.09005 * 109.74926 * 252.38176 * 10 9 7 37 37 H 1.09001 * 110.36538 * 207.91248 * 13 11 10 38 38 H 1.09000 * 110.36869 * 330.12630 * 13 11 10 39 39 H 1.09007 * 110.36188 * 241.15505 * 14 13 11 40 40 H 1.08994 * 110.36963 * 118.84307 * 14 13 11 41 41 H 1.09004 * 110.57125 * 107.75289 * 17 9 7 42 42 H 1.09001 * 109.56300 * 346.61717 * 17 9 7 43 43 H 0.97005 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.0452 2.7628 0.0053 6 6 5.3625 2.3988 0.0008 7 6 6.5303 3.3006 0.0024 8 8 6.3714 4.5012 -0.1051 9 7 7.7731 2.7935 0.1230 10 6 8.9548 3.6595 -0.0157 11 6 9.9076 3.3563 1.1541 12 1 10.7957 3.9881 1.1451 13 6 9.1045 3.4972 2.4670 14 6 8.5087 2.0965 2.7184 15 6 9.0053 1.2365 1.5342 16 1 9.1842 0.2011 1.8240 17 6 7.9826 1.3485 0.3904 18 7 10.2452 1.9139 1.0825 19 6 11.4256 1.3414 0.6904 20 1 11.5927 0.2861 0.8483 21 6 12.4076 2.1172 0.0897 22 7 12.1127 3.3176 -0.3624 23 14 14.1473 1.4577 -0.0767 24 1 14.3160 0.8388 -1.4160 25 1 15.1162 2.5722 0.0792 26 1 14.3927 0.4378 0.9744 27 8 5.3812 1.0524 0.0015 28 7 4.2639 0.5912 0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.6293 3.7595 0.0098 35 1 8.6510 4.7057 0.0184 36 1 9.4551 3.4512 -0.9616 37 1 9.7645 3.7812 3.2867 38 1 8.3097 4.2336 2.3484 39 1 7.4196 2.1427 2.7227 40 1 8.8756 1.6918 3.6615 41 1 8.3665 0.8464 -0.4976 42 1 7.0398 0.8930 0.6934 43 1 12.7990 3.8600 -0.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029394196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:34 Heat of formation + Delta-G solvation = 45.052018 kcal Electronic energy + Delta-G solvation = -28128.744278 eV Core-core repulsion = 24179.781765 eV Total energy + Delta-G solvation = -3948.962513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.98892 -40.03819 -39.15367 -37.95530 -34.08350 -33.48371 -32.46948 -31.98938 -31.39136 -30.50233 -29.31667 -26.64031 -24.69289 -24.04300 -23.76871 -23.32707 -22.37682 -20.66501 -19.74272 -19.15829 -18.22464 -17.94397 -17.03667 -16.59568 -16.17866 -15.75352 -15.54279 -15.27332 -14.66807 -14.64143 -13.97425 -13.82957 -13.65864 -13.35093 -13.14687 -13.04603 -12.92535 -12.76539 -12.17260 -11.86354 -11.82603 -11.63476 -11.42193 -11.39307 -11.09787 -10.92715 -10.80574 -10.43077 -10.13065 -9.98054 -9.84499 -9.83319 -9.62248 -9.57976 -9.38873 -8.87871 -8.22377 -6.95529 -5.89258 -3.20692 0.82749 2.05417 2.45372 2.69767 3.22218 3.34060 3.41171 3.42466 3.49161 4.01997 4.39171 4.53318 4.58096 4.68229 4.79997 4.92238 5.09293 5.17922 5.27172 5.30719 5.41235 5.56081 5.58688 5.64999 5.67427 5.72053 5.84591 5.90297 6.17899 6.24638 6.32259 6.49431 6.53230 6.61170 6.72241 6.75882 6.81138 6.86125 7.17406 7.42451 7.63327 7.72866 8.00541 8.07348 8.32114 9.00517 9.63715 10.37931 11.24002 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.003182 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.232027 B = 8797.444306 C = 9142.330407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.283 6.283 4 C 0.206 3.794 5 C -0.167 4.167 6 C -0.039 4.039 7 C 0.588 3.412 8 O -0.528 6.528 9 N -0.572 5.572 10 C 0.110 3.890 11 C 0.166 3.834 12 H 0.125 0.875 13 C -0.138 4.138 14 C -0.123 4.123 15 C 0.135 3.865 16 H 0.082 0.918 17 C 0.086 3.914 18 N -0.583 5.583 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.003 4.003 22 N -0.912 5.912 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 O 0.117 5.883 28 N -0.400 5.400 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.187 0.813 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 -4.337 2.346 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.190 6.190 4 C 0.009 3.991 5 C -0.190 4.190 6 C -0.105 4.105 7 C 0.371 3.629 8 O -0.407 6.407 9 N -0.303 5.303 10 C -0.013 4.013 11 C 0.059 3.941 12 H 0.142 0.858 13 C -0.177 4.177 14 C -0.163 4.163 15 C 0.026 3.974 16 H 0.100 0.900 17 C -0.038 4.038 18 N -0.304 5.304 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.558 5.558 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 O 0.054 5.946 28 N -0.126 5.126 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.200 -4.794 2.171 17.987 hybrid contribution 0.554 0.125 -0.263 0.626 sum -16.646 -4.669 1.907 17.393 Atomic orbital electron populations 1.21794 0.92241 1.03156 1.03640 1.22820 0.95801 0.80679 1.02497 1.86203 1.13192 1.30149 1.89434 1.21800 0.85674 0.90573 1.01039 1.22122 0.90138 0.99089 1.07659 1.24376 0.96834 0.84074 1.05223 1.16668 0.81056 0.85910 0.79239 1.90827 1.84376 1.13018 1.52459 1.48563 1.05063 1.10764 1.65877 1.22654 0.83287 0.92715 1.02613 1.21974 0.95483 0.87946 0.88729 0.85806 1.22661 0.99093 0.95984 0.99951 1.22474 0.98507 0.96781 0.98498 1.21934 0.87166 0.96759 0.91497 0.89988 1.23175 1.00085 0.79424 1.01150 1.45251 1.08497 1.00782 1.75889 1.19012 0.89689 0.94063 1.32728 0.90315 1.24762 0.98879 0.97128 0.99286 1.69854 1.32487 1.10956 1.42496 0.86139 0.84374 0.77721 0.77708 1.21669 1.21590 1.20630 1.85168 1.22043 1.18939 1.68400 1.73963 0.90899 1.22704 1.25046 0.91374 0.89995 0.91357 0.91559 0.91529 0.79559 0.90671 0.89619 0.92597 0.92656 0.93119 0.92370 0.90520 0.90223 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.53 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.45 10.21 -18.90 -0.19 -3.64 16 4 C 0.21 2.85 8.00 -16.72 -0.13 2.71 16 5 C -0.17 -2.32 10.97 -38.77 -0.43 -2.75 16 6 C -0.04 -0.60 6.90 -36.36 -0.25 -0.85 16 7 C 0.59 10.49 7.69 -12.47 -0.10 10.39 16 8 O -0.53 -10.56 16.38 5.30 0.09 -10.47 16 9 N -0.57 -10.55 2.26 -171.74 -0.39 -10.94 16 10 C 0.11 2.27 5.89 -3.22 -0.02 2.25 16 11 C 0.17 3.60 3.16 -65.66 -0.21 3.40 16 12 H 0.12 3.05 6.25 -51.93 -0.32 2.73 16 13 C -0.14 -2.57 6.18 -25.25 -0.16 -2.72 16 14 C -0.12 -2.11 6.19 -25.25 -0.16 -2.27 16 15 C 0.14 2.51 4.27 -65.68 -0.28 2.23 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 17 C 0.09 1.49 5.61 -2.54 -0.01 1.47 16 18 N -0.58 -13.24 2.81 -152.61 -0.43 -13.67 16 19 C -0.23 -5.73 10.36 -15.06 -0.16 -5.89 16 20 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 21 C 0.00 -0.09 5.38 -17.43 -0.09 -0.18 16 22 N -0.91 -24.29 10.68 55.49 0.59 -23.70 16 23 Si 0.91 20.74 29.58 -169.99 -5.03 15.72 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 O 0.12 1.76 7.94 15.51 0.12 1.88 16 28 N -0.40 -5.82 11.50 30.47 0.35 -5.47 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.07 1.54 7.08 -51.93 -0.37 1.18 16 36 H 0.09 2.01 8.05 -51.93 -0.42 1.59 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 39 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.22 4.60 -51.95 -0.24 0.98 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -28.02 349.13 -6.93 -34.96 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.94 Total: 2.10 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.37 Total: 7.98 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.13 Total: -53.78 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.02 Total: -12.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.02 -6.93 -34.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029394196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.009 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds