Wall clock time and date at job start Tue Mar 31 2020 13:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35520 * 116.99570 * 2 1 4 4 C 1.38822 * 120.89740 * 0.20369 * 3 2 1 5 5 C 1.38711 * 119.19746 * 180.23671 * 4 3 2 6 6 O 1.35525 * 119.47405 * 179.78404 * 5 4 3 7 7 N 1.32591 * 121.05600 * 359.80206 * 5 4 3 8 8 C 1.31612 * 121.97807 * 359.97438 * 7 5 4 9 9 C 1.39544 * 120.66898 * 359.97438 * 8 7 5 10 10 C 1.47340 * 120.55831 * 180.02562 * 9 8 7 11 11 O 1.21618 * 120.00178 * 204.91902 * 10 9 8 12 12 N 1.34780 * 119.99765 * 24.91062 * 10 9 8 13 13 C 1.46502 * 120.00198 * 1.95752 * 12 10 9 14 14 C 1.46508 * 119.99803 * 181.95614 * 12 10 9 15 15 H 1.08998 * 110.77592 * 1.78820 * 14 12 10 16 16 C 1.55154 * 110.71733 * 125.02383 * 14 12 10 17 17 C 1.55128 * 101.48328 * 82.69888 * 16 14 12 18 18 N 1.47424 * 104.72600 * 37.29081 * 17 16 14 19 19 C 1.36934 * 125.65027 * 155.81843 * 18 17 16 20 20 H 1.07996 * 120.00133 * 190.57600 * 19 18 17 21 21 C 1.38816 * 119.99930 * 10.57538 * 19 18 17 22 22 N 1.31628 * 119.99950 * 9.14745 * 21 19 18 23 23 Si 1.86799 * 120.00063 * 189.14391 * 21 19 18 24 24 H 1.48497 * 109.46930 * 265.00846 * 23 21 19 25 25 H 1.48497 * 109.47078 * 25.01033 * 23 21 19 26 26 H 1.48504 * 109.46861 * 145.00994 * 23 21 19 27 27 C 1.47016 * 108.70093 * 335.55474 * 18 17 16 28 28 H 1.08995 * 109.47431 * 300.00072 * 1 2 3 29 29 H 1.08998 * 109.47292 * 60.00493 * 1 2 3 30 30 H 1.09006 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.39917 * 0.03882 * 4 3 2 32 32 H 0.96695 * 113.99771 * 270.02690 * 6 5 4 33 33 H 1.07998 * 119.66816 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46564 * 264.15410 * 13 12 10 35 35 H 1.08999 * 109.46571 * 24.15394 * 13 12 10 36 36 H 1.08991 * 109.46829 * 144.15149 * 13 12 10 37 37 H 1.08998 * 111.00008 * 200.93443 * 16 14 12 38 38 H 1.08995 * 111.00972 * 324.74951 * 16 14 12 39 39 H 1.09004 * 110.49370 * 278.44966 * 17 16 14 40 40 H 1.08999 * 110.34275 * 156.05840 * 17 16 14 41 41 H 0.96993 * 119.99961 * 179.97438 * 22 21 19 42 42 H 1.08997 * 109.88415 * 120.70192 * 27 18 17 43 43 H 1.09003 * 109.88483 * 241.71343 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3063 2.3834 0.0042 5 6 1.9723 3.6002 -0.0009 6 8 1.2576 4.7516 -0.0013 7 7 3.2971 3.6548 -0.0059 8 6 4.0395 2.5681 -0.0056 9 6 3.4500 1.3033 0.0004 10 6 4.2835 0.0883 0.0013 11 8 3.8382 -0.9549 -0.4376 12 7 5.5394 0.1330 0.4883 13 6 6.0610 1.3788 1.0561 14 6 6.3830 -1.0642 0.4499 15 1 5.8590 -1.8912 -0.0293 16 6 7.7223 -0.7688 -0.2755 17 6 8.5571 -0.1298 0.8652 18 7 8.1767 -0.8822 2.0746 19 6 8.9404 -1.0184 3.2030 20 1 8.6535 -1.7255 3.9672 21 6 10.0836 -0.2477 3.3645 22 7 10.3376 0.7362 2.5279 23 14 11.2613 -0.6067 4.7693 24 1 10.9364 0.2690 5.9237 25 1 11.1295 -2.0293 5.1745 26 1 12.6544 -0.3453 4.3264 27 6 6.8388 -1.4567 1.8710 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2269 2.3513 0.0082 32 1 1.0468 5.0834 -0.8847 33 1 5.1159 2.6560 -0.0102 34 1 6.6289 1.9147 0.2957 35 1 5.2311 1.9992 1.3944 36 1 6.7108 1.1490 1.9004 37 1 8.1839 -1.6891 -0.6335 38 1 7.5764 -0.0635 -1.0936 39 1 8.3039 0.9243 0.9790 40 1 9.6224 -0.2456 0.6658 41 1 11.1362 1.2750 2.6410 42 1 6.8841 -2.5421 1.9592 43 1 6.1459 -1.0536 2.6097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033435037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:33 Heat of formation + Delta-G solvation = -6.517884 kcal Electronic energy + Delta-G solvation = -27839.965743 eV Core-core repulsion = 23888.766991 eV Total energy + Delta-G solvation = -3951.198752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34824 -39.61529 -38.98320 -37.41617 -36.96826 -34.48818 -32.37372 -31.79926 -30.77386 -29.13647 -28.22190 -27.63726 -26.50161 -24.72223 -23.77593 -23.25748 -21.10488 -20.21281 -19.58927 -18.88425 -17.96968 -17.36191 -17.09958 -16.77877 -16.32810 -15.89648 -15.45694 -15.04547 -14.80981 -14.73607 -14.67397 -14.09790 -13.84169 -13.49628 -13.09132 -12.88245 -12.50936 -12.24636 -12.21062 -11.89556 -11.82754 -11.77037 -11.63859 -11.47958 -11.06303 -10.87637 -10.82024 -10.42741 -10.09595 -9.95482 -9.85831 -9.67442 -9.47351 -9.31175 -9.03354 -8.60545 -8.24748 -6.81910 -5.77682 -3.09933 0.39437 0.97612 2.73405 2.83764 3.16604 3.25917 3.38816 3.45348 3.47002 3.63465 4.26038 4.40673 4.48785 4.56287 4.73748 4.80344 4.89302 5.11193 5.14659 5.29178 5.32862 5.39491 5.44030 5.49818 5.52764 5.71492 5.77852 5.88483 6.01221 6.21213 6.29721 6.34057 6.53776 6.59109 6.71965 6.82510 7.03566 7.12727 7.45296 7.53954 7.60826 7.68506 7.76311 8.23277 8.39606 9.17341 9.78560 10.45858 11.35417 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.003302 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.206432 B = 8477.306608 C = 9179.885061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.275 6.275 3 C 0.235 3.765 4 C -0.293 4.293 5 C 0.364 3.636 6 O -0.481 6.481 7 N -0.529 5.529 8 C 0.179 3.821 9 C -0.228 4.228 10 C 0.566 3.434 11 O -0.531 6.531 12 N -0.588 5.588 13 C 0.052 3.948 14 C 0.129 3.871 15 H 0.102 0.898 16 C -0.157 4.157 17 C 0.165 3.835 18 N -0.602 5.602 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.126 3.874 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.405 0.595 33 H 0.196 0.804 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.778 4.605 -8.616 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.183 6.183 3 C 0.179 3.821 4 C -0.315 4.315 5 C 0.187 3.813 6 O -0.289 6.289 7 N -0.251 5.251 8 C 0.022 3.978 9 C -0.235 4.235 10 C 0.353 3.647 11 O -0.408 6.408 12 N -0.320 5.320 13 C -0.090 4.090 14 C 0.026 3.974 15 H 0.120 0.880 16 C -0.197 4.197 17 C 0.040 3.960 18 N -0.329 5.329 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.001 4.001 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.264 0.736 33 H 0.212 0.788 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -18.401 4.668 -8.153 20.661 hybrid contribution -0.118 -0.492 0.404 0.647 sum -18.519 4.177 -7.749 20.505 Atomic orbital electron populations 1.23255 0.77900 1.04844 1.01558 1.86343 1.21500 1.24820 1.85676 1.19101 0.90774 0.84786 0.87420 1.22036 1.02056 0.91662 1.15730 1.19055 0.86798 0.84890 0.90544 1.84701 1.71284 1.38778 1.34100 1.67349 1.06260 1.33240 1.18264 1.23872 1.01388 0.84763 0.87817 1.20497 0.91366 0.96416 1.15204 1.17649 0.81226 0.87289 0.78512 1.90782 1.71895 1.31059 1.47109 1.47657 1.12506 1.12599 1.59207 1.22702 0.99912 0.85744 1.00677 1.22127 0.90951 0.86636 0.97685 0.88007 1.23402 0.95700 1.01500 0.99055 1.21666 0.97944 0.93835 0.82531 1.44513 1.13443 1.60462 1.14433 1.19007 1.03655 1.16992 0.96073 0.90724 1.24791 0.99464 0.97012 0.98888 1.69934 1.27625 1.20372 1.38541 0.86142 0.80590 0.77772 0.81491 1.21659 1.20654 1.21650 1.21642 0.88523 0.96815 0.93087 0.92194 0.92210 0.87450 0.83273 0.73642 0.78797 0.91579 0.90952 0.87690 0.90913 0.91809 0.94495 0.91405 0.93701 0.94873 0.95448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.14 16 2 O -0.28 -3.63 9.01 -37.62 -0.34 -3.97 16 3 C 0.24 3.09 6.71 -38.36 -0.26 2.83 16 4 C -0.29 -3.07 9.02 -39.19 -0.35 -3.42 16 5 C 0.36 4.14 7.73 -17.05 -0.13 4.01 16 6 O -0.48 -4.35 13.54 -18.27 -0.25 -4.60 16 7 N -0.53 -6.93 10.36 -13.04 -0.14 -7.06 16 8 C 0.18 2.33 8.69 -17.16 -0.15 2.18 16 9 C -0.23 -3.32 5.56 -104.70 -0.58 -3.90 16 10 C 0.57 9.66 7.46 -12.56 -0.09 9.56 16 11 O -0.53 -10.48 15.05 -14.11 -0.21 -10.69 16 12 N -0.59 -9.91 2.83 -173.14 -0.49 -10.40 16 13 C 0.05 0.81 6.72 59.85 0.40 1.21 16 14 C 0.13 2.36 3.58 -66.09 -0.24 2.13 16 15 H 0.10 1.87 7.00 -51.93 -0.36 1.50 16 16 C -0.16 -2.87 6.54 -24.47 -0.16 -3.03 16 17 C 0.16 3.71 4.56 -2.41 -0.01 3.70 16 18 N -0.60 -14.68 2.99 -169.94 -0.51 -15.19 16 19 C -0.23 -6.20 10.23 -15.06 -0.15 -6.35 16 20 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 21 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 22 N -0.92 -25.72 10.69 55.49 0.59 -25.13 16 23 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.13 2.64 6.20 -3.07 -0.02 2.62 16 28 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 29 H 0.06 0.35 7.72 -51.93 -0.40 -0.05 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.12 6.45 -52.49 -0.34 0.78 16 32 H 0.40 1.47 9.06 45.56 0.41 1.89 16 33 H 0.20 2.30 4.35 -52.49 -0.23 2.07 16 34 H 0.07 0.92 6.89 -51.93 -0.36 0.56 16 35 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 36 H 0.10 2.01 5.64 -51.93 -0.29 1.72 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.85 5.37 -51.93 -0.28 0.57 16 40 H 0.07 1.74 6.96 -51.93 -0.36 1.38 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -34.01 342.31 -6.57 -40.58 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.51 Total: 2.24 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -0.85 Total: 12.45 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.54 Total: -57.78 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.80 Total: -19.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.01 -6.57 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.060 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds