Wall clock time and date at job start Tue Mar 31 2020 13:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35503 * 116.99848 * 2 1 4 4 C 1.39211 * 120.90094 * 359.97438 * 3 2 1 5 5 C 1.37908 * 119.38933 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.28927 * 0.02562 * 5 4 3 7 7 C 1.32188 * 121.97781 * 359.67982 * 6 5 4 8 8 O 1.35430 * 119.77241 * 180.28741 * 7 6 5 9 9 C 1.42901 * 117.00234 * 0.29537 * 8 7 6 10 10 C 1.40284 * 120.44484 * 0.58362 * 7 6 5 11 11 C 1.47230 * 120.65188 * 179.72870 * 10 7 6 12 12 O 1.21623 * 119.99903 * 269.72165 * 11 10 7 13 13 N 1.34772 * 120.00028 * 89.72223 * 11 10 7 14 14 C 1.46498 * 120.00244 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47433 * 179.97438 * 14 13 11 16 16 C 1.53495 * 114.20718 * 174.99996 * 15 14 13 17 17 N 1.47066 * 87.98658 * 87.71698 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 H 1.09000 * 109.47175 * 60.00061 * 1 2 3 28 28 H 1.09004 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47290 * 299.99763 * 1 2 3 30 30 H 1.07996 * 120.30556 * 0.04931 * 4 3 2 31 31 H 1.07995 * 119.35087 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.46754 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47048 * 299.99829 * 9 8 7 34 34 H 1.08998 * 109.47034 * 59.99583 * 9 8 7 35 35 H 0.97001 * 119.99846 * 0.02562 * 13 11 10 36 36 H 1.09005 * 109.47111 * 59.99821 * 14 13 11 37 37 H 1.09000 * 109.47302 * 299.99963 * 14 13 11 38 38 H 1.08999 * 113.27959 * 41.93420 * 15 14 13 39 39 H 1.09005 * 113.46950 * 332.94264 * 16 15 14 40 40 H 1.08994 * 113.52293 * 202.50748 * 16 15 14 41 41 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 43 43 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 0.0047 8 8 5.3846 2.6942 0.0097 9 6 5.9203 4.0190 0.0146 10 6 3.4471 1.3030 -0.0002 11 6 4.2821 0.0904 0.0007 12 8 4.6270 -0.4112 -1.0522 13 7 4.6644 -0.4637 1.1683 14 6 5.4948 -1.6706 1.1692 15 6 5.7847 -2.0891 2.6121 16 6 6.5485 -3.4142 2.7416 17 7 7.7974 -2.6450 2.6347 18 6 9.0741 -2.8922 2.2058 19 1 9.3377 -3.8698 1.8302 20 6 10.0292 -1.8860 2.2527 21 7 9.7077 -0.6944 2.7100 22 14 11.7706 -2.2231 1.6668 23 1 11.8732 -3.6300 1.2029 24 1 12.1017 -1.3073 0.5457 25 1 12.7212 -1.9998 2.7856 26 6 7.0734 -1.4952 3.1974 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2249 2.3528 -0.0002 31 1 1.3881 4.5129 -0.0010 32 1 7.0092 3.9705 0.0188 33 1 5.5834 4.5504 -0.8755 34 1 5.5769 4.5465 0.9044 35 1 4.3890 -0.0638 2.0080 36 1 6.4338 -1.4659 0.6550 37 1 4.9674 -2.4749 0.6563 38 1 4.9172 -2.0074 3.2669 39 1 6.3843 -4.0936 1.9051 40 1 6.4185 -3.8985 3.7094 41 1 10.3752 0.0087 2.7431 42 1 7.0826 -1.4674 4.2871 43 1 7.3553 -0.5428 2.7486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031843420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:38 Heat of formation + Delta-G solvation = -4.091497 kcal Electronic energy + Delta-G solvation = -27321.301930 eV Core-core repulsion = 23370.208394 eV Total energy + Delta-G solvation = -3951.093536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23593 -39.35785 -39.06252 -37.95922 -37.44601 -34.04992 -32.29471 -31.93123 -30.97490 -28.51875 -28.19860 -27.01412 -26.10482 -24.55402 -24.23686 -22.69203 -22.29894 -20.53649 -19.21920 -18.80204 -17.85424 -17.23304 -16.70786 -16.65779 -16.44495 -15.84684 -15.60867 -15.38700 -15.01869 -14.80486 -14.43019 -14.14713 -13.76147 -13.68322 -13.44364 -13.43938 -12.87386 -12.51100 -12.25373 -11.99420 -11.97150 -11.71662 -11.48774 -11.25799 -11.03333 -10.92920 -10.67841 -10.45089 -10.29024 -9.85293 -9.72924 -9.51744 -9.18568 -9.16500 -8.78062 -8.74557 -8.52857 -6.80953 -5.69830 -3.01783 0.74113 1.05478 2.44535 2.90135 3.26249 3.37284 3.44526 3.49744 3.52228 3.58931 4.12884 4.36114 4.52556 4.67164 4.75403 4.77333 4.81720 5.11268 5.22683 5.25376 5.30248 5.35169 5.40290 5.43959 5.46326 5.59916 5.64541 5.70504 5.83715 6.10488 6.25968 6.43216 6.60018 6.67132 6.78924 6.80825 6.92542 7.07097 7.25470 7.36953 7.59307 7.63608 7.89769 8.04997 8.58093 9.10815 9.77610 10.71107 11.47707 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.003550 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.544440 B = 7886.310415 C = 9131.168276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.232 3.768 4 C -0.303 4.303 5 C 0.188 3.812 6 N -0.561 5.561 7 C 0.390 3.610 8 O -0.288 6.288 9 C 0.041 3.959 10 C -0.233 4.233 11 C 0.585 3.415 12 O -0.532 6.532 13 N -0.708 5.708 14 C 0.152 3.848 15 C -0.161 4.161 16 C 0.127 3.873 17 N -0.609 5.609 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.158 3.842 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.034 9.371 -2.630 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.178 3.822 4 C -0.325 4.325 5 C 0.033 3.967 6 N -0.289 5.289 7 C 0.210 3.790 8 O -0.192 6.192 9 C -0.054 4.054 10 C -0.240 4.240 11 C 0.368 3.632 12 O -0.409 6.409 13 N -0.358 5.358 14 C 0.030 3.970 15 C -0.180 4.180 16 C 0.000 4.000 17 N -0.335 5.335 18 C -0.344 4.344 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.032 3.968 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.677 9.405 -3.479 22.980 hybrid contribution 0.148 -0.295 0.346 0.478 sum -20.529 9.111 -3.133 22.678 Atomic orbital electron populations 1.23227 0.77081 1.04801 1.01829 1.86101 1.22321 1.25679 1.86594 1.18838 0.89837 0.85132 0.88438 1.21943 1.01641 0.92475 1.16447 1.22265 0.88533 0.97254 0.88679 1.67458 1.07904 1.30412 1.23110 1.19425 0.84802 0.87414 0.87325 1.86346 1.14886 1.32051 1.85955 1.22984 0.99216 0.80816 1.02383 1.19011 0.91328 0.93805 1.19826 1.17318 0.79238 0.82361 0.84258 1.90794 1.55842 1.62821 1.31399 1.45928 1.52658 1.29444 1.07754 1.21030 0.94875 0.84941 0.96191 1.23256 0.98296 1.01024 0.95464 1.22346 0.86563 0.92983 0.98080 1.45623 1.06291 1.09354 1.72226 1.18976 0.83913 0.97028 1.34437 0.90121 1.24771 0.98144 0.95895 1.01600 1.69837 1.33118 1.02208 1.51395 0.86061 0.84465 0.77463 0.77893 1.20452 1.21680 1.21849 1.22146 0.84975 0.94642 0.94999 0.92034 0.87525 0.91954 0.83637 0.81738 0.87927 0.92090 0.91901 0.76956 0.89773 0.92194 0.91158 0.94014 0.94709 0.93818 0.95830 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.15 16 2 O -0.30 -3.51 10.03 -18.20 -0.18 -3.69 16 3 C 0.23 2.89 6.74 -38.32 -0.26 2.63 16 4 C -0.30 -2.70 9.09 -39.34 -0.36 -3.06 16 5 C 0.19 1.72 11.15 -17.57 -0.20 1.53 16 6 N -0.56 -7.02 9.20 -13.06 -0.12 -7.14 16 7 C 0.39 5.91 7.51 -16.63 -0.12 5.78 16 8 O -0.29 -4.70 9.93 -17.98 -0.18 -4.88 16 9 C 0.04 0.49 10.38 101.05 1.05 1.54 16 10 C -0.23 -3.65 5.66 -104.58 -0.59 -4.24 16 11 C 0.58 11.05 6.42 -12.61 -0.08 10.97 16 12 O -0.53 -12.18 17.11 5.26 0.09 -12.09 16 13 N -0.71 -12.36 5.55 -61.44 -0.34 -12.70 16 14 C 0.15 2.97 5.50 -4.04 -0.02 2.95 16 15 C -0.16 -3.02 4.17 -90.10 -0.38 -3.40 16 16 C 0.13 2.64 8.26 -8.51 -0.07 2.57 16 17 N -0.61 -15.94 3.62 -184.76 -0.67 -16.61 16 18 C -0.22 -6.23 10.75 -15.06 -0.16 -6.39 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.82 11.51 55.49 0.64 -27.18 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.16 3.75 6.90 -8.51 -0.06 3.69 16 27 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 28 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 30 H 0.15 0.78 6.45 -52.49 -0.34 0.44 16 31 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.40 5.93 8.46 -40.82 -0.35 5.58 16 36 H 0.08 2.02 7.92 -51.93 -0.41 1.61 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.98 7.10 -51.93 -0.37 1.61 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -37.29 368.41 -6.62 -43.91 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.03 Total: 1.63 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: -0.35 Total: 15.40 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.49 Total: -63.63 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.27 Total: -20.67 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.29 -6.62 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031843420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.815 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds