Wall clock time and date at job start Tue Mar 31 2020 13:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99954 * 2 1 4 4 C 1.50698 * 109.47209 * 179.97438 * 3 2 1 5 5 N 1.30015 * 127.33612 * 269.95793 * 4 3 2 6 6 O 1.20661 * 112.29795 * 180.02562 * 5 4 3 7 7 C 1.33495 * 113.15791 * 359.71769 * 6 5 4 8 8 C 1.37359 * 106.34170 * 0.45261 * 7 6 5 9 9 C 1.47393 * 128.56507 * 179.85631 * 8 7 6 10 10 O 1.21609 * 120.00318 * 156.62121 * 9 8 7 11 11 N 1.34777 * 120.00203 * 336.62495 * 9 8 7 12 12 C 1.47156 * 120.71199 * 175.33255 * 11 9 8 13 13 C 1.55894 * 107.95035 * 132.45426 * 12 11 9 14 14 H 1.09001 * 112.45499 * 181.85056 * 13 12 11 15 15 C 1.54553 * 108.43942 * 307.13189 * 13 12 11 16 16 C 1.53728 * 104.95382 * 88.29199 * 15 13 12 17 17 C 1.54551 * 104.95724 * 359.97438 * 16 15 13 18 18 H 1.08996 * 112.18441 * 146.28912 * 17 16 15 19 19 C 1.47169 * 120.70587 * 355.35230 * 11 9 8 20 20 N 1.48307 * 104.35188 * 24.58068 * 17 16 15 21 21 C 1.36941 * 128.07558 * 139.07931 * 20 17 16 22 22 H 1.08000 * 119.99549 * 29.27866 * 21 20 17 23 23 C 1.38810 * 120.00090 * 209.27332 * 21 20 17 24 24 N 1.31620 * 119.99905 * 196.44220 * 23 21 20 25 25 Si 1.86798 * 120.00050 * 16.43785 * 23 21 20 26 26 H 1.48499 * 109.47218 * 274.93220 * 25 23 21 27 27 H 1.48501 * 109.46990 * 34.93339 * 25 23 21 28 28 H 1.48503 * 109.47019 * 154.93295 * 25 23 21 29 29 H 1.08995 * 109.47726 * 300.00560 * 1 2 3 30 30 H 1.09003 * 109.46645 * 60.00160 * 1 2 3 31 31 H 1.08997 * 109.46871 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46989 * 59.99970 * 3 2 1 33 33 H 1.08997 * 109.47137 * 299.99851 * 3 2 1 34 34 H 1.07997 * 126.82906 * 180.31007 * 7 6 5 35 35 H 1.09006 * 109.75371 * 252.40948 * 12 11 9 36 36 H 1.08996 * 109.75411 * 13.09377 * 12 11 9 37 37 H 1.08997 * 110.36306 * 207.00389 * 15 13 12 38 38 H 1.08994 * 110.36627 * 329.21100 * 15 13 12 39 39 H 1.09008 * 110.41784 * 241.06868 * 16 15 13 40 40 H 1.08996 * 110.21163 * 118.81868 * 16 15 13 41 41 H 1.09002 * 109.74347 * 107.58928 * 19 11 9 42 42 H 1.08995 * 109.78950 * 346.88010 * 19 11 9 43 43 H 0.97000 * 120.00233 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2982 1.1253 1.0347 6 8 5.4600 1.0335 0.7221 7 6 5.6480 1.0118 -0.5993 8 6 4.4023 1.1158 -1.1687 9 6 4.0448 1.1431 -2.5983 10 8 2.9279 0.8173 -2.9522 11 7 4.9557 1.5292 -3.5135 12 6 4.6500 1.4654 -4.9516 13 6 5.0670 2.8241 -5.5922 14 1 4.8415 2.8686 -6.6577 15 6 4.3994 3.9664 -4.7934 16 6 5.3893 4.2913 -3.6631 17 6 6.5703 3.3171 -3.8748 18 1 7.5249 3.7596 -3.5905 19 6 6.2777 2.0231 -3.0960 20 7 6.5159 2.9817 -5.3185 21 6 7.5596 2.8536 -6.1957 22 1 8.5276 2.5329 -5.8399 23 6 7.3734 3.1358 -7.5420 24 7 8.2497 2.7158 -8.4297 25 14 5.8791 4.1116 -8.0938 26 1 4.7269 3.1924 -8.2748 27 1 5.5443 5.1284 -7.0646 28 1 6.1784 4.7897 -9.3806 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5920 0.9311 -1.1177 35 1 5.2073 0.6489 -5.4109 36 1 3.5810 1.3075 -5.0943 37 1 4.2546 4.8396 -5.4295 38 1 3.4458 3.6351 -4.3825 39 1 4.9264 4.1200 -2.6912 40 1 5.7294 5.3236 -3.7455 41 1 7.0384 1.2763 -3.3233 42 1 6.2731 2.2304 -2.0260 43 1 8.1194 2.9127 -9.3706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029551141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:12 Heat of formation + Delta-G solvation = 47.966203 kcal Electronic energy + Delta-G solvation = -28590.221120 eV Core-core repulsion = 24641.384975 eV Total energy + Delta-G solvation = -3948.836144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.10885 -40.36751 -38.27821 -37.88851 -34.43815 -34.04805 -32.62345 -32.22259 -30.80357 -30.05559 -28.54619 -26.93489 -25.93675 -24.72715 -24.38268 -23.18217 -21.46627 -20.63496 -20.09902 -19.23416 -17.97989 -17.64067 -17.20513 -16.58046 -16.46119 -16.18094 -15.85842 -15.51690 -15.19553 -15.01940 -14.31438 -13.73299 -13.68265 -13.51629 -13.30752 -13.04987 -12.75490 -12.59636 -12.45610 -12.22428 -12.01171 -11.73493 -11.56345 -11.41719 -11.11518 -11.01087 -10.68818 -10.35924 -10.31686 -10.06056 -9.96569 -9.91316 -9.82279 -9.72504 -9.56990 -8.83481 -8.41360 -7.12687 -6.09173 -3.49591 0.98925 1.48574 2.71199 3.11513 3.18092 3.20409 3.36873 3.40007 3.58820 3.98147 4.23553 4.38788 4.56402 4.66564 4.75269 4.96244 5.04504 5.08009 5.15790 5.23092 5.27548 5.29103 5.34944 5.39747 5.43713 5.48778 5.50472 5.58043 5.72593 5.89311 6.00353 6.10882 6.21846 6.28031 6.29695 6.33023 6.54013 6.66523 6.83036 6.87127 7.53891 7.60960 7.98185 8.19047 8.27791 8.63544 9.50761 10.08570 11.06594 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021627 B = 0.003968 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.384127 B = 7054.007430 C = 7688.596517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.147 3.853 4 C 0.060 3.940 5 N -0.341 5.341 6 O 0.104 5.896 7 C -0.018 4.018 8 C -0.225 4.225 9 C 0.586 3.414 10 O -0.536 6.536 11 N -0.583 5.583 12 C 0.106 3.894 13 C 0.115 3.885 14 H 0.092 0.908 15 C -0.130 4.130 16 C -0.125 4.125 17 C 0.136 3.864 18 H 0.091 0.909 19 C 0.077 3.923 20 N -0.595 5.595 21 C -0.243 4.243 22 H 0.091 0.909 23 C 0.030 3.970 24 N -0.906 5.906 25 Si 0.881 3.119 26 H -0.282 1.282 27 H -0.265 1.265 28 H -0.302 1.302 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.236 0.764 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 -0.811 16.036 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.070 3.930 4 C -0.103 4.103 5 N -0.046 5.046 6 O 0.040 5.960 7 C -0.099 4.099 8 C -0.233 4.233 9 C 0.373 3.627 10 O -0.414 6.414 11 N -0.314 5.314 12 C -0.017 4.017 13 C 0.008 3.992 14 H 0.109 0.891 15 C -0.169 4.169 16 C -0.164 4.164 17 C 0.028 3.972 18 H 0.109 0.891 19 C -0.048 4.048 20 N -0.317 5.317 21 C -0.370 4.370 22 H 0.109 0.891 23 C -0.170 4.170 24 N -0.548 5.548 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.190 1.190 28 H -0.230 1.230 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.507 -1.145 16.852 19.382 hybrid contribution -0.903 0.737 -1.381 1.807 sum -10.410 -0.407 15.471 18.652 Atomic orbital electron populations 1.22755 0.80222 1.03073 1.00141 1.87936 1.20145 1.26159 1.95453 1.20460 0.84330 0.86176 1.02053 1.24298 0.97281 1.01857 0.86870 1.73636 0.89617 1.17723 1.23598 1.84588 1.21474 1.66441 1.23536 1.26953 1.00719 0.98886 0.83348 1.22380 0.92593 1.12454 0.95867 1.16854 0.84706 0.78208 0.82932 1.90781 1.20518 1.49542 1.80577 1.47860 1.14641 1.62122 1.06800 1.22748 1.00996 0.99879 0.78124 1.22797 0.86264 0.91750 0.98392 0.89092 1.22462 0.98024 0.98855 0.97581 1.22374 0.96881 0.99666 0.97465 1.21994 0.97357 0.91132 0.86675 0.89096 1.23010 0.84051 0.98972 0.98720 1.45481 1.00937 1.80289 1.05034 1.18582 0.90704 1.40049 0.87641 0.89114 1.25234 0.97225 0.98471 0.96047 1.69759 1.36893 1.46569 1.01577 0.86978 0.82586 0.81534 0.77610 1.21055 1.19011 1.22966 0.94072 0.93471 0.89338 0.91456 0.90028 0.74768 0.90694 0.90005 0.92059 0.92022 0.92652 0.91945 0.90458 0.90327 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.25 10.69 -35.23 -0.38 -5.62 16 3 C 0.15 1.86 6.20 36.00 0.22 2.09 16 4 C 0.06 0.83 7.21 -79.77 -0.58 0.25 16 5 N -0.34 -4.58 12.01 34.78 0.42 -4.16 16 6 O 0.10 1.19 11.06 18.65 0.21 1.40 16 7 C -0.02 -0.19 10.04 30.41 0.31 0.12 16 8 C -0.23 -3.10 6.00 -102.89 -0.62 -3.72 16 9 C 0.59 9.50 7.69 -12.53 -0.10 9.40 16 10 O -0.54 -10.20 15.82 5.27 0.08 -10.12 16 11 N -0.58 -9.26 2.29 -171.57 -0.39 -9.65 16 12 C 0.11 1.92 6.04 -2.14 -0.01 1.91 16 13 C 0.11 2.29 2.94 -64.58 -0.19 2.10 16 14 H 0.09 2.01 3.30 -51.93 -0.17 1.83 16 15 C -0.13 -2.29 6.01 -25.54 -0.15 -2.44 16 16 C -0.12 -1.96 6.18 -25.54 -0.16 -2.11 16 17 C 0.14 2.26 4.27 -65.68 -0.28 1.98 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C 0.08 1.06 4.62 -3.24 -0.01 1.05 16 20 N -0.60 -12.66 2.44 -151.44 -0.37 -13.03 16 21 C -0.24 -6.22 10.74 -15.06 -0.16 -6.39 16 22 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 23 C 0.03 0.82 5.48 -17.43 -0.10 0.73 16 24 N -0.91 -26.42 13.97 55.49 0.78 -25.65 16 25 Si 0.88 21.13 24.78 -169.99 -4.21 16.92 16 26 H -0.28 -6.55 6.30 56.52 0.36 -6.19 16 27 H -0.27 -6.16 5.99 56.52 0.34 -5.82 16 28 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 34 H 0.24 1.66 6.09 -52.49 -0.32 1.34 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.46 7.08 -51.93 -0.37 1.10 16 37 H 0.06 1.11 7.01 -51.93 -0.36 0.75 16 38 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 39 H 0.05 0.78 7.86 -51.92 -0.41 0.37 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.83 4.24 -51.93 -0.22 0.61 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -32.25 339.61 -5.18 -37.42 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.71 Total: 0.97 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.71 Total: 6.40 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.43 Total: -52.49 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.09 Total: -14.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.21 Total: 16.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.25 -5.18 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029551141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.389 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds