Wall clock time and date at job start Tue Mar 31 2020 13:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36004 * 117.00286 * 2 1 4 4 C 1.35851 * 120.31640 * 0.02562 * 3 2 1 5 5 N 1.35439 * 120.77773 * 180.02562 * 4 3 2 6 6 H 0.97003 * 119.29343 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41030 * 359.95124 * 5 4 3 8 8 C 1.48074 * 119.71524 * 180.02562 * 7 5 4 9 9 O 1.21521 * 119.99450 * 206.15241 * 8 7 5 10 10 N 1.34774 * 120.00053 * 26.15902 * 8 7 5 11 11 C 1.46493 * 120.00085 * 356.12449 * 10 8 7 12 12 C 1.46507 * 119.99805 * 176.12776 * 10 8 7 13 13 H 1.09002 * 110.77711 * 356.75952 * 12 10 8 14 14 C 1.55155 * 110.71839 * 119.99780 * 12 10 8 15 15 C 1.54917 * 101.61473 * 153.84535 * 14 12 10 16 16 N 1.47465 * 104.81068 * 323.04263 * 15 14 12 17 17 C 1.36928 * 125.63001 * 204.04790 * 16 15 14 18 18 H 1.08002 * 120.00684 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00094 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00447 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47179 * 90.00250 * 21 19 17 23 23 H 1.48498 * 109.47302 * 210.00388 * 21 19 17 24 24 H 1.48503 * 109.46946 * 330.00193 * 21 19 17 25 25 C 1.47031 * 108.72252 * 24.07195 * 16 15 14 26 26 C 1.36170 * 120.56187 * 0.30154 * 7 5 4 27 27 C 1.41572 * 120.31278 * 179.97438 * 3 2 1 28 28 O 1.22261 * 120.65917 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47243 * 300.00268 * 1 2 3 31 31 H 1.09000 * 109.46501 * 59.99909 * 1 2 3 32 32 H 1.08006 * 119.60813 * 359.97393 * 4 3 2 33 33 H 1.08995 * 109.47297 * 270.86225 * 11 10 8 34 34 H 1.08995 * 109.47110 * 30.87100 * 11 10 8 35 35 H 1.09003 * 109.47096 * 150.86669 * 11 10 8 36 36 H 1.09004 * 111.00517 * 271.93334 * 14 12 10 37 37 H 1.08995 * 111.00517 * 35.75653 * 14 12 10 38 38 H 1.09001 * 110.36179 * 81.84900 * 15 14 12 39 39 H 1.08996 * 110.36464 * 204.16699 * 15 14 12 40 40 H 0.96997 * 120.00531 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.87532 * 239.55758 * 25 16 15 42 42 H 1.08996 * 109.88061 * 118.39259 * 25 16 15 43 43 H 1.08000 * 120.40680 * 179.73049 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3130 2.3552 0.0005 5 7 1.9182 3.5669 0.0000 6 1 1.3735 4.3695 0.0000 7 6 3.2775 3.6827 -0.0001 8 6 3.8997 5.0263 -0.0001 9 8 5.0122 5.1807 -0.4640 10 7 3.2322 6.0780 0.5146 11 6 1.8591 5.9095 0.9963 12 6 3.8800 7.3899 0.5921 13 1 4.9125 7.3323 0.2475 14 6 3.0863 8.4431 -0.2253 15 6 3.4710 9.7562 0.5010 16 7 3.5485 9.3894 1.9272 17 6 3.3981 10.2500 2.9815 18 1 3.4733 9.8820 3.9941 19 6 3.1490 11.5956 2.7489 20 7 3.0569 12.0442 1.5150 21 14 2.9431 12.7698 4.1872 22 1 4.2654 13.3341 4.5587 23 1 2.0260 13.8714 3.7995 24 1 2.3742 12.0370 5.3468 25 6 3.8145 7.9469 2.0297 26 6 4.0669 2.5731 -0.0058 27 6 3.4599 1.2935 0.0005 28 8 4.1430 0.2796 0.0006 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 0.2345 2.2973 0.0005 33 1 1.1624 6.0841 0.1765 34 1 1.7286 4.8956 1.3744 35 1 1.6647 6.6235 1.7967 36 1 3.4155 8.4604 -1.2643 37 1 2.0137 8.2606 -0.1605 38 1 4.4381 10.1151 0.1488 39 1 2.7041 10.5148 0.3448 40 1 2.8825 12.9844 1.3524 41 1 3.0093 7.4598 2.5798 42 1 4.7655 7.7804 2.5356 43 1 5.1428 2.6677 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033270266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:29 Heat of formation + Delta-G solvation = -22.691487 kcal Electronic energy + Delta-G solvation = -27202.891291 eV Core-core repulsion = 23250.991199 eV Total energy + Delta-G solvation = -3951.900092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.80071 -41.15245 -39.38094 -38.88252 -38.85436 -36.52339 -34.16184 -32.82248 -32.00356 -31.01032 -29.26267 -28.37841 -28.33038 -26.66734 -25.19482 -24.23350 -22.52341 -22.13480 -21.13582 -19.83899 -19.29272 -19.00363 -18.41044 -17.80144 -17.33647 -17.21354 -16.78136 -16.55326 -16.32034 -15.91565 -15.51676 -15.48660 -15.28668 -14.97917 -14.66380 -14.46915 -14.40193 -14.11278 -13.89308 -13.74066 -13.39825 -13.01056 -12.95841 -12.72266 -12.50156 -12.35064 -12.26064 -12.21156 -12.00892 -11.81415 -11.49788 -11.39820 -10.75912 -10.73053 -10.55113 -9.89633 -8.91198 -8.77134 -7.78055 -5.23190 -0.50386 0.12826 1.31506 1.35478 1.49307 1.50873 1.58876 1.81419 2.31600 2.50054 2.53203 2.93278 3.33061 3.53092 3.64083 3.67944 3.77978 3.83077 3.88524 3.91538 4.19373 4.34184 4.36093 4.42833 4.49638 4.50172 4.57748 4.62572 4.70994 4.84595 4.85313 4.97831 5.01099 5.05174 5.28924 5.46515 5.47899 5.59010 5.75966 5.78496 6.03728 6.28125 6.29490 6.65732 6.90453 7.09657 7.75713 8.37792 9.23407 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.002608 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.335668 B =10732.397869 C =11135.940998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.059 4.059 4 C 0.069 3.931 5 N -0.541 5.541 6 H 0.446 0.554 7 C 0.152 3.848 8 C 0.558 3.442 9 O -0.545 6.545 10 N -0.584 5.584 11 C 0.023 3.977 12 C 0.140 3.860 13 H 0.090 0.910 14 C -0.130 4.130 15 C 0.153 3.847 16 N -0.621 5.621 17 C -0.237 4.237 18 H 0.082 0.918 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.293 1.293 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.127 3.873 26 C -0.234 4.234 27 C 0.380 3.620 28 O -0.569 6.569 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.089 0.911 38 H -0.017 1.017 39 H 0.083 0.917 40 H 0.248 0.752 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 -17.120 -3.830 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.109 4.109 4 C -0.060 4.060 5 N -0.163 5.163 6 H 0.297 0.703 7 C 0.037 3.963 8 C 0.344 3.656 9 O -0.421 6.421 10 N -0.315 5.315 11 C -0.118 4.118 12 C 0.036 3.964 13 H 0.108 0.892 14 C -0.169 4.169 15 C 0.028 3.972 16 N -0.347 5.347 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.192 1.192 25 C 0.001 3.999 26 C -0.262 4.262 27 C 0.275 3.725 28 O -0.459 6.459 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.001 0.999 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.134 -17.528 -4.015 22.267 hybrid contribution 0.298 1.334 0.677 1.525 sum -12.836 -16.193 -3.338 20.931 Atomic orbital electron populations 1.23524 0.76189 1.06062 1.03146 1.86236 1.23444 1.24606 1.89451 1.20143 0.93533 0.86399 1.10814 1.22388 1.00795 0.82398 1.00392 1.42238 1.04082 1.10524 1.59474 0.70282 1.19830 0.84376 0.93529 0.98569 1.18177 0.85278 0.83317 0.78857 1.90859 1.20479 1.84115 1.46673 1.47776 1.15933 1.08074 1.59728 1.22840 0.80689 1.05365 1.02923 1.21940 0.97678 0.80843 0.95901 0.89168 1.23177 1.00750 0.94305 0.98654 1.21757 0.98340 0.94872 0.82217 1.44680 1.84003 1.03309 1.02746 1.19404 1.40800 0.89304 0.87106 0.90023 1.25570 1.02502 0.98407 0.99019 1.70002 1.56875 1.13811 1.18975 0.85093 0.77032 0.78503 0.78763 1.22019 1.21916 1.19169 1.21651 0.98273 0.85198 0.94794 1.22230 1.01829 0.90925 1.11190 1.17249 0.88083 0.89241 0.77882 1.90811 1.67284 1.39122 1.48724 0.87168 0.90249 0.90376 0.75482 0.87441 0.87459 0.88588 0.90294 0.89232 0.99870 0.89947 0.94230 0.92881 0.96643 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.62 10.33 -78.46 -0.81 -7.43 16 3 C -0.06 -1.18 6.71 22.54 0.15 -1.02 16 4 C 0.07 0.58 10.22 83.58 0.85 1.43 16 5 N -0.54 -5.00 3.94 -184.22 -0.73 -5.73 16 6 H 0.45 1.21 4.57 -92.71 -0.42 0.78 16 7 C 0.15 2.94 6.27 40.56 0.25 3.20 16 8 C 0.56 13.70 7.55 86.85 0.66 14.36 16 9 O -0.54 -18.33 15.94 -3.78 -0.06 -18.39 16 10 N -0.58 -12.65 2.89 -819.14 -2.36 -15.01 16 11 C 0.02 0.26 7.64 127.77 0.98 1.23 16 12 C 0.14 4.29 3.35 46.18 0.15 4.45 16 13 H 0.09 3.17 7.02 -2.39 -0.02 3.15 16 14 C -0.13 -4.06 6.65 31.99 0.21 -3.85 16 15 C 0.15 6.90 5.89 86.85 0.51 7.42 16 16 N -0.62 -29.19 3.40 -691.87 -2.35 -31.54 16 17 C -0.24 -12.38 10.27 84.03 0.86 -11.51 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 20 N -0.95 -53.25 10.09 21.65 0.22 -53.04 16 21 Si 0.98 43.18 29.55 68.60 2.03 45.20 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.13 4.64 6.80 86.73 0.59 5.23 16 26 C -0.23 -6.14 9.52 22.63 0.22 -5.92 16 27 C 0.38 11.22 6.78 23.93 0.16 11.38 16 28 O -0.57 -22.58 17.71 8.96 0.16 -22.42 16 29 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.12 7.66 -2.39 -0.02 0.10 16 31 H 0.08 0.13 7.66 -2.39 -0.02 0.11 16 32 H 0.23 -0.63 6.21 -2.91 -0.02 -0.65 16 33 H 0.11 0.45 7.38 -2.39 -0.02 0.43 16 34 H 0.11 0.63 5.25 -2.39 -0.01 0.62 16 35 H 0.10 1.41 6.09 -2.39 -0.01 1.40 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.38 7.31 -2.39 -0.02 2.36 16 38 H -0.02 -0.85 8.14 -2.39 -0.02 -0.86 16 39 H 0.08 4.21 5.88 -2.39 -0.01 4.20 16 40 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 41 H 0.05 1.72 5.94 -2.38 -0.01 1.70 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.15 4.31 7.80 -2.91 -0.02 4.29 16 Total: -1.00 -84.67 345.59 3.92 -80.76 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 0.64 Total: 2.92 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 7.18 Total: 24.67 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -5.22 Total: -105.32 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.71 Total: -48.24 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -84.67 3.92 -80.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033270266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.064 kcal (2) G-P(sol) polarization free energy of solvation -84.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds