Wall clock time and date at job start Tue Mar 31 2020 13:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35709 * 116.99820 * 2 1 4 4 C 1.41925 * 126.87628 * 179.97438 * 3 2 1 5 5 C 1.35275 * 103.95822 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.70766 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46844 * 90.00555 * 6 5 4 8 8 C 1.50705 * 109.47212 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99854 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.47865 * 126.94541 * 0.02708 * 10 8 7 12 12 C 1.56027 * 105.19053 * 181.92873 * 11 10 8 13 13 H 1.08998 * 116.24496 * 158.88489 * 12 11 10 14 14 C 1.57351 * 99.49166 * 32.80804 * 12 11 10 15 15 C 1.49288 * 126.94170 * 179.97438 * 10 8 7 16 16 H 1.08999 * 116.15211 * 16.72295 * 15 10 8 17 17 C 1.56023 * 104.09388 * 247.58310 * 15 10 8 18 18 N 1.49295 * 104.08833 * 288.81697 * 12 11 10 19 19 C 1.36939 * 126.94218 * 246.69708 * 18 12 11 20 20 H 1.08000 * 119.99491 * 359.97438 * 19 18 12 21 21 C 1.38809 * 119.99915 * 180.02562 * 19 18 12 22 22 N 1.31621 * 119.99993 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47399 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47052 * 119.99960 * 23 21 19 26 26 H 1.48503 * 109.46638 * 239.99522 * 23 21 19 27 27 O 1.34085 * 106.58011 * 0.24503 * 5 4 3 28 28 N 1.20911 * 111.71873 * 359.56243 * 27 5 4 29 29 H 1.09003 * 109.47348 * 60.00415 * 1 2 3 30 30 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47359 * 300.00286 * 1 2 3 32 32 H 1.08004 * 128.02228 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.47464 * 330.00842 * 6 5 4 34 34 H 1.08998 * 109.47328 * 210.00131 * 6 5 4 35 35 H 1.08993 * 109.47572 * 59.99593 * 7 6 5 36 36 H 1.09003 * 109.47304 * 299.99370 * 7 6 5 37 37 H 1.09002 * 110.31619 * 300.88599 * 11 10 8 38 38 H 1.09004 * 110.31674 * 62.97150 * 11 10 8 39 39 H 1.08990 * 112.35285 * 191.71714 * 14 12 11 40 40 H 1.09005 * 112.44362 * 64.31026 * 14 12 11 41 41 H 1.08995 * 110.31456 * 47.67174 * 17 15 10 42 42 H 1.08991 * 110.31823 * 169.86439 * 17 15 10 43 43 H 0.96998 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4527 0.0005 5 6 3.5396 2.8020 -0.0003 6 6 4.8088 3.6145 0.0003 7 6 5.2395 3.8886 -1.4420 8 6 6.5090 4.7007 -1.4415 9 8 7.0188 5.0283 -0.3910 10 7 7.0779 5.0627 -2.6085 11 6 6.5911 4.7500 -3.9692 12 6 7.6511 5.3661 -4.9342 13 1 7.6796 4.9563 -5.9439 14 6 8.9436 5.1720 -4.0580 15 6 8.3262 5.8615 -2.7884 16 1 8.9740 5.9435 -1.9157 17 6 7.8315 7.2048 -3.4091 18 7 7.4416 6.8391 -4.8115 19 6 6.9785 7.6882 -5.7810 20 1 6.7227 7.3043 -6.7576 21 6 6.8390 9.0421 -5.5089 22 7 7.1513 9.5099 -4.3189 23 14 6.2066 10.2002 -6.8313 24 1 5.9285 9.4314 -8.0709 25 1 4.9578 10.8524 -6.3621 26 1 7.2315 11.2376 -7.1120 27 8 2.2850 3.2751 0.0043 28 7 1.4700 2.3819 -0.0009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.2447 0.7286 0.0006 33 1 5.5942 3.0612 0.5151 34 1 4.6345 4.5603 0.5133 35 1 4.4541 4.4419 -1.9569 36 1 5.4139 2.9429 -1.9551 37 1 6.5319 3.6709 -4.1113 38 1 5.6159 5.2072 -4.1367 39 1 9.7985 5.7204 -4.4533 40 1 9.1767 4.1210 -3.8873 41 1 6.9784 7.5886 -2.8498 42 1 8.6388 7.9370 -3.4193 43 1 7.0534 10.4560 -4.1287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032426897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:19 Heat of formation + Delta-G solvation = 52.543907 kcal Electronic energy + Delta-G solvation = -26863.066077 eV Core-core repulsion = 22914.428436 eV Total energy + Delta-G solvation = -3948.637640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.06203 -40.07438 -39.07049 -38.04646 -34.75702 -33.59571 -32.99620 -31.66667 -30.42518 -29.03192 -28.51801 -27.87344 -25.35985 -25.03540 -23.58953 -23.25042 -21.36444 -20.40986 -19.87700 -18.47518 -18.12997 -17.82647 -17.13441 -16.93743 -16.29778 -15.82759 -15.74865 -15.54271 -15.21221 -14.68798 -14.12320 -14.02008 -13.86716 -13.40709 -13.05460 -12.80338 -12.49733 -12.39486 -12.14404 -12.12456 -11.91935 -11.67640 -11.53905 -11.31765 -11.06408 -11.04746 -10.89153 -10.80595 -10.61742 -10.29916 -10.06893 -9.82668 -9.63864 -9.52966 -9.36488 -8.75220 -8.05796 -6.96400 -5.79346 -3.13601 1.21874 2.06799 2.51386 2.89285 2.97437 3.35742 3.39609 3.40995 3.44127 4.00528 4.39219 4.53115 4.72198 4.74823 4.82329 4.82791 4.86370 4.97510 5.12585 5.15223 5.18546 5.24532 5.35394 5.43295 5.53379 5.58781 5.60951 5.73905 5.78878 5.88294 5.92027 6.14371 6.24381 6.37370 6.44871 6.55814 6.64886 6.71749 7.38848 7.43644 7.67967 8.01893 8.05164 8.05922 8.50822 9.04681 9.68113 10.36484 11.33228 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002715 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.657939 B =10310.376892 C =11069.930051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.236 4.236 5 C 0.008 3.992 6 C -0.026 4.026 7 C -0.133 4.133 8 C 0.529 3.471 9 O -0.557 6.557 10 N -0.605 5.605 11 C 0.082 3.918 12 C 0.142 3.858 13 H 0.107 0.893 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.112 0.888 17 C 0.176 3.824 18 N -0.600 5.600 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 O 0.101 5.899 28 N -0.412 5.412 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.178 0.822 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -17.887 6.439 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.258 4.258 5 C -0.056 4.056 6 C -0.064 4.064 7 C -0.174 4.174 8 C 0.318 3.682 9 O -0.437 6.437 10 N -0.338 5.338 11 C -0.044 4.044 12 C 0.034 3.966 13 H 0.124 0.876 14 C -0.191 4.191 15 C -0.006 4.006 16 H 0.130 0.870 17 C 0.051 3.949 18 N -0.325 5.325 19 C -0.359 4.359 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 O 0.041 5.959 28 N -0.138 5.138 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.830 -17.335 7.014 19.909 hybrid contribution -0.164 0.220 -0.708 0.760 sum -6.994 -17.115 6.306 19.535 Atomic orbital electron populations 1.23057 0.76930 1.03976 1.02383 1.86181 1.22518 1.21027 1.89465 1.22025 0.90975 0.85689 1.00443 1.21793 0.94221 0.95700 1.14069 1.24432 0.88306 0.93236 0.99614 1.19973 0.88337 1.00546 0.97586 1.21599 0.96991 1.01575 0.97191 1.19913 0.85381 0.80239 0.82678 1.90677 1.65021 1.57432 1.30525 1.49218 1.26419 1.52752 1.05422 1.23335 1.00382 0.98176 0.82488 1.23175 0.91117 0.86631 0.95725 0.87555 1.24199 0.98848 0.99248 0.96782 1.24365 0.85318 0.93852 0.97014 0.86973 1.22299 0.98927 0.89863 0.83781 1.45777 1.76405 1.00561 1.09751 1.19100 1.36637 0.88178 0.91964 0.90143 1.24811 1.01596 0.96903 0.97007 1.69909 1.53507 1.13303 1.19886 0.86053 0.78124 0.81001 0.80585 1.20486 1.21774 1.21746 1.84827 1.12331 1.29933 1.68799 1.74145 1.15810 0.96686 1.27200 0.92230 0.87732 0.92303 0.80417 0.87341 0.88024 0.88325 0.88674 0.92788 0.91007 0.89805 0.91656 0.93215 0.92367 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.33 16 2 O -0.29 -3.14 10.57 -18.83 -0.20 -3.34 16 3 C 0.21 2.51 8.01 -16.66 -0.13 2.38 16 4 C -0.24 -2.46 11.10 -39.23 -0.44 -2.90 16 5 C 0.01 0.09 6.73 -35.36 -0.24 -0.15 16 6 C -0.03 -0.27 5.07 -27.88 -0.14 -0.41 16 7 C -0.13 -1.57 4.97 -27.88 -0.14 -1.71 16 8 C 0.53 8.58 7.90 -10.98 -0.09 8.49 16 9 O -0.56 -10.60 16.33 5.56 0.09 -10.51 16 10 N -0.61 -10.31 2.94 -156.76 -0.46 -10.77 16 11 C 0.08 1.29 6.00 -1.67 -0.01 1.28 16 12 C 0.14 2.51 5.54 -62.39 -0.35 2.16 16 13 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.15 -2.42 6.83 -22.13 -0.15 -2.57 16 15 C 0.10 1.78 5.18 -62.53 -0.32 1.46 16 16 H 0.11 2.01 8.06 -51.93 -0.42 1.59 16 17 C 0.18 4.07 4.87 -0.42 0.00 4.07 16 18 N -0.60 -13.96 3.06 -154.36 -0.47 -14.44 16 19 C -0.23 -6.00 10.38 -15.06 -0.16 -6.16 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.35 10.57 55.49 0.59 -25.77 16 23 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 O 0.10 1.30 11.19 17.06 0.19 1.49 16 28 N -0.41 -5.47 11.54 30.38 0.35 -5.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.33 7.73 -51.93 -0.40 0.93 16 42 H 0.06 1.49 7.47 -51.93 -0.39 1.10 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.23 360.95 -6.92 -39.15 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.25 Total: 0.46 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.17 Total: 6.99 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.00 Total: -56.10 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.23 -6.92 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032426897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.689 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds