Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.46790 * 2 1 4 4 C 1.35732 * 116.99618 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78147 * 180.23690 * 4 3 2 6 6 C 1.36664 * 103.80575 * 180.12624 * 5 4 3 7 7 C 1.47544 * 126.87753 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99876 * 353.81422 * 7 6 5 9 9 N 1.34770 * 120.00027 * 173.82190 * 7 6 5 10 10 C 1.47167 * 120.70767 * 173.49134 * 9 7 6 11 11 C 1.53886 * 108.03083 * 132.75591 * 10 9 7 12 12 H 1.09000 * 112.57889 * 182.22311 * 11 10 9 13 13 C 1.54548 * 107.82636 * 306.49920 * 11 10 9 14 14 C 1.54282 * 104.84807 * 89.07815 * 13 11 10 15 15 C 1.54546 * 104.84913 * 359.97438 * 14 13 11 16 16 H 1.09002 * 112.18135 * 146.41364 * 15 14 13 17 17 C 1.48433 * 120.83700 * 353.86594 * 9 7 6 18 18 N 1.48304 * 107.21100 * 58.35754 * 11 10 9 19 19 C 1.36933 * 128.07803 * 106.68821 * 18 11 10 20 20 H 1.07998 * 120.00555 * 169.38622 * 19 18 11 21 21 C 1.38818 * 120.00071 * 349.37782 * 19 18 11 22 22 N 1.31617 * 119.99389 * 345.47921 * 21 19 18 23 23 Si 1.86793 * 120.00156 * 165.47446 * 21 19 18 24 24 H 1.48503 * 109.46817 * 94.99090 * 23 21 19 25 25 H 1.48496 * 109.47026 * 214.98744 * 23 21 19 26 26 H 1.48497 * 109.47312 * 334.98753 * 23 21 19 27 27 O 1.34658 * 106.24536 * 359.66834 * 6 5 4 28 28 N 1.20877 * 111.62992 * 0.22633 * 27 6 5 29 29 H 1.08997 * 109.46708 * 59.99930 * 1 2 3 30 30 H 1.08996 * 109.46639 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47052 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47052 * 240.00352 * 2 1 3 33 33 H 1.08996 * 109.47229 * 120.00087 * 2 1 3 34 34 H 1.07993 * 128.09889 * 0.03319 * 5 4 3 35 35 H 1.08996 * 109.75541 * 13.11922 * 10 9 7 36 36 H 1.09005 * 109.74926 * 252.38176 * 10 9 7 37 37 H 1.09001 * 110.36538 * 207.91248 * 13 11 10 38 38 H 1.09000 * 110.36869 * 330.12630 * 13 11 10 39 39 H 1.09007 * 110.36188 * 241.15505 * 14 13 11 40 40 H 1.08994 * 110.36963 * 118.84307 * 14 13 11 41 41 H 1.09004 * 110.57125 * 107.75289 * 17 9 7 42 42 H 1.09001 * 109.56300 * 346.61717 * 17 9 7 43 43 H 0.97005 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.0452 2.7628 0.0053 6 6 5.3625 2.3988 0.0008 7 6 6.5303 3.3006 0.0024 8 8 6.3714 4.5012 -0.1051 9 7 7.7731 2.7935 0.1230 10 6 8.9548 3.6595 -0.0157 11 6 9.9076 3.3563 1.1541 12 1 10.7957 3.9881 1.1451 13 6 9.1045 3.4972 2.4670 14 6 8.5087 2.0965 2.7184 15 6 9.0053 1.2365 1.5342 16 1 9.1842 0.2011 1.8240 17 6 7.9826 1.3485 0.3904 18 7 10.2452 1.9139 1.0825 19 6 11.4256 1.3414 0.6904 20 1 11.5927 0.2861 0.8483 21 6 12.4076 2.1172 0.0897 22 7 12.1127 3.3176 -0.3624 23 14 14.1473 1.4577 -0.0767 24 1 14.3160 0.8388 -1.4160 25 1 15.1162 2.5722 0.0792 26 1 14.3927 0.4378 0.9744 27 8 5.3812 1.0524 0.0015 28 7 4.2639 0.5912 0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.6293 3.7595 0.0098 35 1 8.6510 4.7057 0.0184 36 1 9.4551 3.4512 -0.9616 37 1 9.7645 3.7812 3.2867 38 1 8.3097 4.2336 2.3484 39 1 7.4196 2.1427 2.7227 40 1 8.8756 1.6918 3.6615 41 1 8.3665 0.8464 -0.4976 42 1 7.0398 0.8930 0.6934 43 1 12.7990 3.8600 -0.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029394196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = 28.031151 kcal Electronic energy + Delta-G solvation = -28129.482358 eV Core-core repulsion = 24179.781765 eV Total energy + Delta-G solvation = -3949.700593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.12439 -41.55791 -40.08033 -39.48817 -35.61633 -34.59779 -34.20680 -33.22453 -32.23491 -31.94208 -31.04568 -28.19109 -26.13434 -25.55371 -24.95051 -24.47455 -23.56167 -21.82439 -21.26048 -20.78566 -19.62728 -19.11262 -18.27740 -18.02505 -17.30516 -17.06269 -16.86029 -16.72277 -16.42079 -15.65131 -15.56182 -15.19467 -15.05722 -14.66717 -14.54977 -14.29940 -14.06872 -13.56936 -13.52369 -13.36780 -13.22848 -12.94462 -12.84195 -12.71588 -12.53944 -12.36296 -12.11621 -12.00487 -11.84303 -11.53476 -11.44140 -11.27343 -11.13775 -11.01857 -10.70707 -10.43882 -9.85050 -8.76290 -7.83359 -5.14523 -0.39471 0.95636 1.38953 1.49784 1.51275 1.54182 1.61758 1.84574 2.13889 2.54244 2.93988 3.34421 3.36333 3.56832 3.64531 3.93440 3.94958 4.05125 4.09819 4.13507 4.24031 4.29045 4.32488 4.42960 4.52213 4.63014 4.73540 4.81111 4.84240 4.87703 4.95652 5.04472 5.09958 5.11291 5.17242 5.23055 5.38559 5.54726 5.58904 5.80110 5.87892 6.23332 6.27196 6.74040 6.96682 7.08547 7.75613 8.52596 9.28584 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.003182 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.232027 B = 8797.444306 C = 9142.330407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.210 3.790 5 C -0.150 4.150 6 C -0.052 4.052 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.576 5.576 10 C 0.126 3.874 11 C 0.163 3.837 12 H 0.088 0.912 13 C -0.129 4.129 14 C -0.113 4.113 15 C 0.130 3.870 16 H 0.097 0.903 17 C 0.095 3.905 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.083 0.917 21 C -0.055 4.055 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.293 1.293 25 H -0.299 1.299 26 H -0.272 1.272 27 O 0.113 5.887 28 N -0.401 5.401 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.205 0.795 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.486 -5.785 3.347 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.194 6.194 4 C 0.013 3.987 5 C -0.173 4.173 6 C -0.118 4.118 7 C 0.380 3.620 8 O -0.431 6.431 9 N -0.306 5.306 10 C 0.002 3.998 11 C 0.056 3.944 12 H 0.106 0.894 13 C -0.168 4.168 14 C -0.152 4.152 15 C 0.022 3.978 16 H 0.115 0.885 17 C -0.029 4.029 18 N -0.324 5.324 19 C -0.358 4.358 20 H 0.101 0.899 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.220 1.220 25 H -0.225 1.225 26 H -0.197 1.197 27 O 0.050 5.950 28 N -0.129 5.129 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.222 0.778 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.579 -6.275 3.191 20.806 hybrid contribution 1.124 0.523 -0.591 1.373 sum -18.456 -5.752 2.600 19.505 Atomic orbital electron populations 1.21826 0.89965 1.04673 1.03794 1.23129 0.97583 0.79297 1.02597 1.86237 1.12064 1.32055 1.89061 1.21877 0.86360 0.90242 1.00266 1.22379 0.89480 1.00002 1.05451 1.23844 0.96259 0.84253 1.07434 1.16775 0.81204 0.85897 0.78083 1.90814 1.84850 1.14234 1.53229 1.48481 1.04750 1.10937 1.66439 1.22188 0.83999 0.92933 1.00641 1.21819 0.94768 0.87226 0.90612 0.89378 1.22545 0.98810 0.97379 0.98095 1.22412 0.99456 0.95031 0.98293 1.22185 0.85749 0.97573 0.92268 0.88547 1.23104 1.00949 0.78684 1.00172 1.45412 1.09370 1.01586 1.76023 1.19310 0.90734 0.94287 1.31485 0.89903 1.25415 1.01768 0.97649 1.00113 1.70027 1.32689 1.11923 1.43729 0.85238 0.80766 0.76855 0.77416 1.22045 1.22549 1.19709 1.85119 1.22432 1.18545 1.68898 1.73955 0.90865 1.22800 1.25265 0.91270 0.87782 0.91138 0.91562 0.91325 0.77828 0.90972 0.93093 0.92385 0.92209 0.91301 0.90944 0.91764 0.87595 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.05 0.77 6.38 71.98 0.46 1.23 16 3 O -0.29 -6.28 10.21 -90.56 -0.92 -7.20 16 4 C 0.21 5.26 8.00 85.78 0.69 5.95 16 5 C -0.15 -3.81 10.97 22.80 0.25 -3.56 16 6 C -0.05 -1.52 6.90 24.36 0.17 -1.35 16 7 C 0.59 20.61 7.69 86.70 0.67 21.28 16 8 O -0.55 -21.65 16.38 -3.97 -0.06 -21.72 16 9 N -0.58 -20.99 2.26 -815.54 -1.84 -22.83 16 10 C 0.13 5.37 5.89 86.55 0.51 5.88 16 11 C 0.16 7.22 3.16 45.47 0.14 7.36 16 12 H 0.09 4.55 6.25 -2.39 -0.01 4.54 16 13 C -0.13 -4.70 6.18 31.56 0.20 -4.51 16 14 C -0.11 -3.59 6.19 31.55 0.20 -3.39 16 15 C 0.13 4.61 4.27 45.45 0.19 4.81 16 16 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.09 3.15 5.61 86.29 0.48 3.64 16 18 N -0.60 -27.41 2.81 -636.74 -1.79 -29.19 16 19 C -0.23 -11.65 10.36 84.04 0.87 -10.78 16 20 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 21 C -0.06 -2.91 5.38 84.86 0.46 -2.45 16 22 N -0.94 -51.81 10.68 21.65 0.23 -51.58 16 23 Si 0.97 43.42 29.58 68.60 2.03 45.45 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 O 0.11 3.13 7.94 65.67 0.52 3.65 16 28 N -0.40 -10.72 11.50 -172.02 -1.98 -12.70 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.07 3.07 7.08 -2.39 -0.02 3.05 16 36 H 0.05 2.51 8.05 -2.38 -0.02 2.49 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 39 H 0.07 1.96 7.86 -2.38 -0.02 1.94 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.11 3.00 4.60 -2.74 -0.01 2.98 16 43 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 Total: -1.00 -60.60 349.13 3.23 -57.37 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.03 Total: 15.33 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.02 Total: 23.42 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.38 Total: -116.31 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.47 Total: -25.27 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -60.60 3.23 -57.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029394196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.403 kcal (2) G-P(sol) polarization free energy of solvation -60.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds