Wall clock time and date at job start Tue Mar 31 2020 13:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35503 * 116.99848 * 2 1 4 4 C 1.39211 * 120.90094 * 359.97438 * 3 2 1 5 5 C 1.37908 * 119.38933 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.28927 * 0.02562 * 5 4 3 7 7 C 1.32188 * 121.97781 * 359.67982 * 6 5 4 8 8 O 1.35430 * 119.77241 * 180.28741 * 7 6 5 9 9 C 1.42901 * 117.00234 * 0.29537 * 8 7 6 10 10 C 1.40284 * 120.44484 * 0.58362 * 7 6 5 11 11 C 1.47230 * 120.65188 * 179.72870 * 10 7 6 12 12 O 1.21623 * 119.99903 * 269.72165 * 11 10 7 13 13 N 1.34772 * 120.00028 * 89.72223 * 11 10 7 14 14 C 1.46498 * 120.00244 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47433 * 179.97438 * 14 13 11 16 16 C 1.53495 * 114.20718 * 174.99996 * 15 14 13 17 17 N 1.47066 * 87.98658 * 87.71698 * 16 15 14 18 18 C 1.36937 * 136.06113 * 206.85859 * 17 16 15 19 19 H 1.07995 * 120.00001 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99557 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47441 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47001 * 120.00359 * 22 20 18 25 25 H 1.48499 * 109.47209 * 240.00202 * 22 20 18 26 26 C 1.47067 * 87.88528 * 27.11900 * 17 16 15 27 27 H 1.09000 * 109.47175 * 60.00061 * 1 2 3 28 28 H 1.09004 * 109.47403 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47290 * 299.99763 * 1 2 3 30 30 H 1.07996 * 120.30556 * 0.04931 * 4 3 2 31 31 H 1.07995 * 119.35087 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.46754 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47048 * 299.99829 * 9 8 7 34 34 H 1.08998 * 109.47034 * 59.99583 * 9 8 7 35 35 H 0.97001 * 119.99846 * 0.02562 * 13 11 10 36 36 H 1.09005 * 109.47111 * 59.99821 * 14 13 11 37 37 H 1.09000 * 109.47302 * 299.99963 * 14 13 11 38 38 H 1.08999 * 113.27959 * 41.93420 * 15 14 13 39 39 H 1.09005 * 113.46950 * 332.94264 * 16 15 14 40 40 H 1.08994 * 113.52293 * 202.50748 * 16 15 14 41 41 H 0.96999 * 119.99537 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.46858 * 87.65629 * 26 17 16 43 43 H 1.08993 * 113.47208 * 218.09965 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5985 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 0.0047 8 8 5.3846 2.6942 0.0097 9 6 5.9203 4.0190 0.0146 10 6 3.4471 1.3030 -0.0002 11 6 4.2821 0.0904 0.0007 12 8 4.6270 -0.4112 -1.0522 13 7 4.6644 -0.4637 1.1683 14 6 5.4948 -1.6706 1.1692 15 6 5.7847 -2.0891 2.6121 16 6 6.5485 -3.4142 2.7416 17 7 7.7974 -2.6450 2.6347 18 6 9.0741 -2.8922 2.2058 19 1 9.3377 -3.8698 1.8302 20 6 10.0292 -1.8860 2.2527 21 7 9.7077 -0.6944 2.7100 22 14 11.7706 -2.2231 1.6668 23 1 11.8732 -3.6300 1.2029 24 1 12.1017 -1.3073 0.5457 25 1 12.7212 -1.9998 2.7856 26 6 7.0734 -1.4952 3.1974 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2249 2.3528 -0.0002 31 1 1.3881 4.5129 -0.0010 32 1 7.0092 3.9705 0.0188 33 1 5.5834 4.5504 -0.8755 34 1 5.5769 4.5465 0.9044 35 1 4.3890 -0.0638 2.0080 36 1 6.4338 -1.4659 0.6550 37 1 4.9674 -2.4749 0.6563 38 1 4.9172 -2.0074 3.2669 39 1 6.3843 -4.0936 1.9051 40 1 6.4185 -3.8985 3.7094 41 1 10.3752 0.0087 2.7431 42 1 7.0826 -1.4674 4.2871 43 1 7.3553 -0.5428 2.7486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031843420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:38 Heat of formation + Delta-G solvation = -34.763794 kcal Electronic energy + Delta-G solvation = -27322.631980 eV Core-core repulsion = 23370.208394 eV Total energy + Delta-G solvation = -3952.423586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19647 -40.61310 -40.24786 -39.64470 -38.36098 -35.68847 -34.22357 -33.10549 -31.83321 -30.35958 -28.88959 -28.07160 -27.61197 -26.34469 -25.45072 -24.14443 -23.56112 -21.91786 -20.65164 -19.94394 -18.86068 -18.72361 -18.42112 -17.64390 -17.54730 -17.03736 -16.91656 -16.64506 -16.34920 -16.15136 -15.74648 -15.61078 -15.34799 -14.78729 -14.74472 -14.46050 -14.27710 -14.00081 -13.75151 -13.40570 -12.98150 -12.84828 -12.82323 -12.59797 -12.55869 -12.44221 -12.26587 -12.17367 -11.83894 -11.62532 -11.45137 -11.05376 -10.90412 -10.68637 -10.10978 -10.07342 -9.70978 -8.89977 -7.90123 -5.22270 -0.15390 0.17986 1.42609 1.44986 1.47827 1.54399 1.62890 2.13556 2.44112 2.47036 2.58525 3.28462 3.32001 3.49644 3.58109 3.67147 3.80500 3.93967 3.96418 4.18177 4.34022 4.35906 4.39682 4.42074 4.50808 4.57181 4.60585 4.70312 4.76880 4.78816 4.86495 4.89773 4.97839 5.07188 5.13980 5.24479 5.37114 5.53644 5.61830 5.95758 6.07611 6.12883 6.47931 6.72672 6.92052 7.15780 7.61253 8.62130 9.27565 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.003550 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.544440 B = 7886.310415 C = 9131.168276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.231 3.769 4 C -0.283 4.283 5 C 0.193 3.807 6 N -0.568 5.568 7 C 0.373 3.627 8 O -0.327 6.327 9 C 0.039 3.961 10 C -0.270 4.270 11 C 0.585 3.415 12 O -0.586 6.586 13 N -0.698 5.698 14 C 0.164 3.836 15 C -0.125 4.125 16 C 0.127 3.873 17 N -0.643 5.643 18 C -0.227 4.227 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.289 1.289 26 C 0.155 3.845 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.191 0.809 31 H 0.214 0.786 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.246 0.754 42 H 0.025 0.975 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.383 9.811 -2.055 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.176 3.824 4 C -0.304 4.304 5 C 0.039 3.961 6 N -0.296 5.296 7 C 0.194 3.806 8 O -0.233 6.233 9 C -0.055 4.055 10 C -0.277 4.277 11 C 0.371 3.629 12 O -0.466 6.466 13 N -0.348 5.348 14 C 0.040 3.960 15 C -0.144 4.144 16 C 0.002 3.998 17 N -0.370 5.370 18 C -0.355 4.355 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.216 1.216 26 C 0.029 3.971 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.230 0.770 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.085 9.830 -2.866 26.171 hybrid contribution 1.004 -0.429 0.163 1.103 sum -23.082 9.401 -2.703 25.069 Atomic orbital electron populations 1.23627 0.74216 1.06394 1.03803 1.86073 1.25313 1.25841 1.86300 1.18996 0.88794 0.86675 0.87953 1.22386 1.03536 0.90693 1.13782 1.23166 0.87504 0.99332 0.86126 1.67546 1.09474 1.29076 1.23551 1.19515 0.84567 0.87997 0.88498 1.86279 1.16383 1.34165 1.86489 1.23122 0.99333 0.79698 1.03351 1.18936 0.92694 0.92292 1.23751 1.17906 0.78648 0.82899 0.83474 1.90742 1.57999 1.64705 1.33141 1.45820 1.51779 1.28809 1.08400 1.20725 0.92943 0.86034 0.96309 1.22998 0.97870 0.98495 0.95084 1.22562 0.84038 0.93677 0.99533 1.45968 1.06829 1.11632 1.72530 1.19356 0.85390 0.97053 1.33723 0.89889 1.25608 1.02070 0.95863 1.02598 1.70023 1.33929 1.02941 1.53083 0.85047 0.79772 0.77758 0.77036 1.18876 1.22292 1.21578 1.22121 0.87393 0.92757 0.94804 0.90321 0.86398 0.89532 0.79192 0.76992 0.87744 0.91110 0.90820 0.75362 0.95141 0.91298 0.86284 0.93153 0.92116 0.94473 0.95691 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.32 -7.08 10.03 -88.05 -0.88 -7.97 16 3 C 0.23 5.35 6.74 23.09 0.16 5.51 16 4 C -0.28 -3.90 9.09 22.43 0.20 -3.70 16 5 C 0.19 2.80 11.15 84.58 0.94 3.74 16 6 N -0.57 -13.32 9.20 -308.27 -2.84 -16.16 16 7 C 0.37 11.48 7.51 85.14 0.64 12.12 16 8 O -0.33 -11.33 9.93 -87.26 -0.87 -12.20 16 9 C 0.04 0.98 10.38 113.37 1.18 2.15 16 10 C -0.27 -8.57 5.66 -19.83 -0.11 -8.68 16 11 C 0.58 23.11 6.42 86.61 0.56 23.66 16 12 O -0.59 -28.49 17.11 -4.11 -0.07 -28.56 16 13 N -0.70 -25.04 5.55 -466.56 -2.59 -27.63 16 14 C 0.16 6.55 5.50 86.38 0.48 7.02 16 15 C -0.13 -4.59 4.17 -10.46 -0.04 -4.64 16 16 C 0.13 5.13 8.26 83.18 0.69 5.82 16 17 N -0.64 -34.20 3.62 -738.46 -2.68 -36.87 16 18 C -0.23 -13.36 10.75 84.03 0.90 -12.46 16 19 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 21 N -0.95 -59.94 11.51 21.65 0.25 -59.69 16 22 Si 0.98 48.17 29.55 68.60 2.03 50.20 16 23 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 C 0.16 7.49 6.90 83.18 0.57 8.07 16 27 H 0.08 0.44 7.71 -2.39 -0.02 0.43 16 28 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 0.37 7.71 -2.39 -0.02 0.35 16 30 H 0.19 0.86 6.45 -2.91 -0.02 0.84 16 31 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 35 H 0.41 12.29 8.46 -92.71 -0.78 11.51 16 36 H 0.03 1.55 7.92 -2.38 -0.02 1.53 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.12 3.31 8.14 -2.39 -0.02 3.30 16 39 H 0.05 1.94 8.12 -2.38 -0.02 1.92 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 43 H 0.04 1.98 7.10 -2.39 -0.02 1.96 16 Total: -1.00 -87.85 368.41 0.35 -87.50 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.25 Total: 15.17 kcal Atomic # 6 Polarization: 28.47 SS G_CDS: 7.74 Total: 36.21 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -7.85 Total: -140.36 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.82 Total: -48.72 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -87.85 0.35 -87.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031843420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.736 kcal (2) G-P(sol) polarization free energy of solvation -87.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds