Wall clock time and date at job start Tue Mar 31 2020 13:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36004 * 117.00286 * 2 1 4 4 C 1.35851 * 120.31640 * 0.02562 * 3 2 1 5 5 N 1.35439 * 120.77773 * 180.02562 * 4 3 2 6 6 H 0.97003 * 119.29343 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41030 * 359.95124 * 5 4 3 8 8 C 1.48074 * 119.71524 * 180.02562 * 7 5 4 9 9 O 1.21521 * 119.99450 * 206.15241 * 8 7 5 10 10 N 1.34774 * 120.00053 * 26.15902 * 8 7 5 11 11 C 1.46493 * 120.00085 * 356.12449 * 10 8 7 12 12 C 1.46507 * 119.99805 * 176.12776 * 10 8 7 13 13 H 1.09002 * 110.77711 * 356.75952 * 12 10 8 14 14 C 1.55155 * 110.71839 * 119.99780 * 12 10 8 15 15 C 1.54917 * 101.61473 * 153.84535 * 14 12 10 16 16 N 1.47465 * 104.81068 * 323.04263 * 15 14 12 17 17 C 1.36928 * 125.63001 * 204.04790 * 16 15 14 18 18 H 1.08002 * 120.00684 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00094 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00447 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47179 * 90.00250 * 21 19 17 23 23 H 1.48498 * 109.47302 * 210.00388 * 21 19 17 24 24 H 1.48503 * 109.46946 * 330.00193 * 21 19 17 25 25 C 1.47031 * 108.72252 * 24.07195 * 16 15 14 26 26 C 1.36170 * 120.56187 * 0.30154 * 7 5 4 27 27 C 1.41572 * 120.31278 * 179.97438 * 3 2 1 28 28 O 1.22261 * 120.65917 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47243 * 300.00268 * 1 2 3 31 31 H 1.09000 * 109.46501 * 59.99909 * 1 2 3 32 32 H 1.08006 * 119.60813 * 359.97393 * 4 3 2 33 33 H 1.08995 * 109.47297 * 270.86225 * 11 10 8 34 34 H 1.08995 * 109.47110 * 30.87100 * 11 10 8 35 35 H 1.09003 * 109.47096 * 150.86669 * 11 10 8 36 36 H 1.09004 * 111.00517 * 271.93334 * 14 12 10 37 37 H 1.08995 * 111.00517 * 35.75653 * 14 12 10 38 38 H 1.09001 * 110.36179 * 81.84900 * 15 14 12 39 39 H 1.08996 * 110.36464 * 204.16699 * 15 14 12 40 40 H 0.96997 * 120.00531 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.87532 * 239.55758 * 25 16 15 42 42 H 1.08996 * 109.88061 * 118.39259 * 25 16 15 43 43 H 1.08000 * 120.40680 * 179.73049 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3130 2.3552 0.0005 5 7 1.9182 3.5669 0.0000 6 1 1.3735 4.3695 0.0000 7 6 3.2775 3.6827 -0.0001 8 6 3.8997 5.0263 -0.0001 9 8 5.0122 5.1807 -0.4640 10 7 3.2322 6.0780 0.5146 11 6 1.8591 5.9095 0.9963 12 6 3.8800 7.3899 0.5921 13 1 4.9125 7.3323 0.2475 14 6 3.0863 8.4431 -0.2253 15 6 3.4710 9.7562 0.5010 16 7 3.5485 9.3894 1.9272 17 6 3.3981 10.2500 2.9815 18 1 3.4733 9.8820 3.9941 19 6 3.1490 11.5956 2.7489 20 7 3.0569 12.0442 1.5150 21 14 2.9431 12.7698 4.1872 22 1 4.2654 13.3341 4.5587 23 1 2.0260 13.8714 3.7995 24 1 2.3742 12.0370 5.3468 25 6 3.8145 7.9469 2.0297 26 6 4.0669 2.5731 -0.0058 27 6 3.4599 1.2935 0.0005 28 8 4.1430 0.2796 0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 0.2345 2.2973 0.0005 33 1 1.1624 6.0841 0.1765 34 1 1.7286 4.8956 1.3744 35 1 1.6647 6.6235 1.7967 36 1 3.4155 8.4604 -1.2643 37 1 2.0137 8.2606 -0.1605 38 1 4.4381 10.1151 0.1488 39 1 2.7041 10.5148 0.3448 40 1 2.8825 12.9844 1.3524 41 1 3.0093 7.4598 2.5798 42 1 4.7655 7.7804 2.5356 43 1 5.1428 2.6677 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033270266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:29 Heat of formation + Delta-G solvation = 2.015839 kcal Electronic energy + Delta-G solvation = -27201.819901 eV Core-core repulsion = 23250.991199 eV Total energy + Delta-G solvation = -3950.828702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88872 -40.14003 -38.43966 -37.87032 -37.58616 -35.20421 -32.43779 -31.86473 -30.98375 -29.40781 -28.15253 -27.67080 -27.31258 -25.06518 -23.97105 -23.43463 -21.43795 -20.39370 -20.00117 -18.94846 -18.38101 -17.57731 -17.10674 -16.70798 -16.48561 -16.32708 -15.70246 -15.44310 -14.84990 -14.75425 -14.47928 -14.40875 -14.26265 -13.86088 -13.54738 -13.48084 -13.24460 -13.04486 -12.61766 -12.33067 -12.01662 -11.84345 -11.73953 -11.70511 -11.24038 -11.08576 -10.91717 -10.73946 -10.28650 -10.21294 -9.99146 -9.75708 -9.68979 -9.66880 -8.81791 -8.76181 -7.92334 -7.00090 -5.78986 -3.22143 0.48609 0.90111 2.22744 2.44126 2.73490 2.93235 3.31734 3.37164 3.38659 3.46688 3.83249 4.11202 4.35279 4.37788 4.51248 4.65975 4.74128 4.76812 4.85604 5.08908 5.17558 5.24152 5.27068 5.33474 5.36652 5.46112 5.50521 5.65063 5.88695 5.94159 6.08313 6.25365 6.29382 6.37136 6.38937 6.50160 6.68562 6.88411 7.08317 7.34836 7.48051 7.69288 7.72830 7.80960 8.20028 9.07137 9.67572 10.30146 11.24760 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002608 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.335668 B =10732.397869 C =11135.940998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.289 6.289 3 C -0.033 4.033 4 C 0.022 3.978 5 N -0.571 5.571 6 H 0.428 0.572 7 C 0.132 3.868 8 C 0.554 3.446 9 O -0.504 6.504 10 N -0.591 5.591 11 C 0.037 3.963 12 C 0.124 3.876 13 H 0.110 0.890 14 C -0.151 4.151 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 C -0.217 4.217 27 C 0.401 3.599 28 O -0.498 6.498 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.111 0.889 40 H 0.254 0.746 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 -16.744 -4.172 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.105 4.105 5 N -0.193 5.193 6 H 0.275 0.725 7 C 0.019 3.981 8 C 0.339 3.661 9 O -0.377 6.377 10 N -0.323 5.323 11 C -0.106 4.106 12 C 0.022 3.978 13 H 0.128 0.872 14 C -0.191 4.191 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.001 3.999 26 C -0.244 4.244 27 C 0.291 3.709 28 O -0.382 6.382 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.187 0.813 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.125 -17.165 -4.375 19.926 hybrid contribution -0.834 1.161 0.759 1.618 sum -9.959 -16.005 -3.616 19.194 Atomic orbital electron populations 1.23137 0.79145 1.04524 1.00951 1.86277 1.20340 1.24372 1.89034 1.20440 0.94822 0.84685 1.08462 1.21716 0.98860 0.84477 1.05428 1.42095 1.05443 1.09192 1.62597 0.72491 1.20383 0.83027 0.95706 0.98970 1.17996 0.85834 0.82716 0.79540 1.90863 1.18529 1.83498 1.44851 1.47869 1.14458 1.09864 1.60111 1.22431 0.82760 1.03937 1.01519 1.22437 0.98162 0.79188 0.98027 0.87245 1.23396 0.99269 0.97709 0.98697 1.21977 1.00960 0.92494 0.81812 1.44438 1.84042 1.01554 1.02787 1.19053 1.41734 0.88552 0.86118 0.90384 1.24800 1.01951 0.96850 0.96802 1.69764 1.55738 1.14085 1.17355 0.86054 0.77652 0.80611 0.81040 1.21491 1.21586 1.20657 1.21536 0.98301 0.87276 0.92746 1.22430 1.02161 0.90360 1.09464 1.16778 0.86118 0.89768 0.78243 1.90857 1.65725 1.37529 1.44121 0.87904 0.92682 0.92748 0.81327 0.91488 0.90072 0.87730 0.91758 0.91766 0.96486 0.87122 0.93546 0.95282 0.95297 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.19 10.33 -35.58 -0.37 -3.56 16 3 C -0.03 -0.36 6.71 -39.17 -0.26 -0.63 16 4 C 0.02 0.15 10.22 -16.82 -0.17 -0.02 16 5 N -0.57 -4.18 3.94 -9.58 -0.04 -4.21 16 6 H 0.43 2.11 4.57 -40.82 -0.19 1.93 16 7 C 0.13 1.44 6.27 -82.53 -0.52 0.92 16 8 C 0.55 7.36 7.55 -12.23 -0.09 7.27 16 9 O -0.50 -8.49 15.94 5.35 0.09 -8.40 16 10 N -0.59 -7.36 2.89 -172.87 -0.50 -7.86 16 11 C 0.04 0.31 7.64 59.84 0.46 0.76 16 12 C 0.12 2.00 3.35 -66.10 -0.22 1.78 16 13 H 0.11 1.93 7.02 -51.93 -0.36 1.56 16 14 C -0.15 -2.53 6.65 -24.58 -0.16 -2.69 16 15 C 0.15 3.40 5.89 -2.50 -0.01 3.39 16 16 N -0.60 -14.19 3.40 -170.04 -0.58 -14.77 16 17 C -0.23 -5.92 10.27 -15.06 -0.15 -6.08 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -25.42 10.09 55.49 0.56 -24.86 16 21 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.13 2.42 6.80 -3.06 -0.02 2.40 16 26 C -0.22 -2.79 9.52 -39.03 -0.37 -3.17 16 27 C 0.40 5.76 6.78 -37.02 -0.25 5.51 16 28 O -0.50 -9.12 17.71 -11.15 -0.20 -9.32 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.19 7.66 -51.93 -0.40 -0.20 16 31 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 32 H 0.17 0.49 6.21 -52.48 -0.33 0.16 16 33 H 0.07 0.39 7.38 -51.93 -0.38 0.01 16 34 H 0.08 0.50 5.25 -51.93 -0.27 0.23 16 35 H 0.10 1.04 6.09 -51.93 -0.32 0.72 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.98 7.31 -51.93 -0.38 0.60 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 2.78 5.88 -51.93 -0.31 2.48 16 40 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.03 0.51 5.94 -51.93 -0.31 0.21 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.17 2.22 7.80 -52.49 -0.41 1.81 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -34.91 345.59 -7.02 -41.93 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.28 Total: -0.37 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.89 Total: 10.22 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.55 Total: -51.70 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.48 Total: -21.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.91 -7.02 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033270266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.948 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds