Wall clock time and date at job start Tue Mar 31 2020 13:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99954 * 2 1 4 4 C 1.50698 * 109.47209 * 179.97438 * 3 2 1 5 5 N 1.30015 * 127.33612 * 269.95793 * 4 3 2 6 6 O 1.20661 * 112.29795 * 180.02562 * 5 4 3 7 7 C 1.33495 * 113.15791 * 359.71769 * 6 5 4 8 8 C 1.37359 * 106.34170 * 0.45261 * 7 6 5 9 9 C 1.47393 * 128.56507 * 179.85631 * 8 7 6 10 10 O 1.21609 * 120.00318 * 156.62121 * 9 8 7 11 11 N 1.34777 * 120.00203 * 336.62495 * 9 8 7 12 12 C 1.47156 * 120.71199 * 175.33255 * 11 9 8 13 13 C 1.55894 * 107.95035 * 132.45426 * 12 11 9 14 14 H 1.09001 * 112.45499 * 181.85056 * 13 12 11 15 15 C 1.54553 * 108.43942 * 307.13189 * 13 12 11 16 16 C 1.53728 * 104.95382 * 88.29199 * 15 13 12 17 17 C 1.54551 * 104.95724 * 359.97438 * 16 15 13 18 18 H 1.08996 * 112.18441 * 146.28912 * 17 16 15 19 19 C 1.47169 * 120.70587 * 355.35230 * 11 9 8 20 20 N 1.48307 * 104.35188 * 24.58068 * 17 16 15 21 21 C 1.36941 * 128.07558 * 139.07931 * 20 17 16 22 22 H 1.08000 * 119.99549 * 29.27866 * 21 20 17 23 23 C 1.38810 * 120.00090 * 209.27332 * 21 20 17 24 24 N 1.31620 * 119.99905 * 196.44220 * 23 21 20 25 25 Si 1.86798 * 120.00050 * 16.43785 * 23 21 20 26 26 H 1.48499 * 109.47218 * 274.93220 * 25 23 21 27 27 H 1.48501 * 109.46990 * 34.93339 * 25 23 21 28 28 H 1.48503 * 109.47019 * 154.93295 * 25 23 21 29 29 H 1.08995 * 109.47726 * 300.00560 * 1 2 3 30 30 H 1.09003 * 109.46645 * 60.00160 * 1 2 3 31 31 H 1.08997 * 109.46871 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46989 * 59.99970 * 3 2 1 33 33 H 1.08997 * 109.47137 * 299.99851 * 3 2 1 34 34 H 1.07997 * 126.82906 * 180.31007 * 7 6 5 35 35 H 1.09006 * 109.75371 * 252.40948 * 12 11 9 36 36 H 1.08996 * 109.75411 * 13.09377 * 12 11 9 37 37 H 1.08997 * 110.36306 * 207.00389 * 15 13 12 38 38 H 1.08994 * 110.36627 * 329.21100 * 15 13 12 39 39 H 1.09008 * 110.41784 * 241.06868 * 16 15 13 40 40 H 1.08996 * 110.21163 * 118.81868 * 16 15 13 41 41 H 1.09002 * 109.74347 * 107.58928 * 19 11 9 42 42 H 1.08995 * 109.78950 * 346.88010 * 19 11 9 43 43 H 0.97000 * 120.00233 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2982 1.1253 1.0347 6 8 5.4600 1.0335 0.7221 7 6 5.6480 1.0118 -0.5993 8 6 4.4023 1.1158 -1.1687 9 6 4.0448 1.1431 -2.5983 10 8 2.9279 0.8173 -2.9522 11 7 4.9557 1.5292 -3.5135 12 6 4.6500 1.4654 -4.9516 13 6 5.0670 2.8241 -5.5922 14 1 4.8415 2.8686 -6.6577 15 6 4.3994 3.9664 -4.7934 16 6 5.3893 4.2913 -3.6631 17 6 6.5703 3.3171 -3.8748 18 1 7.5249 3.7596 -3.5905 19 6 6.2777 2.0231 -3.0960 20 7 6.5159 2.9817 -5.3185 21 6 7.5596 2.8536 -6.1957 22 1 8.5276 2.5329 -5.8399 23 6 7.3734 3.1358 -7.5420 24 7 8.2497 2.7158 -8.4297 25 14 5.8791 4.1116 -8.0938 26 1 4.7269 3.1924 -8.2748 27 1 5.5443 5.1284 -7.0646 28 1 6.1784 4.7897 -9.3806 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5920 0.9311 -1.1177 35 1 5.2073 0.6489 -5.4109 36 1 3.5810 1.3075 -5.0943 37 1 4.2546 4.8396 -5.4295 38 1 3.4458 3.6351 -4.3825 39 1 4.9264 4.1200 -2.6912 40 1 5.7294 5.3236 -3.7455 41 1 7.0384 1.2763 -3.3233 42 1 6.2731 2.2304 -2.0260 43 1 8.1194 2.9127 -9.3706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029551141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:11 Heat of formation + Delta-G solvation = 25.707680 kcal Electronic energy + Delta-G solvation = -28591.186322 eV Core-core repulsion = 24641.384975 eV Total energy + Delta-G solvation = -3949.801346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.08729 -41.71566 -39.54580 -38.90650 -35.80249 -35.09619 -34.40350 -33.37876 -32.10662 -31.76321 -29.44674 -28.28285 -26.80368 -26.02915 -25.84630 -24.61202 -22.44380 -22.00665 -21.46839 -20.61814 -19.08199 -18.88879 -18.30838 -18.15220 -17.49144 -17.35163 -16.96242 -16.76013 -16.67330 -16.08629 -15.47275 -15.33304 -15.14339 -14.90484 -14.68981 -14.46165 -14.10154 -13.76772 -13.56491 -13.49313 -13.30757 -13.05484 -12.79335 -12.64800 -12.54593 -12.43347 -12.26868 -11.84310 -11.60468 -11.48969 -11.34110 -11.29015 -11.20659 -10.82444 -10.77365 -10.59122 -9.89678 -8.87028 -8.16662 -5.50786 0.03353 0.49598 1.26918 1.39553 1.47424 1.64833 1.96274 2.15703 2.40796 2.65188 3.02322 3.03930 3.20469 3.31918 3.54293 3.77981 3.85206 3.90592 4.02299 4.08491 4.08658 4.21202 4.25100 4.34981 4.45866 4.49236 4.52727 4.58367 4.61413 4.64594 4.73695 4.80099 4.84816 4.85702 4.98460 5.00033 5.18660 5.32789 5.47495 5.75935 6.03570 6.15770 6.37197 6.71421 7.00676 7.08485 7.50747 8.20533 9.03264 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021627 B = 0.003968 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.384127 B = 7054.007430 C = 7688.596517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.145 3.855 4 C 0.047 3.953 5 N -0.352 5.352 6 O 0.115 5.885 7 C 0.018 3.982 8 C -0.255 4.255 9 C 0.592 3.408 10 O -0.570 6.570 11 N -0.582 5.582 12 C 0.116 3.884 13 C 0.107 3.893 14 H 0.067 0.933 15 C -0.126 4.126 16 C -0.117 4.117 17 C 0.131 3.869 18 H 0.104 0.896 19 C 0.082 3.918 20 N -0.613 5.613 21 C -0.216 4.216 22 H 0.068 0.932 23 C -0.028 4.028 24 N -0.957 5.957 25 Si 0.934 3.066 26 H -0.277 1.277 27 H -0.252 1.252 28 H -0.316 1.316 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.273 0.727 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -0.274 19.028 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.068 3.932 4 C -0.115 4.115 5 N -0.057 5.057 6 O 0.051 5.949 7 C -0.063 4.063 8 C -0.263 4.263 9 C 0.381 3.619 10 O -0.450 6.450 11 N -0.313 5.313 12 C -0.009 4.009 13 C 0.001 3.999 14 H 0.084 0.916 15 C -0.165 4.165 16 C -0.156 4.156 17 C 0.024 3.976 18 H 0.122 0.878 19 C -0.041 4.041 20 N -0.336 5.336 21 C -0.345 4.345 22 H 0.085 0.915 23 C -0.224 4.224 24 N -0.603 5.603 25 Si 0.765 3.235 26 H -0.205 1.205 27 H -0.176 1.176 28 H -0.245 1.245 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.288 0.712 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.090 -0.594 19.922 22.340 hybrid contribution -0.717 0.490 -2.177 2.344 sum -10.807 -0.104 17.745 20.778 Atomic orbital electron populations 1.22953 0.78429 1.04149 1.01159 1.87882 1.22255 1.26995 1.95656 1.20540 0.84041 0.85974 1.02679 1.24549 0.97978 1.01965 0.87019 1.73648 0.90112 1.18229 1.23671 1.84593 1.20762 1.65688 1.23883 1.27496 1.00784 0.95345 0.82690 1.22141 0.94095 1.15603 0.94448 1.17059 0.83981 0.77138 0.83756 1.90766 1.22029 1.50939 1.81304 1.47829 1.15449 1.62308 1.05722 1.22424 1.00611 0.98209 0.79633 1.22838 0.85719 0.93696 0.97679 0.91563 1.22414 0.98754 0.97481 0.97870 1.22348 0.95791 0.99639 0.97814 1.22292 0.98652 0.92870 0.83759 0.87834 1.23089 0.83036 0.97516 1.00492 1.45528 1.00581 1.80889 1.06627 1.18506 0.90870 1.37012 0.88077 0.91465 1.25779 0.99733 1.00319 0.96543 1.69887 1.39433 1.49324 1.01635 0.86105 0.80146 0.80534 0.76687 1.20472 1.17623 1.24542 0.91955 0.93502 0.88332 0.89433 0.90710 0.71162 0.92234 0.90111 0.92732 0.91082 0.90142 0.91368 0.89921 0.86265 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.83 10.69 -148.98 -1.59 -12.42 16 3 C 0.14 3.42 6.20 71.24 0.44 3.87 16 4 C 0.05 1.19 7.21 45.16 0.33 1.52 16 5 N -0.35 -8.39 12.01 -44.78 -0.54 -8.92 16 6 O 0.11 2.17 11.06 76.97 0.85 3.02 16 7 C 0.02 0.29 10.04 67.61 0.68 0.97 16 8 C -0.26 -6.20 6.00 -18.75 -0.11 -6.31 16 9 C 0.59 17.77 7.69 86.65 0.67 18.44 16 10 O -0.57 -21.06 15.82 -4.06 -0.06 -21.12 16 11 N -0.58 -16.98 2.29 -814.97 -1.86 -18.85 16 12 C 0.12 4.07 6.04 87.26 0.53 4.60 16 13 C 0.11 4.15 2.94 46.18 0.14 4.28 16 14 H 0.07 2.90 3.30 -2.39 -0.01 2.89 16 15 C -0.13 -4.13 6.01 31.37 0.19 -3.94 16 16 C -0.12 -3.23 6.18 31.37 0.19 -3.04 16 17 C 0.13 3.90 4.27 45.45 0.19 4.10 16 18 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 19 C 0.08 1.93 4.62 86.53 0.40 2.33 16 20 N -0.61 -25.25 2.44 -633.05 -1.54 -26.79 16 21 C -0.22 -11.11 10.74 84.03 0.90 -10.21 16 22 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 23 C -0.03 -1.58 5.48 84.86 0.47 -1.11 16 24 N -0.96 -57.68 13.97 21.65 0.30 -57.38 16 25 Si 0.93 44.49 24.78 68.60 1.70 46.19 16 26 H -0.28 -12.72 6.30 99.48 0.63 -12.10 16 27 H -0.25 -11.25 5.99 99.48 0.60 -10.66 16 28 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 1.82 7.75 -2.39 -0.02 1.81 16 34 H 0.27 2.18 6.09 -2.91 -0.02 2.16 16 35 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.08 2.85 7.08 -2.39 -0.02 2.84 16 37 H 0.05 1.85 7.01 -2.39 -0.02 1.83 16 38 H 0.07 2.19 7.88 -2.39 -0.02 2.17 16 39 H 0.08 1.86 7.86 -2.38 -0.02 1.84 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.12 1.85 4.24 -2.39 -0.01 1.84 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -72.10 339.61 4.36 -67.74 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.85 Total: 11.27 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.26 Total: 17.26 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -3.64 Total: -111.94 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.80 Total: -30.52 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.70 Total: 46.19 kcal Total: -72.10 4.36 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029551141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.446 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds