Wall clock time and date at job start Tue Mar 31 2020 13:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35709 * 116.99820 * 2 1 4 4 C 1.41925 * 126.87628 * 179.97438 * 3 2 1 5 5 C 1.35275 * 103.95822 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.70766 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46844 * 90.00555 * 6 5 4 8 8 C 1.50705 * 109.47212 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99854 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.47865 * 126.94541 * 0.02708 * 10 8 7 12 12 C 1.56027 * 105.19053 * 181.92873 * 11 10 8 13 13 H 1.08998 * 116.24496 * 158.88489 * 12 11 10 14 14 C 1.57351 * 99.49166 * 32.80804 * 12 11 10 15 15 C 1.49288 * 126.94170 * 179.97438 * 10 8 7 16 16 H 1.08999 * 116.15211 * 16.72295 * 15 10 8 17 17 C 1.56023 * 104.09388 * 247.58310 * 15 10 8 18 18 N 1.49295 * 104.08833 * 288.81697 * 12 11 10 19 19 C 1.36939 * 126.94218 * 246.69708 * 18 12 11 20 20 H 1.08000 * 119.99491 * 359.97438 * 19 18 12 21 21 C 1.38809 * 119.99915 * 180.02562 * 19 18 12 22 22 N 1.31621 * 119.99993 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47399 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47052 * 119.99960 * 23 21 19 26 26 H 1.48503 * 109.46638 * 239.99522 * 23 21 19 27 27 O 1.34085 * 106.58011 * 0.24503 * 5 4 3 28 28 N 1.20911 * 111.71873 * 359.56243 * 27 5 4 29 29 H 1.09003 * 109.47348 * 60.00415 * 1 2 3 30 30 H 1.09007 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47359 * 300.00286 * 1 2 3 32 32 H 1.08004 * 128.02228 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.47464 * 330.00842 * 6 5 4 34 34 H 1.08998 * 109.47328 * 210.00131 * 6 5 4 35 35 H 1.08993 * 109.47572 * 59.99593 * 7 6 5 36 36 H 1.09003 * 109.47304 * 299.99370 * 7 6 5 37 37 H 1.09002 * 110.31619 * 300.88599 * 11 10 8 38 38 H 1.09004 * 110.31674 * 62.97150 * 11 10 8 39 39 H 1.08990 * 112.35285 * 191.71714 * 14 12 11 40 40 H 1.09005 * 112.44362 * 64.31026 * 14 12 11 41 41 H 1.08995 * 110.31456 * 47.67174 * 17 15 10 42 42 H 1.08991 * 110.31823 * 169.86439 * 17 15 10 43 43 H 0.96998 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4527 0.0005 5 6 3.5396 2.8020 -0.0003 6 6 4.8088 3.6145 0.0003 7 6 5.2395 3.8886 -1.4420 8 6 6.5090 4.7007 -1.4415 9 8 7.0188 5.0283 -0.3910 10 7 7.0779 5.0627 -2.6085 11 6 6.5911 4.7500 -3.9692 12 6 7.6511 5.3661 -4.9342 13 1 7.6796 4.9563 -5.9439 14 6 8.9436 5.1720 -4.0580 15 6 8.3262 5.8615 -2.7884 16 1 8.9740 5.9435 -1.9157 17 6 7.8315 7.2048 -3.4091 18 7 7.4416 6.8391 -4.8115 19 6 6.9785 7.6882 -5.7810 20 1 6.7227 7.3043 -6.7576 21 6 6.8390 9.0421 -5.5089 22 7 7.1513 9.5099 -4.3189 23 14 6.2066 10.2002 -6.8313 24 1 5.9285 9.4314 -8.0709 25 1 4.9578 10.8524 -6.3621 26 1 7.2315 11.2376 -7.1120 27 8 2.2850 3.2751 0.0043 28 7 1.4700 2.3819 -0.0009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.2447 0.7286 0.0006 33 1 5.5942 3.0612 0.5151 34 1 4.6345 4.5603 0.5133 35 1 4.4541 4.4419 -1.9569 36 1 5.4139 2.9429 -1.9551 37 1 6.5319 3.6709 -4.1113 38 1 5.6159 5.2072 -4.1367 39 1 9.7985 5.7204 -4.4533 40 1 9.1767 4.1210 -3.8873 41 1 6.9784 7.5886 -2.8498 42 1 8.6388 7.9370 -3.4193 43 1 7.0534 10.4560 -4.1287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032426897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:18 Heat of formation + Delta-G solvation = 30.440115 kcal Electronic energy + Delta-G solvation = -26864.024569 eV Core-core repulsion = 22914.428436 eV Total energy + Delta-G solvation = -3949.596133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.95020 -41.47775 -39.84772 -39.42880 -35.70108 -35.36762 -33.88248 -33.26350 -31.55311 -30.49978 -30.13830 -28.54280 -26.91452 -26.27475 -24.83713 -24.41854 -22.33433 -21.73226 -21.37276 -19.92330 -19.15412 -18.72769 -18.61051 -17.79706 -17.68612 -17.31746 -16.79432 -16.48755 -16.27233 -16.01679 -15.68028 -15.27272 -14.92776 -14.77601 -14.32299 -13.90826 -13.60728 -13.53271 -13.41319 -13.18383 -13.10337 -12.99484 -12.85242 -12.77885 -12.72042 -12.44359 -12.26840 -12.08904 -11.97444 -11.92213 -11.84006 -11.46751 -10.97481 -10.72646 -10.50113 -10.30366 -9.48139 -8.88143 -7.82751 -5.17310 0.35554 1.21920 1.47675 1.47993 1.57932 1.69700 1.74748 1.96406 2.25234 2.49782 3.17421 3.34491 3.38207 3.56805 3.79893 3.86411 3.91914 3.95639 4.03016 4.07532 4.20652 4.22796 4.25328 4.26784 4.44150 4.56508 4.60472 4.65438 4.76305 4.84454 4.89158 4.93269 5.00626 5.06348 5.09567 5.18407 5.30464 5.48596 5.56825 5.68315 5.93382 6.09967 6.74108 7.02579 7.17746 7.21640 7.72099 8.43715 9.28880 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002715 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.657939 B =10310.376892 C =11069.930051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.197 3.803 4 C -0.226 4.226 5 C 0.009 3.991 6 C -0.018 4.018 7 C -0.122 4.122 8 C 0.524 3.476 9 O -0.590 6.590 10 N -0.611 5.611 11 C 0.090 3.910 12 C 0.134 3.866 13 H 0.134 0.866 14 C -0.128 4.128 15 C 0.101 3.899 16 H 0.114 0.886 17 C 0.186 3.814 18 N -0.621 5.621 19 C -0.225 4.225 20 H 0.095 0.905 21 C -0.073 4.073 22 N -0.957 5.957 23 Si 0.973 3.027 24 H -0.259 1.259 25 H -0.301 1.301 26 H -0.298 1.298 27 O 0.082 5.918 28 N -0.434 5.434 29 H 0.055 0.945 30 H 0.136 0.864 31 H 0.056 0.944 32 H 0.207 0.793 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.000 1.000 42 H 0.019 0.981 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 -21.543 5.280 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C -0.001 4.001 4 C -0.248 4.248 5 C -0.054 4.054 6 C -0.056 4.056 7 C -0.162 4.162 8 C 0.315 3.685 9 O -0.472 6.472 10 N -0.343 5.343 11 C -0.034 4.034 12 C 0.027 3.973 13 H 0.152 0.848 14 C -0.167 4.167 15 C -0.003 4.003 16 H 0.131 0.869 17 C 0.061 3.939 18 N -0.346 5.346 19 C -0.354 4.354 20 H 0.112 0.888 21 C -0.266 4.266 22 N -0.607 5.607 23 Si 0.803 3.197 24 H -0.183 1.183 25 H -0.229 1.229 26 H -0.225 1.225 27 O 0.024 5.976 28 N -0.163 5.163 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.224 0.776 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.018 0.982 42 H 0.037 0.963 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.917 -21.055 5.822 22.914 hybrid contribution -0.160 1.285 -0.326 1.335 sum -7.077 -19.771 5.496 21.707 Atomic orbital electron populations 1.23300 0.75466 1.05994 1.02076 1.86183 1.24046 1.20487 1.89303 1.22383 0.91887 0.85802 1.00028 1.22152 0.94162 0.95780 1.12665 1.24460 0.87682 0.93502 0.99782 1.19900 0.88570 1.00220 0.96927 1.21576 0.94165 1.02110 0.98300 1.20692 0.86121 0.79925 0.81763 1.90663 1.66131 1.58732 1.31649 1.49315 1.26063 1.52523 1.06444 1.23225 0.98349 1.00828 0.81009 1.23627 0.92489 0.83172 0.97966 0.84802 1.24092 0.97573 1.01052 0.94031 1.24140 0.86433 0.91623 0.98061 0.86858 1.21900 0.95706 0.91938 0.84380 1.46043 1.76195 1.03311 1.09066 1.19572 1.34301 0.88618 0.92883 0.88775 1.25617 1.03292 0.98846 0.98833 1.70146 1.55957 1.12649 1.21949 0.85067 0.76636 0.78957 0.79044 1.18282 1.22887 1.22533 1.84795 1.13127 1.30273 1.69429 1.74138 1.16486 0.97300 1.28390 0.92601 0.84588 0.92554 0.77618 0.85863 0.89338 0.88502 0.85336 0.87603 0.92976 0.90486 0.87626 0.98196 0.96326 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.73 113.37 1.22 1.58 16 2 O -0.29 -5.92 10.57 -90.30 -0.95 -6.87 16 3 C 0.20 4.45 8.01 85.79 0.69 5.14 16 4 C -0.23 -4.09 11.10 22.50 0.25 -3.84 16 5 C 0.01 0.18 6.73 25.00 0.17 0.35 16 6 C -0.02 -0.34 5.07 29.85 0.15 -0.19 16 7 C -0.12 -2.53 4.97 29.85 0.15 -2.39 16 8 C 0.52 16.14 7.90 87.66 0.69 16.83 16 9 O -0.59 -22.14 16.33 -3.02 -0.05 -22.19 16 10 N -0.61 -19.70 2.94 -768.25 -2.26 -21.95 16 11 C 0.09 2.55 6.00 87.17 0.52 3.07 16 12 C 0.13 4.31 5.54 47.03 0.26 4.57 16 13 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 14 C -0.13 -3.73 6.83 33.57 0.23 -3.50 16 15 C 0.10 3.65 5.18 46.94 0.24 3.90 16 16 H 0.11 4.07 8.06 -2.39 -0.02 4.05 16 17 C 0.19 9.01 4.87 86.73 0.42 9.44 16 18 N -0.62 -28.89 3.06 -642.26 -1.97 -30.86 16 19 C -0.22 -11.70 10.38 84.03 0.87 -10.82 16 20 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 22 N -0.96 -57.89 10.57 21.65 0.23 -57.66 16 23 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 O 0.08 2.06 11.19 71.22 0.80 2.86 16 28 N -0.43 -11.21 11.54 -172.61 -1.99 -13.20 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.14 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.12 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.09 1.94 8.10 -2.39 -0.02 1.93 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.00 -0.01 7.73 -2.39 -0.02 -0.03 16 42 H 0.02 1.02 7.47 -2.39 -0.02 1.00 16 43 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -74.64 360.95 3.18 -71.46 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.02 Total: 10.83 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.33 Total: 20.51 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.99 Total: -123.67 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.21 Total: -26.21 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.64 3.18 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032426897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.901 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds